Wall clock time and date at job start Tue Mar 31 2020 19:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47070 * 2 1 4 4 N 1.46898 * 109.47264 * 239.99480 * 2 1 3 5 5 C 1.46897 * 111.00202 * 85.00078 * 4 2 1 6 6 C 1.50700 * 109.47442 * 180.02562 * 5 4 2 7 7 O 1.21289 * 119.99743 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99792 * 180.02562 * 6 5 4 9 9 C 1.37097 * 119.99799 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00100 * 359.97438 * 9 8 6 11 11 C 1.38952 * 119.99977 * 179.97438 * 9 8 6 12 12 N 1.31412 * 120.00279 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99926 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47022 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46962 * 120.00243 * 13 11 9 16 16 H 1.48497 * 109.47213 * 239.99912 * 13 11 9 17 17 C 1.53002 * 109.46746 * 119.99844 * 2 1 3 18 18 H 1.09001 * 109.46901 * 184.99692 * 17 2 1 19 19 C 1.52996 * 109.47405 * 64.99723 * 17 2 1 20 20 N 1.46496 * 109.47076 * 304.99624 * 17 2 1 21 21 C 1.34777 * 120.00271 * 204.99915 * 20 17 2 22 22 O 1.21278 * 119.99854 * 0.02562 * 21 20 17 23 23 C 1.50703 * 120.00161 * 180.02562 * 21 20 17 24 24 C 1.53000 * 109.46912 * 180.02562 * 23 21 20 25 25 N 1.46499 * 109.46840 * 180.02562 * 24 23 21 26 26 C 1.34952 * 126.03775 * 124.99725 * 25 24 23 27 27 C 1.35318 * 107.74549 * 179.97438 * 26 25 24 28 28 C 1.39869 * 107.92015 * 0.02562 * 27 26 25 29 29 N 1.30842 * 108.20176 * 359.73879 * 28 27 26 30 30 H 1.08994 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47161 * 300.00377 * 1 2 3 32 32 H 1.09002 * 109.46498 * 60.00022 * 1 2 3 33 33 H 1.00903 * 111.00307 * 321.05118 * 4 2 1 34 34 H 1.09005 * 109.47241 * 300.00573 * 5 4 2 35 35 H 1.09000 * 109.47016 * 60.00102 * 5 4 2 36 36 H 0.97000 * 120.00506 * 359.97438 * 8 6 5 37 37 H 0.97002 * 120.00231 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.47646 * 300.00347 * 19 17 2 39 39 H 1.09000 * 109.47057 * 59.99966 * 19 17 2 40 40 H 1.09002 * 109.47281 * 179.97438 * 19 17 2 41 41 H 0.97005 * 120.00266 * 25.00498 * 20 17 2 42 42 H 1.09002 * 109.47152 * 60.00245 * 23 21 20 43 43 H 1.09001 * 109.46980 * 300.00345 * 23 21 20 44 44 H 1.09001 * 109.47194 * 299.99742 * 24 23 21 45 45 H 1.08992 * 109.47399 * 59.99914 * 24 23 21 46 46 H 1.07999 * 126.12716 * 359.95773 * 26 25 24 47 47 H 1.07994 * 126.03994 * 180.02562 * 27 26 25 48 48 H 1.08005 * 125.90014 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2223 -2.3469 6 6 2.5875 -0.5221 -3.5560 7 8 2.8679 -1.6991 -3.4700 8 7 2.7284 0.1201 -4.7324 9 6 3.1882 -0.5571 -5.8322 10 1 3.4379 -1.6050 -5.7558 11 6 3.3330 0.1049 -7.0453 12 7 3.0287 1.3799 -7.1386 13 14 3.9602 -0.8176 -8.5437 14 1 4.2299 -2.2313 -8.1775 15 1 2.9363 -0.7707 -9.6183 16 1 5.2136 -0.1840 -9.0263 17 6 2.0400 -0.7212 1.2493 18 1 3.1263 -0.6444 1.2952 19 6 1.6351 -2.1954 1.1881 20 7 1.4559 -0.1035 2.4423 21 6 2.0911 -0.1936 3.6276 22 8 3.1467 -0.7857 3.7063 23 6 1.4900 0.4413 4.8550 24 6 2.4043 0.1944 6.0566 25 7 1.8195 0.8112 7.2499 26 6 1.5495 0.1864 8.4153 27 6 1.0190 1.1006 9.2601 28 6 0.9623 2.3259 8.5879 29 7 1.4468 2.1547 7.3846 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.4496 -1.4980 -1.4100 34 1 1.0872 0.6161 -2.5526 35 1 2.7590 1.0459 -2.1183 36 1 2.5045 1.0614 -4.8011 37 1 3.1295 1.8419 -7.9855 38 1 0.5489 -2.2724 1.1421 39 1 2.0698 -2.6550 0.3005 40 1 1.9988 -2.7093 2.0780 41 1 0.6117 0.3703 2.3794 42 1 0.5103 0.0040 5.0475 43 1 1.3837 1.5141 4.6940 44 1 2.5109 -0.8783 6.2178 45 1 3.3837 0.6320 5.8640 46 1 1.7251 -0.8565 8.6342 47 1 0.6963 0.9167 10.2742 48 1 0.5872 3.2540 8.9935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755227494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:51 Heat of formation + Delta-G solvation = -21.243445 kcal Electronic energy + Delta-G solvation = -27935.099511 eV Core-core repulsion = 23832.705865 eV Total energy + Delta-G solvation = -4102.393646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02152 -41.08292 -40.18793 -38.64534 -36.07603 -35.41993 -35.22199 -33.28535 -32.35775 -31.25406 -30.45203 -29.85335 -27.99013 -26.17726 -25.87850 -24.65000 -22.04582 -21.84313 -21.19019 -21.14838 -20.77449 -19.93492 -18.73796 -17.93895 -17.39858 -17.18876 -16.96542 -16.68480 -16.40490 -16.03648 -15.94052 -15.63003 -15.32299 -15.07247 -14.96135 -14.71144 -14.55578 -14.10469 -13.97235 -13.76162 -13.57149 -13.50687 -13.32037 -13.24311 -13.14854 -13.05378 -12.87820 -12.56892 -12.40629 -12.40366 -12.11983 -11.88543 -11.82554 -11.54515 -11.51435 -11.02674 -10.38003 -10.36588 -10.12813 -10.01368 -9.49505 -9.31594 -8.47125 -5.95622 1.00588 1.36256 1.41811 1.50676 1.55813 1.56994 1.99780 2.05403 2.14066 2.30429 2.98726 3.20477 3.52883 3.55618 3.64147 3.78859 3.85927 3.93664 4.11996 4.19243 4.22374 4.29325 4.34647 4.45672 4.45884 4.53340 4.55964 4.61915 4.71996 4.74774 4.85072 4.88212 4.94584 4.96131 5.03493 5.19887 5.22415 5.41105 5.41468 5.49746 5.79058 5.88659 6.09440 6.13759 6.40395 6.49918 6.60058 6.80415 7.12777 7.20437 7.56423 8.11797 8.70394 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034106 B = 0.001515 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.780666 B =18479.902075 C =18730.118883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.083 3.917 3 H 0.088 0.912 4 N -0.675 5.675 5 C 0.068 3.932 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.012 4.012 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.274 1.274 15 H -0.270 1.270 16 H -0.272 1.272 17 C 0.160 3.840 18 H 0.064 0.936 19 C -0.155 4.155 20 N -0.709 5.709 21 C 0.519 3.481 22 O -0.580 6.580 23 C -0.137 4.137 24 C 0.150 3.850 25 N -0.382 5.382 26 C 0.051 3.949 27 C -0.286 4.286 28 C 0.036 3.964 29 N -0.338 5.338 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.349 0.651 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.414 0.586 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.078 0.922 46 H 0.202 0.798 47 H 0.167 0.833 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 2.404 30.032 31.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.028 4.028 3 H 0.107 0.893 4 N -0.308 5.308 5 C -0.065 4.065 6 C 0.224 3.776 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.199 1.199 15 H -0.195 1.195 16 H -0.197 1.197 17 C 0.054 3.946 18 H 0.082 0.918 19 C -0.214 4.214 20 N -0.363 5.363 21 C 0.306 3.694 22 O -0.460 6.460 23 C -0.177 4.177 24 C 0.028 3.972 25 N -0.164 5.164 26 C -0.094 4.094 27 C -0.315 4.315 28 C -0.149 4.149 29 N -0.160 5.160 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.169 0.831 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.253 0.747 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.096 0.904 46 H 0.219 0.781 47 H 0.184 0.816 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.661 1.906 28.880 30.211 hybrid contribution -0.984 0.029 -0.554 1.130 sum -9.646 1.935 28.326 29.986 Atomic orbital electron populations 1.22558 0.94963 1.03274 1.03443 1.21722 0.94435 0.97815 0.88799 0.89344 1.59960 1.58877 1.09235 1.02752 1.21539 1.01292 0.95187 0.88456 1.20910 0.83434 0.88029 0.85177 1.90497 1.56607 1.18395 1.85450 1.41929 1.58323 1.12595 1.08203 1.19704 1.42120 0.95965 0.88559 0.90376 1.26012 0.97213 0.96598 1.01328 1.69672 1.48674 1.09670 1.28060 0.84887 0.78164 0.78043 0.77344 1.19853 1.19504 1.19737 1.20634 0.97856 0.92742 0.83323 0.91784 1.22079 1.02151 0.95375 1.01759 1.46026 1.26259 1.56545 1.07455 1.20747 0.84182 0.79221 0.85221 1.90741 1.24292 1.44765 1.86236 1.21762 1.01116 1.04002 0.90868 1.21401 0.95792 0.99049 0.80928 1.48862 1.49014 1.06655 1.11885 1.23216 0.99159 1.01066 0.86000 1.21879 1.13517 0.92778 1.03294 1.24418 0.98447 1.00707 0.91337 1.77296 1.21624 0.95524 1.21526 0.91491 0.89606 0.92099 0.83097 0.91042 0.88051 0.76958 0.91322 0.90814 0.91995 0.93525 0.74736 0.86368 0.87092 0.86554 0.90371 0.78095 0.81568 0.78018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.68 71.98 0.62 -2.04 16 2 C 0.08 1.68 2.64 44.92 0.12 1.80 16 3 H 0.09 1.74 7.80 -2.39 -0.02 1.72 16 4 N -0.68 -19.85 5.23 -495.58 -2.59 -22.44 16 5 C 0.07 2.20 5.96 85.56 0.51 2.71 16 6 C 0.44 20.49 7.82 87.66 0.69 21.17 16 7 O -0.62 -34.31 15.78 -3.06 -0.05 -34.36 16 8 N -0.57 -29.17 5.29 -306.99 -1.62 -30.79 16 9 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 10 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 11 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 12 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 13 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 17 C 0.16 3.42 2.63 44.99 0.12 3.54 16 18 H 0.06 1.83 7.58 -2.39 -0.02 1.81 16 19 C -0.16 -3.40 8.86 71.98 0.64 -2.76 16 20 N -0.71 -10.82 4.99 -442.54 -2.21 -13.03 16 21 C 0.52 9.37 7.79 87.66 0.68 10.05 16 22 O -0.58 -15.62 15.64 -3.02 -0.05 -15.67 16 23 C -0.14 -1.64 5.89 29.85 0.18 -1.46 16 24 C 0.15 2.08 5.80 86.38 0.50 2.58 16 25 N -0.38 -5.84 3.68 -348.07 -1.28 -7.12 16 26 C 0.05 0.58 11.45 83.54 0.96 1.54 16 27 C -0.29 -3.25 10.80 21.99 0.24 -3.02 16 28 C 0.04 0.51 12.03 85.24 1.02 1.53 16 29 N -0.34 -6.28 12.42 -57.02 -0.71 -6.99 16 30 H 0.07 0.99 6.55 -2.39 -0.02 0.97 16 31 H 0.09 0.75 6.29 -2.39 -0.02 0.74 16 32 H 0.06 0.96 7.45 -2.39 -0.02 0.94 16 33 H 0.35 10.73 7.39 -89.69 -0.66 10.07 16 34 H 0.07 1.97 7.44 -2.38 -0.02 1.95 16 35 H 0.10 3.03 8.06 -2.39 -0.02 3.01 16 36 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 37 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.07 1.28 6.57 -2.39 -0.02 1.27 16 39 H 0.06 1.62 7.13 -2.39 -0.02 1.60 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.41 3.73 6.58 -92.70 -0.61 3.12 16 42 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.12 1.31 8.03 -2.39 -0.02 1.29 16 45 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 46 H 0.20 0.88 8.06 -2.91 -0.02 0.85 16 47 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 48 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -77.06 399.40 0.36 -76.69 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -1.00 Total: 40.49 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 7.55 Total: 17.34 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -8.13 Total: -129.48 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.10 Total: -50.02 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -77.06 0.36 -76.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.450 kcal (2) G-P(sol) polarization free energy of solvation -77.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds