Wall clock time and date at job start Tue Mar 31 2020 19:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46611 * 2 1 4 4 N 1.46496 * 109.46811 * 119.99916 * 2 1 3 5 5 C 1.34779 * 119.99965 * 274.99773 * 4 2 1 6 6 O 1.21276 * 120.00091 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00005 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.47311 * 180.02562 * 7 5 4 9 9 N 1.46496 * 109.47271 * 179.97438 * 8 7 5 10 10 C 1.34949 * 126.03720 * 124.99816 * 9 8 7 11 11 C 1.35312 * 107.74763 * 179.97438 * 10 9 8 12 12 C 1.39871 * 107.91849 * 0.02562 * 11 10 9 13 13 N 1.30831 * 108.20427 * 359.74003 * 12 11 10 14 14 C 1.52999 * 109.46997 * 240.00095 * 2 1 3 15 15 H 1.09001 * 109.47362 * 299.99445 * 14 2 1 16 16 C 1.53006 * 109.46623 * 179.97438 * 14 2 1 17 17 N 1.46898 * 109.47548 * 60.00184 * 14 2 1 18 18 C 1.46900 * 110.99922 * 204.99872 * 17 14 2 19 19 C 1.50704 * 109.46782 * 179.97438 * 18 17 14 20 20 O 1.21294 * 120.00249 * 359.97438 * 19 18 17 21 21 N 1.34772 * 119.99818 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00065 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99863 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00027 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99942 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00109 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47287 * 90.00014 * 26 24 22 28 28 H 1.48501 * 109.47153 * 210.00245 * 26 24 22 29 29 H 1.48505 * 109.47189 * 330.00096 * 26 24 22 30 30 H 1.09001 * 109.47377 * 300.00266 * 1 2 3 31 31 H 1.09000 * 109.46866 * 60.00117 * 1 2 3 32 32 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99853 * 95.00057 * 4 2 1 34 34 H 1.09007 * 109.46994 * 300.00448 * 7 5 4 35 35 H 1.08999 * 109.47030 * 60.00390 * 7 5 4 36 36 H 1.08998 * 109.46809 * 300.00492 * 8 7 5 37 37 H 1.09008 * 109.46811 * 60.00176 * 8 7 5 38 38 H 1.08000 * 126.12049 * 0.02562 * 10 9 8 39 39 H 1.07999 * 126.04202 * 180.02562 * 11 10 9 40 40 H 1.08000 * 125.89296 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.47002 * 179.97438 * 16 14 2 42 42 H 1.08993 * 109.46955 * 300.00075 * 16 14 2 43 43 H 1.09000 * 109.47050 * 59.99904 * 16 14 2 44 44 H 1.00893 * 111.00120 * 81.04124 * 17 14 2 45 45 H 1.08996 * 109.46839 * 299.99510 * 18 17 14 46 46 H 1.09003 * 109.47177 * 60.00055 * 18 17 14 47 47 H 0.97002 * 120.00090 * 359.97438 * 21 19 18 48 48 H 0.96995 * 119.99926 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6498 -0.7285 3.5875 8 6 2.7006 0.2545 4.7589 9 7 3.1888 -0.4361 5.9551 10 6 4.2413 -0.0633 6.7131 11 6 4.3625 -0.9594 7.7198 12 6 3.3498 -1.9127 7.5716 13 7 2.6425 -1.5971 6.5172 14 6 2.0400 -0.7212 -1.2493 15 1 1.6768 -1.7489 -1.2493 16 6 3.5701 -0.7206 -1.2495 17 7 1.5504 -0.0288 -2.4487 18 6 1.4877 -0.9439 -3.5961 19 6 0.9817 -0.1997 -4.8050 20 8 0.7005 0.9770 -4.7190 21 7 0.8416 -0.8418 -5.9816 22 6 0.3818 -0.1647 -7.0815 23 1 0.1314 0.8831 -7.0050 24 6 0.2368 -0.8269 -8.2945 25 7 -0.2044 -0.1780 -9.3487 26 14 0.6692 -2.6393 -8.4268 27 1 -0.5310 -3.4582 -8.1199 28 1 1.1331 -2.9382 -9.8054 29 1 1.7492 -2.9624 -7.4601 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 1.9776 -1.5508 3.8325 35 1 3.6492 -1.1202 3.3980 36 1 3.3726 1.0770 4.5140 37 1 1.7010 0.6459 4.9483 38 1 4.8730 0.7966 6.5465 39 1 5.1092 -0.9416 8.4998 40 1 3.1788 -2.7606 8.2183 41 1 3.9335 -1.2348 -2.1392 42 1 3.9330 0.3071 -1.2497 43 1 3.9338 -1.2342 -0.3595 44 1 2.1205 0.7766 -2.6593 45 1 2.4831 -1.3375 -3.8017 46 1 0.8113 -1.7675 -3.3675 47 1 1.0668 -1.7828 -6.0505 48 1 -0.3059 -0.6403 -10.1953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755227493.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:49 Heat of formation + Delta-G solvation = 9.205565 kcal Electronic energy + Delta-G solvation = -27987.340055 eV Core-core repulsion = 23886.266777 eV Total energy + Delta-G solvation = -4101.073278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52130 -40.25297 -38.68075 -37.44196 -34.81594 -34.56595 -33.90045 -31.73570 -31.44211 -30.60863 -29.91805 -29.43385 -26.54998 -25.22113 -24.12720 -23.15057 -21.51163 -21.18589 -20.86090 -20.44179 -19.42486 -18.42933 -18.04644 -16.94923 -16.56895 -16.30784 -15.92113 -15.45280 -15.18913 -14.89336 -14.76250 -14.55938 -14.17307 -14.04692 -13.93911 -13.54189 -13.48064 -13.34960 -13.14519 -13.06382 -12.74784 -12.59833 -12.41172 -12.22194 -12.06504 -11.87447 -11.69912 -11.66714 -11.39159 -11.18450 -11.03031 -10.80461 -10.62435 -10.22870 -9.99997 -9.82905 -9.60010 -9.37405 -9.00293 -8.63398 -8.23118 -8.18318 -6.33373 -3.84989 1.49664 2.02430 2.29170 2.47123 2.84910 2.99254 3.04282 3.12691 3.70632 4.01082 4.07243 4.11553 4.23929 4.37876 4.47341 4.54633 4.68225 4.73536 4.84526 4.90737 5.01790 5.02687 5.19319 5.22418 5.32350 5.33934 5.38343 5.40477 5.51094 5.55427 5.62034 5.65014 5.76305 5.84582 5.89144 5.92540 5.99259 6.25331 6.26216 6.47468 6.58619 6.99531 7.16515 7.30776 7.47942 7.55461 7.88346 8.12050 8.56987 8.92598 9.39781 9.79658 10.79744 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034142 B = 0.001571 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.913497 B =17820.930436 C =18155.806016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.153 3.847 3 H 0.090 0.910 4 N -0.721 5.721 5 C 0.520 3.480 6 O -0.539 6.539 7 C -0.153 4.153 8 C 0.150 3.850 9 N -0.373 5.373 10 C 0.055 3.945 11 C -0.277 4.277 12 C 0.044 3.956 13 N -0.297 5.297 14 C 0.077 3.923 15 H 0.081 0.919 16 C -0.184 4.184 17 N -0.657 5.657 18 C 0.050 3.950 19 C 0.449 3.551 20 O -0.563 6.563 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.399 0.601 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.174 0.826 39 H 0.147 0.853 40 H 0.182 0.818 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.355 0.645 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.360 -7.363 30.585 33.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.108 0.892 4 N -0.373 5.373 5 C 0.305 3.695 6 O -0.416 6.416 7 C -0.194 4.194 8 C 0.028 3.972 9 N -0.155 5.155 10 C -0.091 4.091 11 C -0.307 4.307 12 C -0.142 4.142 13 N -0.119 5.119 14 C -0.034 4.034 15 H 0.100 0.900 16 C -0.243 4.243 17 N -0.290 5.290 18 C -0.083 4.083 19 C 0.235 3.765 20 O -0.445 6.445 21 N -0.230 5.230 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.233 0.767 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.191 0.809 39 H 0.164 0.836 40 H 0.199 0.801 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.175 0.825 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.179 -5.999 29.703 31.662 hybrid contribution 2.163 -1.935 -0.065 2.903 sum 11.341 -7.934 29.639 32.711 Atomic orbital electron populations 1.22042 0.94105 1.01853 1.03127 1.20911 0.95052 0.97128 0.82078 0.89159 1.46064 1.67282 1.14017 1.09901 1.20263 0.77710 0.87211 0.84310 1.90750 1.50031 1.15891 1.84948 1.21884 1.04433 1.00342 0.92725 1.21427 1.02645 0.93061 0.80029 1.48797 1.23327 1.21097 1.22316 1.22635 0.92183 1.00831 0.93443 1.21538 1.05714 0.99215 1.04213 1.23916 0.94318 1.00050 0.95955 1.77344 1.22117 1.00216 1.12228 1.21760 0.92627 0.98188 0.90835 0.90044 1.22543 0.97051 1.02648 1.02093 1.59982 1.57766 1.09104 1.02129 1.21727 0.99989 0.95750 0.90821 1.19685 0.84840 0.88261 0.83745 1.90578 1.53733 1.15984 1.84214 1.42201 1.60082 1.11131 1.09549 1.19439 1.40173 0.98050 0.85788 0.86257 1.25038 0.97460 0.98378 0.95239 1.69621 1.45035 1.36537 1.00858 0.86670 0.78971 0.85187 0.78514 1.19599 1.20188 1.19588 0.93034 0.89406 0.93170 0.76735 0.87377 0.88393 0.87653 0.88703 0.80899 0.83553 0.80073 0.92244 0.92072 0.92260 0.82509 0.93673 0.89445 0.79725 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.33 37.16 0.35 -1.45 16 2 C 0.15 1.59 2.34 -67.93 -0.16 1.43 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 N -0.72 -5.64 4.38 -53.81 -0.24 -5.88 16 5 C 0.52 4.64 7.79 -10.98 -0.09 4.55 16 6 O -0.54 -6.89 15.64 5.56 0.09 -6.81 16 7 C -0.15 -0.97 5.89 -27.88 -0.16 -1.13 16 8 C 0.15 1.04 5.80 -4.04 -0.02 1.02 16 9 N -0.37 -2.96 3.68 -61.37 -0.23 -3.19 16 10 C 0.06 0.35 11.45 -17.22 -0.20 0.16 16 11 C -0.28 -1.78 10.80 -40.01 -0.43 -2.22 16 12 C 0.04 0.32 12.03 -17.37 -0.21 0.11 16 13 N -0.30 -2.81 12.42 30.62 0.38 -2.43 16 14 C 0.08 0.78 2.22 -67.71 -0.15 0.62 16 15 H 0.08 0.74 7.80 -51.93 -0.40 0.33 16 16 C -0.18 -1.61 9.00 37.16 0.33 -1.27 16 17 N -0.66 -9.19 5.11 -107.99 -0.55 -9.74 16 18 C 0.05 0.76 5.97 -4.97 -0.03 0.73 16 19 C 0.45 9.85 7.82 -10.99 -0.09 9.76 16 20 O -0.56 -14.79 15.78 5.55 0.09 -14.70 16 21 N -0.59 -13.73 5.09 -10.96 -0.06 -13.79 16 22 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 23 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.55 13.96 55.50 0.77 -24.77 16 26 Si 0.88 19.07 27.74 -169.99 -4.71 14.36 16 27 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 29 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.22 7.60 -51.93 -0.39 0.83 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.40 2.09 8.39 -40.82 -0.34 1.75 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.61 8.03 -51.93 -0.42 0.20 16 37 H 0.09 0.75 8.10 -51.92 -0.42 0.33 16 38 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 42 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 43 H 0.06 0.41 7.45 -51.93 -0.39 0.03 16 44 H 0.35 5.32 8.17 -39.30 -0.32 5.00 16 45 H 0.05 0.60 7.43 -51.93 -0.39 0.21 16 46 H 0.09 1.18 8.06 -51.93 -0.42 0.77 16 47 H 0.37 7.51 5.76 -40.82 -0.24 7.28 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -35.61 403.02 -6.93 -42.54 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -7.45 Total: 13.68 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.10 Total: 4.65 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.09 Total: -59.80 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.17 Total: -21.51 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.61 -6.93 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227493.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.749 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds