Wall clock time and date at job start Tue Mar 31 2020 20:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.50701 * 109.47355 * 180.02562 * 8 6 5 10 10 C 1.34667 * 126.58844 * 85.02876 * 9 8 6 11 11 N 1.34124 * 108.02146 * 179.97438 * 10 9 8 12 12 C 1.30500 * 109.25545 * 359.97438 * 11 10 9 13 13 N 1.35052 * 108.69977 * 359.77092 * 12 11 10 14 14 C 1.46497 * 126.40063 * 180.26393 * 13 12 11 15 15 N 1.46906 * 109.46590 * 119.99337 * 2 1 3 16 16 C 1.46902 * 111.00095 * 58.95791 * 15 2 1 17 17 C 1.46903 * 110.99908 * 294.99829 * 15 2 1 18 18 C 1.50701 * 109.46895 * 189.99921 * 17 15 2 19 19 O 1.21295 * 119.99869 * 0.02562 * 18 17 15 20 20 N 1.34778 * 119.99968 * 180.02562 * 18 17 15 21 21 C 1.37101 * 119.99984 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99899 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99884 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99997 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00000 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46803 * 60.00204 * 25 23 21 27 27 H 1.48501 * 109.47197 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47002 * 300.00334 * 25 23 21 29 29 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 31 31 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 32 32 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 33 33 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 36 36 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 37 37 H 1.08004 * 125.98758 * 359.95636 * 10 9 8 38 38 H 1.08001 * 125.65161 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.47221 * 270.12516 * 14 13 12 40 40 H 1.09001 * 109.46861 * 30.12380 * 14 13 12 41 41 H 1.08992 * 109.47036 * 150.12464 * 14 13 12 42 42 H 1.08996 * 109.47065 * 60.00034 * 16 15 2 43 43 H 1.08998 * 109.46872 * 179.97438 * 16 15 2 44 44 H 1.09000 * 109.46571 * 299.99563 * 16 15 2 45 45 H 1.08993 * 109.47472 * 310.00065 * 17 15 2 46 46 H 1.09002 * 109.46672 * 70.00438 * 17 15 2 47 47 H 0.96997 * 119.99819 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00388 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 6 6.1761 -2.2623 -3.3525 10 6 6.4486 -1.7077 -4.5491 11 7 6.8706 -2.6802 -5.3707 12 6 6.8706 -3.8163 -4.7286 13 7 6.4491 -3.5990 -3.4641 14 6 6.3074 -4.6061 -2.4098 15 7 2.0196 -0.6924 1.1996 16 6 1.5282 -2.0760 1.2462 17 6 1.6486 0.0395 2.4181 18 6 2.3677 -0.5568 3.6007 19 8 3.1160 -1.4984 3.4438 20 7 2.1793 -0.0437 4.8327 21 6 2.8338 -0.5858 5.9085 22 1 3.5001 -1.4242 5.7688 23 6 2.6400 -0.0565 7.1785 24 7 1.8297 0.9640 7.3484 25 14 3.5313 -0.7955 8.6444 26 1 4.9980 -0.6952 8.4339 27 1 3.1568 -0.0553 9.8761 28 1 3.1483 -2.2231 8.7883 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5136 -0.8901 32 1 1.7518 -0.1585 -2.1369 33 1 1.6055 -1.7199 -1.2949 34 1 3.9825 -0.4627 -0.4313 35 1 6.1124 -0.5505 -2.0802 36 1 5.9587 -2.1092 -1.2348 37 1 6.3450 -0.6630 -4.8027 38 1 7.1628 -4.7715 -5.1393 39 1 5.3033 -5.0288 -2.4436 40 1 7.0403 -5.3982 -2.5632 41 1 6.4732 -4.1408 -1.4382 42 1 1.8763 -2.6150 0.3651 43 1 1.9059 -2.5656 2.1439 44 1 0.4384 -2.0741 1.2642 45 1 1.9296 1.0872 2.3125 46 1 0.5721 -0.0342 2.5725 47 1 1.5811 0.7095 4.9581 48 1 1.6946 1.3338 8.2349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755325443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:07 Heat of formation + Delta-G solvation = 1.463021 kcal Electronic energy + Delta-G solvation = -29125.870719 eV Core-core repulsion = 25024.461699 eV Total energy + Delta-G solvation = -4101.409020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22636 -39.82004 -38.85393 -37.34616 -34.37632 -34.19992 -33.85142 -32.43452 -31.32562 -30.90408 -28.08102 -27.68228 -27.15022 -25.86459 -25.34853 -23.81499 -21.57779 -21.01020 -20.23603 -19.64402 -19.13343 -17.89735 -17.32914 -17.12801 -16.61288 -16.11295 -15.73377 -15.56625 -15.23071 -14.91108 -14.71661 -14.42523 -14.13832 -13.92594 -13.78252 -13.57816 -13.30180 -13.16647 -13.07647 -13.02278 -12.93630 -12.76700 -12.34628 -12.18510 -11.83608 -11.82267 -11.50930 -11.28210 -11.25834 -10.97311 -10.79627 -10.49544 -10.27407 -10.09573 -9.98852 -9.66979 -9.52716 -9.04152 -8.54767 -8.45295 -8.04754 -7.93393 -6.47605 -3.88703 1.85001 2.57759 2.63862 3.02145 3.14743 3.21356 3.24822 3.30846 3.83374 3.89997 4.18693 4.35846 4.47919 4.58765 4.65009 4.76104 4.84470 4.86721 4.96467 5.06948 5.10533 5.15919 5.20467 5.23173 5.32338 5.40001 5.48781 5.51697 5.63732 5.68732 5.72383 5.84329 5.86219 5.93562 6.11549 6.19757 6.21063 6.42326 6.49512 6.61639 7.04234 7.15340 7.27142 7.48944 7.54609 7.95977 7.99709 8.21949 8.55178 9.11856 9.48085 9.99467 10.69904 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.002275 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.768234 B =12303.544525 C =13671.317542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.089 0.911 4 C 0.132 3.868 5 N -0.713 5.713 6 C 0.511 3.489 7 O -0.540 6.540 8 C -0.067 4.067 9 C -0.003 4.003 10 C -0.012 4.012 11 N -0.495 5.495 12 C 0.179 3.821 13 N -0.454 5.454 14 C 0.069 3.931 15 N -0.510 5.510 16 C 0.017 3.983 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.166 0.834 38 H 0.203 0.797 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 -3.554 -16.726 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.046 4.046 3 H 0.107 0.893 4 C 0.008 3.992 5 N -0.366 5.366 6 C 0.297 3.703 7 O -0.417 6.417 8 C -0.108 4.108 9 C -0.118 4.118 10 C -0.160 4.160 11 N -0.213 5.213 12 C -0.103 4.103 13 N -0.137 5.137 14 C -0.073 4.073 15 N -0.234 5.234 16 C -0.131 4.131 17 C -0.087 4.087 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.249 0.751 35 H 0.135 0.865 36 H 0.120 0.880 37 H 0.183 0.817 38 H 0.220 0.780 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.038 0.962 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.880 -4.434 -18.047 18.984 hybrid contribution -1.038 0.208 2.256 2.492 sum 2.842 -4.226 -15.791 16.592 Atomic orbital electron populations 1.22406 0.96626 1.02812 1.02727 1.22054 0.93501 0.98687 0.90350 0.89280 1.21359 0.80283 1.00812 0.96744 1.45839 1.07695 1.59337 1.23718 1.20436 0.89450 0.78023 0.82431 1.90725 1.70086 1.47620 1.33258 1.20029 0.92894 1.02442 0.95433 1.20426 1.09123 0.83769 0.98497 1.21952 1.05393 0.99272 0.89414 1.70248 1.20226 0.98626 1.32192 1.24855 1.04467 0.99713 0.81244 1.45213 1.49084 1.07484 1.11912 1.22072 1.03698 0.91216 0.90363 1.61830 1.58885 1.02462 1.00201 1.22590 0.96806 0.89486 1.04208 1.21879 0.98168 0.98429 0.90232 1.19722 0.86722 0.86929 0.83763 1.90476 1.40872 1.30272 1.84761 1.41868 1.41426 1.31152 1.05527 1.19625 1.23524 1.14886 0.84897 0.87997 1.25261 0.97286 0.96313 0.99043 1.69597 1.36516 1.23781 1.24336 0.85927 0.79620 0.78900 0.79827 1.19885 1.20969 1.19939 0.91871 0.91643 0.91885 0.91282 0.91574 0.75136 0.86509 0.88020 0.81663 0.78007 0.90339 0.89283 0.89496 0.92226 0.88648 0.96176 0.89442 0.93194 0.77511 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 8.50 37.16 0.32 -1.50 16 2 C 0.06 0.68 2.50 -67.71 -0.17 0.51 16 3 H 0.09 0.88 8.03 -51.93 -0.42 0.47 16 4 C 0.13 1.45 4.69 -4.04 -0.02 1.43 16 5 N -0.71 -7.77 5.39 -60.30 -0.32 -8.10 16 6 C 0.51 6.13 7.82 -10.98 -0.09 6.04 16 7 O -0.54 -8.62 16.03 5.55 0.09 -8.53 16 8 C -0.07 -0.62 6.04 -29.03 -0.18 -0.80 16 9 C 0.00 -0.04 5.45 -81.60 -0.44 -0.48 16 10 C -0.01 -0.15 11.79 -17.81 -0.21 -0.36 16 11 N -0.50 -6.71 11.25 -14.66 -0.16 -6.87 16 12 C 0.18 1.91 12.56 -90.37 -1.14 0.78 16 13 N -0.45 -4.64 3.15 -121.37 -0.38 -5.02 16 14 C 0.07 0.46 11.00 59.85 0.66 1.12 16 15 N -0.51 -7.13 3.93 -236.32 -0.93 -8.06 16 16 C 0.02 0.25 8.46 60.07 0.51 0.75 16 17 C 0.04 0.70 4.89 -4.97 -0.02 0.67 16 18 C 0.44 9.62 7.47 -10.98 -0.08 9.53 16 19 O -0.58 -14.32 13.91 5.54 0.08 -14.24 16 20 N -0.56 -13.48 5.29 -10.96 -0.06 -13.53 16 21 C -0.30 -7.99 9.68 -14.93 -0.14 -8.13 16 22 H 0.10 2.84 7.16 -52.49 -0.38 2.47 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.74 13.05 55.50 0.72 -23.01 16 25 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 29 H 0.06 0.64 6.38 -51.93 -0.33 0.31 16 30 H 0.06 0.66 6.75 -51.93 -0.35 0.31 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.81 6.70 -51.93 -0.35 0.46 16 34 H 0.41 4.28 8.14 -40.82 -0.33 3.95 16 35 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.80 7.09 -51.93 -0.37 0.43 16 37 H 0.17 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.53 7.11 -51.93 -0.37 0.16 16 42 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 43 H 0.10 1.75 5.82 -51.93 -0.30 1.45 16 44 H 0.02 0.27 6.28 -51.93 -0.33 -0.06 16 45 H 0.09 1.24 8.00 -51.93 -0.42 0.82 16 46 H 0.05 0.74 6.94 -51.93 -0.36 0.38 16 47 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 48 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -34.64 393.11 -8.22 -42.85 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -7.05 Total: 13.18 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -1.10 Total: 10.07 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -1.13 Total: -64.60 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.64 -8.22 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755325443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.318 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds