Wall clock time and date at job start Tue Mar 31 2020 19:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47001 * 2 1 4 4 N 1.46901 * 109.47264 * 120.00424 * 2 1 3 5 5 C 1.46895 * 111.00123 * 274.99952 * 4 2 1 6 6 C 1.50700 * 109.47019 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00123 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99616 * 179.97438 * 6 5 4 9 9 C 1.37095 * 119.99663 * 179.97438 * 8 6 5 10 10 H 1.08006 * 120.00185 * 0.02562 * 9 8 6 11 11 C 1.38952 * 119.99770 * 180.02562 * 9 8 6 12 12 N 1.31403 * 120.00030 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99642 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47121 * 90.00235 * 13 11 9 15 15 H 1.48497 * 109.46810 * 209.99978 * 13 11 9 16 16 H 1.48497 * 109.47396 * 330.00183 * 13 11 9 17 17 C 1.53006 * 109.46811 * 240.00532 * 2 1 3 18 18 H 1.08998 * 109.46505 * 174.99683 * 17 2 1 19 19 C 1.52997 * 109.47127 * 294.99812 * 17 2 1 20 20 N 1.46500 * 109.47249 * 55.00322 * 17 2 1 21 21 C 1.34768 * 120.00056 * 154.99998 * 20 17 2 22 22 O 1.21278 * 120.00079 * 359.97438 * 21 20 17 23 23 C 1.50705 * 120.00177 * 179.97438 * 21 20 17 24 24 C 1.52997 * 109.47273 * 179.97438 * 23 21 20 25 25 N 1.46505 * 109.46955 * 180.02562 * 24 23 21 26 26 C 1.34949 * 126.03266 * 125.00255 * 25 24 23 27 27 C 1.35318 * 107.74300 * 179.97438 * 26 25 24 28 28 C 1.39868 * 107.92081 * 0.02562 * 27 26 25 29 29 N 1.30843 * 108.20439 * 359.73581 * 28 27 26 30 30 H 1.08998 * 109.47609 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46911 * 299.99548 * 1 2 3 32 32 H 1.09001 * 109.47273 * 59.99620 * 1 2 3 33 33 H 1.00906 * 110.99423 * 38.95491 * 4 2 1 34 34 H 1.09005 * 109.47193 * 300.00019 * 5 4 2 35 35 H 1.09001 * 109.46938 * 59.99950 * 5 4 2 36 36 H 0.96996 * 120.00050 * 0.02562 * 8 6 5 37 37 H 0.97002 * 120.00157 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47153 * 180.02562 * 19 17 2 39 39 H 1.09001 * 109.46832 * 60.00321 * 19 17 2 40 40 H 1.09004 * 109.47261 * 300.00303 * 19 17 2 41 41 H 0.97001 * 119.99547 * 334.99826 * 20 17 2 42 42 H 1.08996 * 109.47135 * 300.00342 * 23 21 20 43 43 H 1.09000 * 109.46519 * 60.00292 * 23 21 20 44 44 H 1.08996 * 109.47573 * 300.00384 * 24 23 21 45 45 H 1.08998 * 109.47067 * 60.00308 * 24 23 21 46 46 H 1.07998 * 126.13131 * 359.95710 * 26 25 24 47 47 H 1.08002 * 126.04216 * 179.97438 * 27 26 25 48 48 H 1.08002 * 125.90441 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 2.5874 -0.5222 3.5559 7 8 2.8669 -1.6993 3.4702 8 7 2.7284 0.1201 4.7325 9 6 3.1872 -0.5574 5.8325 10 1 3.4361 -1.6056 5.7562 11 6 3.3320 0.1046 7.0456 12 7 3.0287 1.3798 7.1385 13 14 3.9578 -0.8183 8.5443 14 1 5.4389 -0.7251 8.6002 15 1 3.3775 -0.2189 9.7727 16 1 3.5548 -2.2445 8.4513 17 6 2.0399 -0.7212 -1.2494 18 1 3.1262 -0.6442 -1.2953 19 6 1.6352 -2.1954 -1.1882 20 7 1.4558 -0.1034 -2.4425 21 6 2.0912 -0.1935 -3.6276 22 8 3.1467 -0.7855 -3.7063 23 6 1.4900 0.4415 -4.8550 24 6 2.4043 0.1947 -6.0567 25 7 1.8202 0.8126 -7.2497 26 6 2.4273 1.7053 -8.0595 27 6 1.5558 2.0296 -9.0426 28 6 0.3756 1.3109 -8.8258 29 7 0.5348 0.5770 -7.7544 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.4495 -1.4981 1.4099 34 1 2.7589 1.0460 2.1182 35 1 1.0871 0.6161 2.5525 36 1 2.5045 1.0614 4.8010 37 1 3.1294 1.8418 7.9854 38 1 1.9989 -2.7092 -2.0780 39 1 0.5489 -2.2722 -1.1423 40 1 2.0698 -2.6550 -0.3005 41 1 0.6118 0.3704 -2.3793 42 1 0.5104 0.0042 -5.0475 43 1 1.3838 1.5143 -4.6940 44 1 3.3838 0.6323 -5.8639 45 1 2.5110 -0.8780 -6.2178 46 1 3.4290 2.0918 -7.9435 47 1 1.7388 2.7217 -9.8512 48 1 -0.5124 1.3515 -9.4393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755227495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:54 Heat of formation + Delta-G solvation = 5.245415 kcal Electronic energy + Delta-G solvation = -27933.500020 eV Core-core repulsion = 23832.255017 eV Total energy + Delta-G solvation = -4101.245003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49410 -40.24898 -38.55741 -37.45739 -34.74431 -34.49986 -33.82874 -31.55035 -31.18797 -30.60009 -29.76937 -29.03589 -26.44402 -25.40597 -24.46540 -23.57054 -21.49483 -21.21418 -20.51154 -19.90678 -19.34484 -18.09066 -17.92345 -17.01028 -16.31021 -16.24703 -15.91330 -15.61537 -15.15632 -14.75104 -14.66527 -14.60942 -14.40385 -13.97543 -13.84992 -13.63665 -13.54980 -13.32397 -13.14338 -12.90270 -12.66246 -12.38845 -12.28442 -12.20225 -11.93665 -11.84732 -11.56965 -11.44815 -11.06856 -11.01402 -11.00313 -10.88653 -10.40687 -10.23761 -10.18691 -9.80220 -9.52749 -9.31095 -8.97690 -8.50742 -8.11751 -7.98095 -6.43609 -3.84412 1.52299 2.05359 2.33059 2.49566 2.90429 3.16885 3.25693 3.31491 3.88289 4.04703 4.10380 4.25885 4.32134 4.41493 4.52660 4.65908 4.70384 4.75872 4.88163 5.03747 5.04884 5.14791 5.23889 5.25251 5.31787 5.34104 5.35254 5.42416 5.57292 5.62850 5.64580 5.73055 5.80705 5.91208 5.95194 6.04621 6.22884 6.27824 6.30270 6.38047 6.61264 7.10641 7.22241 7.33273 7.53569 7.57839 7.92480 8.04260 8.59055 9.16051 9.52059 10.03346 10.74068 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033867 B = 0.001509 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.559331 B =18550.568798 C =18667.578705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.078 3.922 3 H 0.082 0.918 4 N -0.658 5.658 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.153 3.847 18 H 0.097 0.903 19 C -0.163 4.163 20 N -0.723 5.723 21 C 0.519 3.481 22 O -0.539 6.539 23 C -0.153 4.153 24 C 0.150 3.850 25 N -0.373 5.373 26 C 0.056 3.944 27 C -0.277 4.277 28 C 0.043 3.957 29 N -0.298 5.298 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.353 0.647 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.398 0.602 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.174 0.826 47 H 0.147 0.853 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 4.962 -28.080 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.034 4.034 3 H 0.100 0.900 4 N -0.291 5.291 5 C -0.081 4.081 6 C 0.225 3.775 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.048 3.952 18 H 0.115 0.885 19 C -0.221 4.221 20 N -0.376 5.376 21 C 0.304 3.696 22 O -0.416 6.416 23 C -0.194 4.194 24 C 0.028 3.972 25 N -0.155 5.155 26 C -0.091 4.091 27 C -0.307 4.307 28 C -0.143 4.143 29 N -0.120 5.120 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.174 0.826 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.234 0.766 42 H 0.126 0.874 43 H 0.116 0.884 44 H 0.124 0.876 45 H 0.113 0.887 46 H 0.191 0.809 47 H 0.164 0.836 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.882 3.017 -27.231 28.022 hybrid contribution -0.876 1.328 0.544 1.681 sum -6.758 4.345 -26.687 27.870 Atomic orbital electron populations 1.22622 0.97378 1.02777 1.02058 1.21723 0.92608 0.98168 0.90855 0.89965 1.60023 1.57699 1.09117 1.02254 1.21705 0.99968 0.95671 0.90773 1.19786 0.85256 0.88251 0.84162 1.90528 1.55300 1.16245 1.84587 1.41857 1.57761 1.12429 1.07935 1.19712 1.40048 0.96459 0.86733 0.87894 1.25257 0.97598 0.95775 0.99253 1.69607 1.48622 1.08875 1.27203 0.85857 0.78849 0.79485 0.80095 1.20371 1.20945 1.19416 1.20923 0.99513 0.92507 0.82216 0.88486 1.22175 1.01105 0.95588 1.03275 1.46215 1.25874 1.56984 1.08501 1.20285 0.84819 0.80077 0.84420 1.90751 1.22440 1.42818 1.85575 1.21884 1.01720 1.03276 0.92528 1.21430 0.95766 1.00013 0.79952 1.48800 1.11111 1.33743 1.21860 1.22641 0.99794 0.93926 0.92693 1.21537 0.94951 1.09803 1.04403 1.23914 0.99357 0.95487 0.95498 1.77343 0.97184 1.23846 1.13583 0.91578 0.91913 0.92533 0.82607 0.89570 0.93758 0.77484 0.91875 0.92560 0.92841 0.89933 0.76609 0.87428 0.88352 0.87612 0.88716 0.80877 0.83556 0.80091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 8.68 37.16 0.32 -1.34 16 2 C 0.08 0.85 2.64 -67.71 -0.18 0.67 16 3 H 0.08 0.88 7.80 -51.93 -0.41 0.48 16 4 N -0.66 -9.84 5.23 -107.99 -0.56 -10.41 16 5 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 6 C 0.44 10.16 7.82 -10.98 -0.09 10.08 16 7 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 8 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 9 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 10 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 13 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 C 0.15 1.69 2.63 -67.93 -0.18 1.51 16 18 H 0.10 1.34 7.58 -51.93 -0.39 0.94 16 19 C -0.16 -1.85 8.86 37.16 0.33 -1.53 16 20 N -0.72 -6.14 4.99 -53.81 -0.27 -6.40 16 21 C 0.52 4.93 7.79 -10.99 -0.09 4.84 16 22 O -0.54 -7.18 15.64 5.56 0.09 -7.09 16 23 C -0.15 -1.04 5.89 -27.88 -0.16 -1.20 16 24 C 0.15 1.10 5.80 -4.04 -0.02 1.07 16 25 N -0.37 -3.07 3.68 -61.37 -0.23 -3.29 16 26 C 0.06 0.37 11.45 -17.22 -0.20 0.18 16 27 C -0.28 -1.85 10.80 -40.01 -0.43 -2.29 16 28 C 0.04 0.33 12.03 -17.36 -0.21 0.12 16 29 N -0.30 -2.88 12.42 30.63 0.38 -2.50 16 30 H 0.07 0.59 6.55 -51.93 -0.34 0.25 16 31 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 32 H 0.06 0.37 6.29 -51.93 -0.33 0.04 16 33 H 0.35 5.48 7.39 -39.29 -0.29 5.19 16 34 H 0.09 1.34 8.06 -51.93 -0.42 0.92 16 35 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 36 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 40 H 0.08 1.07 7.13 -51.93 -0.37 0.70 16 41 H 0.40 2.41 6.58 -40.82 -0.27 2.14 16 42 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.11 0.66 8.03 -51.93 -0.42 0.24 16 45 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 46 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 47 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 399.40 15.07 6.02 6.02 Total: -1.00 -34.42 399.40 -7.15 -41.57 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -7.13 Total: 14.38 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.17 Total: 4.99 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.01 Total: -60.32 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.17 Total: -22.57 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.42 -7.15 -41.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.819 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds