Wall clock time and date at job start Tue Mar 31 2020 19:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47070 * 2 1 4 4 N 1.46898 * 109.47264 * 239.99480 * 2 1 3 5 5 C 1.46897 * 111.00202 * 85.00078 * 4 2 1 6 6 C 1.50700 * 109.47442 * 180.02562 * 5 4 2 7 7 O 1.21289 * 119.99743 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99792 * 180.02562 * 6 5 4 9 9 C 1.37097 * 119.99799 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00100 * 359.97438 * 9 8 6 11 11 C 1.38952 * 119.99977 * 179.97438 * 9 8 6 12 12 N 1.31412 * 120.00279 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99926 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47022 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46962 * 120.00243 * 13 11 9 16 16 H 1.48497 * 109.47213 * 239.99912 * 13 11 9 17 17 C 1.53002 * 109.46746 * 119.99844 * 2 1 3 18 18 H 1.09001 * 109.46901 * 184.99692 * 17 2 1 19 19 C 1.52996 * 109.47405 * 64.99723 * 17 2 1 20 20 N 1.46496 * 109.47076 * 304.99624 * 17 2 1 21 21 C 1.34777 * 120.00271 * 204.99915 * 20 17 2 22 22 O 1.21278 * 119.99854 * 0.02562 * 21 20 17 23 23 C 1.50703 * 120.00161 * 180.02562 * 21 20 17 24 24 C 1.53000 * 109.46912 * 180.02562 * 23 21 20 25 25 N 1.46499 * 109.46840 * 180.02562 * 24 23 21 26 26 C 1.34952 * 126.03775 * 124.99725 * 25 24 23 27 27 C 1.35318 * 107.74549 * 179.97438 * 26 25 24 28 28 C 1.39869 * 107.92015 * 0.02562 * 27 26 25 29 29 N 1.30842 * 108.20176 * 359.73879 * 28 27 26 30 30 H 1.08994 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47161 * 300.00377 * 1 2 3 32 32 H 1.09002 * 109.46498 * 60.00022 * 1 2 3 33 33 H 1.00903 * 111.00307 * 321.05118 * 4 2 1 34 34 H 1.09005 * 109.47241 * 300.00573 * 5 4 2 35 35 H 1.09000 * 109.47016 * 60.00102 * 5 4 2 36 36 H 0.97000 * 120.00506 * 359.97438 * 8 6 5 37 37 H 0.97002 * 120.00231 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.47646 * 300.00347 * 19 17 2 39 39 H 1.09000 * 109.47057 * 59.99966 * 19 17 2 40 40 H 1.09002 * 109.47281 * 179.97438 * 19 17 2 41 41 H 0.97005 * 120.00266 * 25.00498 * 20 17 2 42 42 H 1.09002 * 109.47152 * 60.00245 * 23 21 20 43 43 H 1.09001 * 109.46980 * 300.00345 * 23 21 20 44 44 H 1.09001 * 109.47194 * 299.99742 * 24 23 21 45 45 H 1.08992 * 109.47399 * 59.99914 * 24 23 21 46 46 H 1.07999 * 126.12716 * 359.95773 * 26 25 24 47 47 H 1.07994 * 126.03994 * 180.02562 * 27 26 25 48 48 H 1.08005 * 125.90014 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2223 -2.3469 6 6 2.5875 -0.5221 -3.5560 7 8 2.8679 -1.6991 -3.4700 8 7 2.7284 0.1201 -4.7324 9 6 3.1882 -0.5571 -5.8322 10 1 3.4379 -1.6050 -5.7558 11 6 3.3330 0.1049 -7.0453 12 7 3.0287 1.3799 -7.1386 13 14 3.9602 -0.8176 -8.5437 14 1 4.2299 -2.2313 -8.1775 15 1 2.9363 -0.7707 -9.6183 16 1 5.2136 -0.1840 -9.0263 17 6 2.0400 -0.7212 1.2493 18 1 3.1263 -0.6444 1.2952 19 6 1.6351 -2.1954 1.1881 20 7 1.4559 -0.1035 2.4423 21 6 2.0911 -0.1936 3.6276 22 8 3.1467 -0.7857 3.7063 23 6 1.4900 0.4413 4.8550 24 6 2.4043 0.1944 6.0566 25 7 1.8195 0.8112 7.2499 26 6 1.5495 0.1864 8.4153 27 6 1.0190 1.1006 9.2601 28 6 0.9623 2.3259 8.5879 29 7 1.4468 2.1547 7.3846 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.4496 -1.4980 -1.4100 34 1 1.0872 0.6161 -2.5526 35 1 2.7590 1.0459 -2.1183 36 1 2.5045 1.0614 -4.8011 37 1 3.1295 1.8419 -7.9855 38 1 0.5489 -2.2724 1.1421 39 1 2.0698 -2.6550 0.3005 40 1 1.9988 -2.7093 2.0780 41 1 0.6117 0.3703 2.3794 42 1 0.5103 0.0040 5.0475 43 1 1.3837 1.5141 4.6940 44 1 2.5109 -0.8783 6.2178 45 1 3.3837 0.6320 5.8640 46 1 1.7251 -0.8565 8.6342 47 1 0.6963 0.9167 10.2742 48 1 0.5872 3.2540 8.9935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755227494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:52 Heat of formation + Delta-G solvation = 5.278014 kcal Electronic energy + Delta-G solvation = -27933.949454 eV Core-core repulsion = 23832.705865 eV Total energy + Delta-G solvation = -4101.243590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.49470 -40.24909 -38.55537 -37.45683 -34.74413 -34.49930 -33.82534 -31.55020 -31.18485 -30.59990 -29.76954 -29.04184 -26.44231 -25.40868 -24.46536 -23.56969 -21.49393 -21.21481 -20.51329 -19.90671 -19.34238 -18.09081 -17.92073 -17.01861 -16.41658 -16.08876 -15.91394 -15.56508 -15.30876 -14.77305 -14.69622 -14.54460 -14.24054 -14.03308 -13.91711 -13.75169 -13.40150 -13.32376 -13.14665 -12.90976 -12.67957 -12.38812 -12.29162 -12.20228 -11.94926 -11.84322 -11.56871 -11.44808 -11.08257 -11.01593 -10.99778 -10.89098 -10.35306 -10.24118 -10.18612 -9.80334 -9.53547 -9.31213 -8.97807 -8.50414 -8.11440 -7.97752 -6.43348 -3.84147 1.52270 2.05334 2.32991 2.49565 2.90458 3.15428 3.26278 3.33578 3.88588 4.05210 4.10035 4.25850 4.31570 4.41935 4.52702 4.64278 4.71878 4.75631 4.87664 5.04250 5.04993 5.15158 5.24160 5.25212 5.31480 5.33364 5.35185 5.42316 5.56472 5.63189 5.64323 5.72355 5.81223 5.90709 5.95622 6.04360 6.23245 6.27817 6.29236 6.37490 6.61176 7.10843 7.22227 7.33452 7.54078 7.58198 7.92449 8.04820 8.59299 9.16434 9.52468 10.03626 10.74394 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034106 B = 0.001515 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.780666 B =18479.902075 C =18730.118883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.078 3.922 3 H 0.083 0.917 4 N -0.658 5.658 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.583 6.583 8 N -0.563 5.563 9 C -0.299 4.299 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.153 3.847 18 H 0.097 0.903 19 C -0.163 4.163 20 N -0.723 5.723 21 C 0.519 3.481 22 O -0.539 6.539 23 C -0.153 4.153 24 C 0.150 3.850 25 N -0.373 5.373 26 C 0.055 3.945 27 C -0.277 4.277 28 C 0.043 3.957 29 N -0.297 5.297 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.353 0.647 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.398 0.602 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.174 0.826 47 H 0.147 0.853 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 1.707 28.859 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.034 4.034 3 H 0.101 0.899 4 N -0.291 5.291 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.122 0.878 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.048 3.952 18 H 0.115 0.885 19 C -0.221 4.221 20 N -0.376 5.376 21 C 0.304 3.696 22 O -0.416 6.416 23 C -0.194 4.194 24 C 0.028 3.972 25 N -0.155 5.155 26 C -0.091 4.091 27 C -0.307 4.307 28 C -0.143 4.143 29 N -0.119 5.119 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.174 0.826 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.234 0.766 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.191 0.809 47 H 0.164 0.836 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.941 1.157 27.687 28.567 hybrid contribution -1.511 0.254 -0.297 1.561 sum -8.452 1.412 27.390 28.699 Atomic orbital electron populations 1.22621 0.97394 1.02723 1.02077 1.21725 0.92597 0.98221 0.90840 0.89917 1.60021 1.57683 1.09114 1.02261 1.21708 0.99985 0.95680 0.90763 1.19785 0.85239 0.88247 0.84159 1.90528 1.55287 1.16266 1.84589 1.41864 1.57741 1.12443 1.07958 1.19762 1.39900 0.96492 0.86726 0.87837 1.25262 0.97628 0.95769 0.99260 1.69618 1.48710 1.08882 1.27085 0.85802 0.78251 0.79660 0.80647 1.19195 1.20783 1.20734 1.20922 0.99555 0.92462 0.82233 0.88472 1.22171 1.01057 0.95608 1.03258 1.46216 1.25880 1.56981 1.08498 1.20288 0.84844 0.79998 0.84471 1.90751 1.22364 1.42839 1.85625 1.21886 1.00704 1.04151 0.92667 1.21429 0.96463 0.98624 0.80647 1.48802 1.48578 1.06831 1.11303 1.22634 1.00093 0.99695 0.86687 1.21534 1.13634 0.93174 1.02351 1.23919 0.99246 0.99375 0.91718 1.77351 1.19960 0.94417 1.20145 0.91614 0.92527 0.91910 0.82638 0.93752 0.89546 0.77478 0.91923 0.92875 0.89925 0.92600 0.76609 0.88396 0.87381 0.87662 0.88662 0.80911 0.83567 0.80076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 8.68 37.16 0.32 -1.34 16 2 C 0.08 0.85 2.64 -67.71 -0.18 0.67 16 3 H 0.08 0.90 7.80 -51.93 -0.41 0.50 16 4 N -0.66 -9.86 5.23 -107.99 -0.56 -10.43 16 5 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 6 C 0.44 10.19 7.82 -10.99 -0.09 10.11 16 7 O -0.58 -15.58 15.78 5.55 0.09 -15.50 16 8 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 9 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 10 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 13 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.15 1.68 2.63 -67.93 -0.18 1.50 16 18 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 19 C -0.16 -1.81 8.86 37.16 0.33 -1.48 16 20 N -0.72 -6.13 4.99 -53.81 -0.27 -6.40 16 21 C 0.52 4.92 7.79 -10.98 -0.09 4.84 16 22 O -0.54 -7.17 15.64 5.56 0.09 -7.09 16 23 C -0.15 -1.04 5.89 -27.88 -0.16 -1.20 16 24 C 0.15 1.09 5.80 -4.04 -0.02 1.07 16 25 N -0.37 -3.07 3.68 -61.37 -0.23 -3.29 16 26 C 0.06 0.36 11.45 -17.22 -0.20 0.17 16 27 C -0.28 -1.84 10.80 -40.01 -0.43 -2.27 16 28 C 0.04 0.33 12.03 -17.36 -0.21 0.12 16 29 N -0.30 -2.89 12.42 30.63 0.38 -2.51 16 30 H 0.06 0.58 6.55 -51.93 -0.34 0.24 16 31 H 0.06 0.36 6.29 -51.93 -0.33 0.04 16 32 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 33 H 0.35 5.46 7.39 -39.29 -0.29 5.17 16 34 H 0.04 0.66 7.44 -51.93 -0.39 0.28 16 35 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 36 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 39 H 0.08 1.06 7.13 -51.93 -0.37 0.69 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.40 2.41 6.58 -40.82 -0.27 2.14 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.11 0.64 8.03 -51.93 -0.42 0.23 16 45 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 47 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 399.40 15.07 6.02 6.02 Total: -1.00 -34.53 399.40 -7.15 -41.67 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -7.13 Total: 14.33 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.17 Total: 5.08 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.01 Total: -60.47 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.17 Total: -22.58 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.53 -7.15 -41.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.953 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds