Wall clock time and date at job start Tue Mar 31 2020 19:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46611 * 2 1 4 4 N 1.46496 * 109.46811 * 119.99916 * 2 1 3 5 5 C 1.34779 * 119.99965 * 274.99773 * 4 2 1 6 6 O 1.21276 * 120.00091 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00005 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.47311 * 180.02562 * 7 5 4 9 9 N 1.46496 * 109.47271 * 179.97438 * 8 7 5 10 10 C 1.34949 * 126.03720 * 124.99816 * 9 8 7 11 11 C 1.35312 * 107.74763 * 179.97438 * 10 9 8 12 12 C 1.39871 * 107.91849 * 0.02562 * 11 10 9 13 13 N 1.30831 * 108.20427 * 359.74003 * 12 11 10 14 14 C 1.52999 * 109.46997 * 240.00095 * 2 1 3 15 15 H 1.09001 * 109.47362 * 299.99445 * 14 2 1 16 16 C 1.53006 * 109.46623 * 179.97438 * 14 2 1 17 17 N 1.46898 * 109.47548 * 60.00184 * 14 2 1 18 18 C 1.46900 * 110.99922 * 204.99872 * 17 14 2 19 19 C 1.50704 * 109.46782 * 179.97438 * 18 17 14 20 20 O 1.21294 * 120.00249 * 359.97438 * 19 18 17 21 21 N 1.34772 * 119.99818 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00065 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99863 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00027 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99942 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00109 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47287 * 90.00014 * 26 24 22 28 28 H 1.48501 * 109.47153 * 210.00245 * 26 24 22 29 29 H 1.48505 * 109.47189 * 330.00096 * 26 24 22 30 30 H 1.09001 * 109.47377 * 300.00266 * 1 2 3 31 31 H 1.09000 * 109.46866 * 60.00117 * 1 2 3 32 32 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99853 * 95.00057 * 4 2 1 34 34 H 1.09007 * 109.46994 * 300.00448 * 7 5 4 35 35 H 1.08999 * 109.47030 * 60.00390 * 7 5 4 36 36 H 1.08998 * 109.46809 * 300.00492 * 8 7 5 37 37 H 1.09008 * 109.46811 * 60.00176 * 8 7 5 38 38 H 1.08000 * 126.12049 * 0.02562 * 10 9 8 39 39 H 1.07999 * 126.04202 * 180.02562 * 11 10 9 40 40 H 1.08000 * 125.89296 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.47002 * 179.97438 * 16 14 2 42 42 H 1.08993 * 109.46955 * 300.00075 * 16 14 2 43 43 H 1.09000 * 109.47050 * 59.99904 * 16 14 2 44 44 H 1.00893 * 111.00120 * 81.04124 * 17 14 2 45 45 H 1.08996 * 109.46839 * 299.99510 * 18 17 14 46 46 H 1.09003 * 109.47177 * 60.00055 * 18 17 14 47 47 H 0.97002 * 120.00090 * 359.97438 * 21 19 18 48 48 H 0.96995 * 119.99926 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6498 -0.7285 3.5875 8 6 2.7006 0.2545 4.7589 9 7 3.1888 -0.4361 5.9551 10 6 4.2413 -0.0633 6.7131 11 6 4.3625 -0.9594 7.7198 12 6 3.3498 -1.9127 7.5716 13 7 2.6425 -1.5971 6.5172 14 6 2.0400 -0.7212 -1.2493 15 1 1.6768 -1.7489 -1.2493 16 6 3.5701 -0.7206 -1.2495 17 7 1.5504 -0.0288 -2.4487 18 6 1.4877 -0.9439 -3.5961 19 6 0.9817 -0.1997 -4.8050 20 8 0.7005 0.9770 -4.7190 21 7 0.8416 -0.8418 -5.9816 22 6 0.3818 -0.1647 -7.0815 23 1 0.1314 0.8831 -7.0050 24 6 0.2368 -0.8269 -8.2945 25 7 -0.2044 -0.1780 -9.3487 26 14 0.6692 -2.6393 -8.4268 27 1 -0.5310 -3.4582 -8.1199 28 1 1.1331 -2.9382 -9.8054 29 1 1.7492 -2.9624 -7.4601 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 1.9776 -1.5508 3.8325 35 1 3.6492 -1.1202 3.3980 36 1 3.3726 1.0770 4.5140 37 1 1.7010 0.6459 4.9483 38 1 4.8730 0.7966 6.5465 39 1 5.1092 -0.9416 8.4998 40 1 3.1788 -2.7606 8.2183 41 1 3.9335 -1.2348 -2.1392 42 1 3.9330 0.3071 -1.2497 43 1 3.9338 -1.2342 -0.3595 44 1 2.1205 0.7766 -2.6593 45 1 2.4831 -1.3375 -3.8017 46 1 0.8113 -1.7675 -3.3675 47 1 1.0668 -1.7828 -6.0505 48 1 -0.3059 -0.6403 -10.1953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755227493.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:48 Heat of formation + Delta-G solvation = -19.479136 kcal Electronic energy + Delta-G solvation = -27988.583917 eV Core-core repulsion = 23886.266777 eV Total energy + Delta-G solvation = -4102.317140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.02232 -41.03481 -40.30268 -38.51515 -36.09867 -35.46783 -35.22199 -33.74339 -32.30248 -31.24466 -30.70473 -30.09818 -28.05754 -25.84146 -25.66596 -24.10395 -22.01482 -21.82907 -21.68623 -21.24660 -21.08270 -20.27486 -18.66329 -17.86615 -17.44566 -17.33054 -16.90410 -16.80245 -16.48360 -15.90049 -15.63293 -15.33624 -15.14879 -15.10352 -15.02770 -14.73203 -14.35118 -14.31562 -14.24093 -13.94230 -13.87857 -13.56861 -13.41886 -13.29621 -13.07116 -13.02869 -12.72687 -12.55867 -12.40364 -12.39225 -12.22008 -11.97497 -11.66554 -11.54910 -11.50434 -11.02098 -10.44541 -10.37381 -10.23923 -10.14920 -9.49629 -9.28675 -8.40529 -6.01667 1.00329 1.30407 1.36803 1.45403 1.50765 1.58228 1.97660 1.99539 2.13635 2.23992 2.81770 3.16049 3.44976 3.55510 3.62232 3.72944 3.89807 4.03571 4.12058 4.17024 4.20039 4.23666 4.35070 4.44082 4.49215 4.53850 4.58135 4.61309 4.72628 4.81240 4.85550 4.88109 4.94503 4.98448 5.07938 5.19760 5.24467 5.37518 5.51250 5.55577 5.78915 5.91934 6.06232 6.13528 6.34854 6.52305 6.60694 6.80137 6.89383 7.22407 7.41093 7.98468 8.77266 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034142 B = 0.001571 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.913497 B =17820.930436 C =18155.806016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.160 3.840 3 H 0.064 0.936 4 N -0.707 5.707 5 C 0.521 3.479 6 O -0.582 6.582 7 C -0.137 4.137 8 C 0.149 3.851 9 N -0.381 5.381 10 C 0.051 3.949 11 C -0.286 4.286 12 C 0.037 3.963 13 N -0.337 5.337 14 C 0.085 3.915 15 H 0.106 0.894 16 C -0.179 4.179 17 N -0.677 5.677 18 C 0.066 3.934 19 C 0.447 3.553 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.053 0.947 24 C -0.016 4.016 25 N -0.936 5.936 26 Si 0.966 3.034 27 H -0.258 1.258 28 H -0.277 1.277 29 H -0.228 1.228 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.416 0.584 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.202 0.798 39 H 0.166 0.834 40 H 0.203 0.797 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.345 0.655 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.708 -11.460 32.589 37.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 H 0.082 0.918 4 N -0.359 5.359 5 C 0.308 3.692 6 O -0.462 6.462 7 C -0.177 4.177 8 C 0.028 3.972 9 N -0.164 5.164 10 C -0.095 4.095 11 C -0.315 4.315 12 C -0.149 4.149 13 N -0.159 5.159 14 C -0.025 4.025 15 H 0.124 0.876 16 C -0.238 4.238 17 N -0.309 5.309 18 C -0.066 4.066 19 C 0.235 3.765 20 O -0.500 6.500 21 N -0.233 5.233 22 C -0.459 4.459 23 H 0.071 0.929 24 C -0.214 4.214 25 N -0.577 5.577 26 Si 0.786 3.214 27 H -0.182 1.182 28 H -0.202 1.202 29 H -0.151 1.151 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.253 0.747 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.219 0.781 39 H 0.184 0.816 40 H 0.220 0.780 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.164 0.836 45 H 0.098 0.902 46 H 0.136 0.864 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.547 -10.146 31.748 35.274 hybrid contribution 1.395 -0.493 -0.590 1.592 sum 12.942 -10.639 31.158 35.377 Atomic orbital electron populations 1.21950 0.95249 1.02173 1.01164 1.20638 0.94017 0.96380 0.83477 0.91791 1.45853 1.66549 1.14716 1.08777 1.20704 0.76810 0.86687 0.85042 1.90743 1.51881 1.17952 1.85591 1.21756 1.05359 0.99686 0.90898 1.21406 1.02089 0.93499 0.80215 1.48862 1.23828 1.21046 1.22667 1.23209 0.91810 1.01496 0.92953 1.21879 1.05946 0.98915 1.04756 1.24413 0.94118 1.00751 0.95615 1.77288 1.23574 1.01478 1.13564 1.21767 0.93716 0.98564 0.88491 0.87642 1.22480 0.95528 1.02295 1.03451 1.59935 1.58781 1.09262 1.02965 1.21644 1.01977 0.95250 0.87739 1.21062 0.82453 0.87950 0.85005 1.90560 1.55293 1.18860 1.85274 1.42017 1.60588 1.11891 1.08762 1.19010 1.42364 0.96086 0.88458 0.92861 1.26138 0.96382 1.05083 0.93814 1.69812 1.46358 1.39634 1.01850 0.85347 0.80241 0.76376 0.79418 1.18208 1.20192 1.15144 0.94371 0.92016 0.91599 0.74653 0.87084 0.86348 0.86618 0.90418 0.78143 0.81609 0.78010 0.91771 0.93370 0.89925 0.83592 0.90227 0.86441 0.77415 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.33 71.98 0.67 -2.72 16 2 C 0.16 3.13 2.34 44.99 0.11 3.24 16 3 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 4 N -0.71 -9.45 4.38 -442.53 -1.94 -11.39 16 5 C 0.52 8.63 7.79 87.66 0.68 9.31 16 6 O -0.58 -14.94 15.64 -3.02 -0.05 -14.99 16 7 C -0.14 -1.47 5.89 29.85 0.18 -1.30 16 8 C 0.15 1.94 5.80 86.38 0.50 2.45 16 9 N -0.38 -5.56 3.68 -348.06 -1.28 -6.84 16 10 C 0.05 0.55 11.45 83.54 0.96 1.51 16 11 C -0.29 -3.11 10.80 21.99 0.24 -2.88 16 12 C 0.04 0.49 12.03 85.24 1.02 1.51 16 13 N -0.34 -6.01 12.42 -57.03 -0.71 -6.72 16 14 C 0.08 1.46 2.22 44.92 0.10 1.56 16 15 H 0.11 1.38 7.80 -2.39 -0.02 1.36 16 16 C -0.18 -2.51 9.00 71.98 0.65 -1.86 16 17 N -0.68 -17.93 5.11 -495.56 -2.53 -20.46 16 18 C 0.07 1.81 5.97 85.56 0.51 2.32 16 19 C 0.45 19.49 7.82 87.66 0.69 20.17 16 20 O -0.62 -33.70 15.78 -3.07 -0.05 -33.74 16 21 N -0.59 -27.11 5.09 -306.98 -1.56 -28.67 16 22 C -0.33 -19.20 10.16 84.04 0.85 -18.34 16 23 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 24 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 25 N -0.94 -56.33 13.96 21.66 0.30 -56.03 16 26 Si 0.97 37.99 27.74 68.60 1.90 39.89 16 27 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 28 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 29 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.75 7.60 -2.39 -0.02 1.74 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 2.79 8.39 -92.71 -0.78 2.01 16 34 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.12 1.22 8.03 -2.39 -0.02 1.20 16 37 H 0.08 1.26 8.10 -2.38 -0.02 1.24 16 38 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 40 H 0.20 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.06 0.88 7.45 -2.39 -0.02 0.86 16 42 H 0.05 0.82 8.13 -2.39 -0.02 0.80 16 43 H 0.08 0.78 7.45 -2.39 -0.02 0.77 16 44 H 0.34 10.29 8.17 -89.70 -0.73 9.56 16 45 H 0.08 1.71 7.43 -2.39 -0.02 1.70 16 46 H 0.12 2.61 8.06 -2.39 -0.02 2.59 16 47 H 0.39 14.56 5.76 -92.71 -0.53 14.03 16 48 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -85.65 403.02 0.60 -85.05 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -1.11 Total: 39.31 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 7.62 Total: 14.59 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -7.72 Total: -130.11 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -0.10 Total: -48.73 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.89 kcal Total: -85.65 0.60 -85.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227493.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.573 kcal (2) G-P(sol) polarization free energy of solvation -85.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds