Wall clock time and date at job start Tue Mar 31 2020 19:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47001 * 2 1 4 4 N 1.46901 * 109.47264 * 120.00424 * 2 1 3 5 5 C 1.46895 * 111.00123 * 274.99952 * 4 2 1 6 6 C 1.50700 * 109.47019 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00123 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99616 * 179.97438 * 6 5 4 9 9 C 1.37095 * 119.99663 * 179.97438 * 8 6 5 10 10 H 1.08006 * 120.00185 * 0.02562 * 9 8 6 11 11 C 1.38952 * 119.99770 * 180.02562 * 9 8 6 12 12 N 1.31403 * 120.00030 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99642 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47121 * 90.00235 * 13 11 9 15 15 H 1.48497 * 109.46810 * 209.99978 * 13 11 9 16 16 H 1.48497 * 109.47396 * 330.00183 * 13 11 9 17 17 C 1.53006 * 109.46811 * 240.00532 * 2 1 3 18 18 H 1.08998 * 109.46505 * 174.99683 * 17 2 1 19 19 C 1.52997 * 109.47127 * 294.99812 * 17 2 1 20 20 N 1.46500 * 109.47249 * 55.00322 * 17 2 1 21 21 C 1.34768 * 120.00056 * 154.99998 * 20 17 2 22 22 O 1.21278 * 120.00079 * 359.97438 * 21 20 17 23 23 C 1.50705 * 120.00177 * 179.97438 * 21 20 17 24 24 C 1.52997 * 109.47273 * 179.97438 * 23 21 20 25 25 N 1.46505 * 109.46955 * 180.02562 * 24 23 21 26 26 C 1.34949 * 126.03266 * 125.00255 * 25 24 23 27 27 C 1.35318 * 107.74300 * 179.97438 * 26 25 24 28 28 C 1.39868 * 107.92081 * 0.02562 * 27 26 25 29 29 N 1.30843 * 108.20439 * 359.73581 * 28 27 26 30 30 H 1.08998 * 109.47609 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46911 * 299.99548 * 1 2 3 32 32 H 1.09001 * 109.47273 * 59.99620 * 1 2 3 33 33 H 1.00906 * 110.99423 * 38.95491 * 4 2 1 34 34 H 1.09005 * 109.47193 * 300.00019 * 5 4 2 35 35 H 1.09001 * 109.46938 * 59.99950 * 5 4 2 36 36 H 0.96996 * 120.00050 * 0.02562 * 8 6 5 37 37 H 0.97002 * 120.00157 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47153 * 180.02562 * 19 17 2 39 39 H 1.09001 * 109.46832 * 60.00321 * 19 17 2 40 40 H 1.09004 * 109.47261 * 300.00303 * 19 17 2 41 41 H 0.97001 * 119.99547 * 334.99826 * 20 17 2 42 42 H 1.08996 * 109.47135 * 300.00342 * 23 21 20 43 43 H 1.09000 * 109.46519 * 60.00292 * 23 21 20 44 44 H 1.08996 * 109.47573 * 300.00384 * 24 23 21 45 45 H 1.08998 * 109.47067 * 60.00308 * 24 23 21 46 46 H 1.07998 * 126.13131 * 359.95710 * 26 25 24 47 47 H 1.08002 * 126.04216 * 179.97438 * 27 26 25 48 48 H 1.08002 * 125.90441 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 2.5874 -0.5222 3.5559 7 8 2.8669 -1.6993 3.4702 8 7 2.7284 0.1201 4.7325 9 6 3.1872 -0.5574 5.8325 10 1 3.4361 -1.6056 5.7562 11 6 3.3320 0.1046 7.0456 12 7 3.0287 1.3798 7.1385 13 14 3.9578 -0.8183 8.5443 14 1 5.4389 -0.7251 8.6002 15 1 3.3775 -0.2189 9.7727 16 1 3.5548 -2.2445 8.4513 17 6 2.0399 -0.7212 -1.2494 18 1 3.1262 -0.6442 -1.2953 19 6 1.6352 -2.1954 -1.1882 20 7 1.4558 -0.1034 -2.4425 21 6 2.0912 -0.1935 -3.6276 22 8 3.1467 -0.7855 -3.7063 23 6 1.4900 0.4415 -4.8550 24 6 2.4043 0.1947 -6.0567 25 7 1.8202 0.8126 -7.2497 26 6 2.4273 1.7053 -8.0595 27 6 1.5558 2.0296 -9.0426 28 6 0.3756 1.3109 -8.8258 29 7 0.5348 0.5770 -7.7544 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.4495 -1.4981 1.4099 34 1 2.7589 1.0460 2.1182 35 1 1.0871 0.6161 2.5525 36 1 2.5045 1.0614 4.8010 37 1 3.1294 1.8418 7.9854 38 1 1.9989 -2.7092 -2.0780 39 1 0.5489 -2.2722 -1.1423 40 1 2.0698 -2.6550 -0.3005 41 1 0.6118 0.3704 -2.3793 42 1 0.5104 0.0042 -5.0475 43 1 1.3838 1.5143 -4.6940 44 1 3.3838 0.6323 -5.8639 45 1 2.5110 -0.8780 -6.2178 46 1 3.4290 2.0918 -7.9435 47 1 1.7388 2.7217 -9.8512 48 1 -0.5124 1.3515 -9.4393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755227495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:53 Heat of formation + Delta-G solvation = -21.156619 kcal Electronic energy + Delta-G solvation = -27934.644898 eV Core-core repulsion = 23832.255017 eV Total energy + Delta-G solvation = -4102.389881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02167 -41.08309 -40.18380 -38.64340 -36.07346 -35.41844 -35.22170 -33.28277 -32.35788 -31.25417 -30.45217 -29.85654 -27.98569 -26.17909 -25.87472 -24.64894 -22.04803 -21.84219 -21.18733 -21.14414 -20.77382 -19.93119 -18.73784 -17.92916 -17.40992 -17.13871 -16.91272 -16.83517 -16.39186 -16.11467 -15.71902 -15.61538 -15.30473 -15.21482 -15.04164 -14.69399 -14.34069 -14.22878 -14.01886 -13.72323 -13.55359 -13.50688 -13.33239 -13.24735 -13.15558 -13.04188 -12.87468 -12.56486 -12.41683 -12.40460 -12.12339 -11.88396 -11.82875 -11.55023 -11.50613 -11.02808 -10.38511 -10.35615 -10.12962 -10.01142 -9.49539 -9.31327 -8.46728 -5.95203 1.00389 1.37937 1.41955 1.50688 1.54358 1.56910 1.99713 2.05950 2.13993 2.30659 2.99140 3.20893 3.52713 3.56105 3.64542 3.77386 3.88725 3.91690 4.12033 4.19684 4.22321 4.29747 4.34990 4.44909 4.46487 4.53452 4.55999 4.62217 4.71844 4.73921 4.85439 4.87537 4.94572 4.96087 5.03079 5.19880 5.21836 5.41008 5.41201 5.49400 5.79111 5.89044 6.09893 6.13440 6.39906 6.49949 6.60542 6.80208 7.13064 7.20432 7.56808 8.12355 8.70536 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033867 B = 0.001509 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.559331 B =18550.568798 C =18667.578705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.084 3.916 3 H 0.091 0.909 4 N -0.676 5.676 5 C 0.068 3.932 6 C 0.437 3.563 7 O -0.624 6.624 8 N -0.573 5.573 9 C -0.335 4.335 10 H 0.078 0.922 11 C -0.011 4.011 12 N -0.919 5.919 13 Si 0.991 3.009 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.273 1.273 17 C 0.160 3.840 18 H 0.066 0.934 19 C -0.157 4.157 20 N -0.709 5.709 21 C 0.519 3.481 22 O -0.580 6.580 23 C -0.137 4.137 24 C 0.150 3.850 25 N -0.382 5.382 26 C 0.051 3.949 27 C -0.286 4.286 28 C 0.037 3.963 29 N -0.337 5.337 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.348 0.652 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.414 0.586 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.079 0.921 46 H 0.202 0.798 47 H 0.167 0.833 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 6.721 -29.022 30.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.027 4.027 3 H 0.109 0.891 4 N -0.309 5.309 5 C -0.064 4.064 6 C 0.224 3.776 7 O -0.510 6.510 8 N -0.210 5.210 9 C -0.465 4.465 10 H 0.096 0.904 11 C -0.211 4.211 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.198 1.198 15 H -0.195 1.195 16 H -0.198 1.198 17 C 0.055 3.945 18 H 0.084 0.916 19 C -0.215 4.215 20 N -0.363 5.363 21 C 0.306 3.694 22 O -0.460 6.460 23 C -0.178 4.178 24 C 0.028 3.972 25 N -0.164 5.164 26 C -0.095 4.095 27 C -0.315 4.315 28 C -0.149 4.149 29 N -0.159 5.159 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.168 0.832 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.253 0.747 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.097 0.903 46 H 0.218 0.782 47 H 0.184 0.816 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.000 4.825 -28.194 29.448 hybrid contribution -0.532 0.779 0.730 1.193 sum -7.533 5.604 -27.464 29.024 Atomic orbital electron populations 1.22563 0.95084 1.03200 1.03462 1.21719 0.94334 0.97892 0.88724 0.89065 1.59964 1.58866 1.09238 1.02791 1.21540 1.01308 0.95185 0.88410 1.20925 0.83436 0.88031 0.85199 1.90498 1.56639 1.18406 1.85461 1.41920 1.58339 1.12589 1.08170 1.19666 1.42267 0.95950 0.88578 0.90406 1.26000 0.97188 0.96606 1.01301 1.69661 1.48566 1.09643 1.28140 0.84952 0.78448 0.78054 0.77031 1.19791 1.19473 1.19814 1.20636 0.97951 0.92558 0.83368 0.91553 1.22091 1.02090 0.95646 1.01669 1.46023 1.26252 1.56539 1.07466 1.20745 0.84168 0.79299 0.85157 1.90741 1.24429 1.44681 1.86181 1.21761 1.01287 1.04010 0.90694 1.21402 0.96369 0.99274 0.80126 1.48861 1.11024 1.34290 1.22237 1.23213 1.00921 0.93173 0.92177 1.21879 0.94595 1.10026 1.04972 1.24417 1.00504 0.94852 0.95107 1.77289 0.98319 1.25367 1.14930 0.91682 0.92027 0.89603 0.83158 0.87910 0.91054 0.76940 0.91312 0.93773 0.90956 0.91922 0.74735 0.86998 0.86458 0.86648 0.90280 0.78164 0.81592 0.77979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 8.68 71.98 0.62 -2.06 16 2 C 0.08 1.68 2.64 44.92 0.12 1.80 16 3 H 0.09 1.71 7.80 -2.39 -0.02 1.69 16 4 N -0.68 -19.74 5.23 -495.57 -2.59 -22.33 16 5 C 0.07 2.18 5.97 85.56 0.51 2.69 16 6 C 0.44 20.37 7.82 87.66 0.69 21.06 16 7 O -0.62 -34.29 15.78 -3.05 -0.05 -34.33 16 8 N -0.57 -29.01 5.29 -306.98 -1.62 -30.64 16 9 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 10 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 11 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 12 N -0.92 -49.14 13.05 21.66 0.28 -48.85 16 13 Si 0.99 42.83 29.55 68.60 2.03 44.85 16 14 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 C 0.16 3.42 2.63 44.99 0.12 3.54 16 18 H 0.07 1.86 7.58 -2.39 -0.02 1.85 16 19 C -0.16 -3.55 8.86 71.98 0.64 -2.91 16 20 N -0.71 -10.81 4.99 -442.54 -2.21 -13.01 16 21 C 0.52 9.36 7.79 87.66 0.68 10.05 16 22 O -0.58 -15.61 15.64 -3.02 -0.05 -15.66 16 23 C -0.14 -1.64 5.89 29.85 0.18 -1.46 16 24 C 0.15 2.08 5.80 86.38 0.50 2.58 16 25 N -0.38 -5.84 3.68 -348.06 -1.28 -7.12 16 26 C 0.05 0.59 11.45 83.54 0.96 1.55 16 27 C -0.29 -3.28 10.80 21.99 0.24 -3.04 16 28 C 0.04 0.51 12.03 85.23 1.02 1.53 16 29 N -0.34 -6.20 12.42 -57.02 -0.71 -6.91 16 30 H 0.06 0.99 6.55 -2.39 -0.02 0.98 16 31 H 0.06 0.96 7.45 -2.39 -0.02 0.94 16 32 H 0.09 0.75 6.29 -2.39 -0.02 0.74 16 33 H 0.35 10.75 7.39 -89.69 -0.66 10.09 16 34 H 0.10 3.01 8.06 -2.38 -0.02 2.99 16 35 H 0.07 1.94 7.44 -2.39 -0.02 1.93 16 36 H 0.40 18.96 7.90 -92.71 -0.73 18.22 16 37 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 38 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.34 6.56 -2.39 -0.02 1.32 16 40 H 0.06 1.68 7.13 -2.38 -0.02 1.66 16 41 H 0.41 3.72 6.58 -92.71 -0.61 3.11 16 42 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 43 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.12 1.33 8.03 -2.39 -0.02 1.32 16 45 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 46 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 47 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 48 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -76.73 399.40 0.36 -76.37 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -1.00 Total: 40.60 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 7.55 Total: 17.03 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -8.13 Total: -128.86 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.10 Total: -50.00 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -76.73 0.36 -76.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.212 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds