Wall clock time and date at job start Tue Mar 31 2020 20:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.50701 * 109.47355 * 180.02562 * 8 6 5 10 10 C 1.34667 * 126.58844 * 85.02876 * 9 8 6 11 11 N 1.34124 * 108.02146 * 179.97438 * 10 9 8 12 12 C 1.30500 * 109.25545 * 359.97438 * 11 10 9 13 13 N 1.35052 * 108.69977 * 359.77092 * 12 11 10 14 14 C 1.46497 * 126.40063 * 180.26393 * 13 12 11 15 15 N 1.46906 * 109.46590 * 119.99337 * 2 1 3 16 16 C 1.46902 * 111.00095 * 58.95791 * 15 2 1 17 17 C 1.46903 * 110.99908 * 294.99829 * 15 2 1 18 18 C 1.50701 * 109.46895 * 189.99921 * 17 15 2 19 19 O 1.21295 * 119.99869 * 0.02562 * 18 17 15 20 20 N 1.34778 * 119.99968 * 180.02562 * 18 17 15 21 21 C 1.37101 * 119.99984 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99899 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99884 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99997 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00000 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46803 * 60.00204 * 25 23 21 27 27 H 1.48501 * 109.47197 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47002 * 300.00334 * 25 23 21 29 29 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 31 31 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 32 32 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 33 33 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 36 36 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 37 37 H 1.08004 * 125.98758 * 359.95636 * 10 9 8 38 38 H 1.08001 * 125.65161 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.47221 * 270.12516 * 14 13 12 40 40 H 1.09001 * 109.46861 * 30.12380 * 14 13 12 41 41 H 1.08992 * 109.47036 * 150.12464 * 14 13 12 42 42 H 1.08996 * 109.47065 * 60.00034 * 16 15 2 43 43 H 1.08998 * 109.46872 * 179.97438 * 16 15 2 44 44 H 1.09000 * 109.46571 * 299.99563 * 16 15 2 45 45 H 1.08993 * 109.47472 * 310.00065 * 17 15 2 46 46 H 1.09002 * 109.46672 * 70.00438 * 17 15 2 47 47 H 0.96997 * 119.99819 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00388 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 6 6.1761 -2.2623 -3.3525 10 6 6.4486 -1.7077 -4.5491 11 7 6.8706 -2.6802 -5.3707 12 6 6.8706 -3.8163 -4.7286 13 7 6.4491 -3.5990 -3.4641 14 6 6.3074 -4.6061 -2.4098 15 7 2.0196 -0.6924 1.1996 16 6 1.5282 -2.0760 1.2462 17 6 1.6486 0.0395 2.4181 18 6 2.3677 -0.5568 3.6007 19 8 3.1160 -1.4984 3.4438 20 7 2.1793 -0.0437 4.8327 21 6 2.8338 -0.5858 5.9085 22 1 3.5001 -1.4242 5.7688 23 6 2.6400 -0.0565 7.1785 24 7 1.8297 0.9640 7.3484 25 14 3.5313 -0.7955 8.6444 26 1 4.9980 -0.6952 8.4339 27 1 3.1568 -0.0553 9.8761 28 1 3.1483 -2.2231 8.7883 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5136 -0.8901 32 1 1.7518 -0.1585 -2.1369 33 1 1.6055 -1.7199 -1.2949 34 1 3.9825 -0.4627 -0.4313 35 1 6.1124 -0.5505 -2.0802 36 1 5.9587 -2.1092 -1.2348 37 1 6.3450 -0.6630 -4.8027 38 1 7.1628 -4.7715 -5.1393 39 1 5.3033 -5.0288 -2.4436 40 1 7.0403 -5.3982 -2.5632 41 1 6.4732 -4.1408 -1.4382 42 1 1.8763 -2.6150 0.3651 43 1 1.9059 -2.5656 2.1439 44 1 0.4384 -2.0741 1.2642 45 1 1.9296 1.0872 2.3125 46 1 0.5721 -0.0342 2.5725 47 1 1.5811 0.7095 4.9581 48 1 1.6946 1.3338 8.2349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755325443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:07 Heat of formation + Delta-G solvation = -23.922825 kcal Electronic energy + Delta-G solvation = -29126.971532 eV Core-core repulsion = 25024.461699 eV Total energy + Delta-G solvation = -4102.509833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.02898 -40.87979 -40.22962 -38.71737 -35.94997 -35.20711 -34.95448 -33.29917 -33.20221 -31.91471 -29.35988 -28.59278 -27.79745 -26.99266 -26.68081 -25.23614 -22.39696 -21.89140 -21.38473 -20.76262 -20.42947 -19.76784 -18.24829 -17.95540 -17.84709 -17.12237 -16.87420 -16.55280 -16.37504 -16.22811 -16.18679 -15.75931 -15.24186 -15.08494 -14.94004 -14.59541 -14.51577 -14.15700 -13.96946 -13.91337 -13.75478 -13.62586 -13.42839 -13.36631 -13.06008 -12.96531 -12.83856 -12.75347 -12.42532 -12.37119 -12.24595 -12.11595 -11.74650 -11.40069 -11.02152 -10.93385 -10.47518 -10.22735 -9.99095 -9.95172 -9.30257 -9.16609 -8.42948 -5.90709 1.03904 1.41303 1.43501 1.53471 1.67568 1.92712 2.11824 2.16053 2.29832 2.43403 2.79697 3.24759 3.48317 3.59419 3.76455 3.89947 3.97423 3.99548 4.10941 4.14667 4.28360 4.32885 4.33649 4.37490 4.46714 4.56513 4.58250 4.60346 4.64346 4.69197 4.70946 4.80429 4.84053 4.86040 5.02764 5.20967 5.31094 5.40869 5.44512 5.52315 5.78731 5.90277 6.08938 6.21249 6.31312 6.64640 6.65472 7.12686 7.17730 7.31130 7.62785 8.18322 8.74107 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.002275 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.768234 B =12303.544525 C =13671.317542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 H 0.107 0.893 4 C 0.135 3.865 5 N -0.707 5.707 6 C 0.513 3.487 7 O -0.583 6.583 8 C -0.061 4.061 9 C -0.011 4.011 10 C -0.040 4.040 11 N -0.536 5.536 12 C 0.178 3.822 13 N -0.457 5.457 14 C 0.064 3.936 15 N -0.518 5.518 16 C 0.027 3.973 17 C 0.057 3.943 18 C 0.444 3.556 19 O -0.611 6.611 20 N -0.577 5.577 21 C -0.327 4.327 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.989 3.011 26 H -0.271 1.271 27 H -0.274 1.274 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.417 0.583 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.170 0.830 38 H 0.237 0.763 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.032 0.968 45 H 0.113 0.887 46 H 0.066 0.934 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 -3.257 -16.632 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.037 4.037 3 H 0.125 0.875 4 C 0.011 3.989 5 N -0.358 5.358 6 C 0.300 3.700 7 O -0.464 6.464 8 C -0.101 4.101 9 C -0.127 4.127 10 C -0.188 4.188 11 N -0.255 5.255 12 C -0.104 4.104 13 N -0.139 5.139 14 C -0.078 4.078 15 N -0.242 5.242 16 C -0.121 4.121 17 C -0.074 4.074 18 C 0.231 3.769 19 O -0.497 6.497 20 N -0.215 5.215 21 C -0.457 4.457 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.254 0.746 35 H 0.159 0.841 36 H 0.136 0.864 37 H 0.187 0.813 38 H 0.253 0.747 39 H 0.092 0.908 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.050 0.950 45 H 0.131 0.869 46 H 0.084 0.916 47 H 0.229 0.771 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.869 -4.120 -17.937 18.806 hybrid contribution -1.049 0.065 2.134 2.379 sum 2.820 -4.054 -15.803 16.556 Atomic orbital electron populations 1.22378 0.95455 1.02729 1.03703 1.22086 0.94371 0.98924 0.88337 0.87550 1.21342 0.80240 1.00247 0.97112 1.45833 1.07786 1.58718 1.23494 1.20831 0.90416 0.77081 0.81722 1.90709 1.71144 1.49574 1.34925 1.20090 0.90913 1.03925 0.95212 1.20702 1.08711 0.84508 0.98732 1.22213 1.06567 0.99792 0.90241 1.70198 1.21874 0.99852 1.33543 1.25549 1.03295 1.00259 0.81344 1.45464 1.48324 1.07652 1.12473 1.22316 1.04419 0.91258 0.89757 1.61763 1.59620 1.02177 1.00630 1.22390 0.97367 0.89887 1.02501 1.21744 0.98117 0.99179 0.88340 1.20779 0.85704 0.85864 0.84536 1.90463 1.42175 1.31604 1.85459 1.41946 1.41943 1.31667 1.05911 1.19582 1.24446 1.15177 0.86516 0.90234 1.25980 0.97835 0.96599 1.00973 1.69661 1.37189 1.24415 1.25019 0.85044 0.78492 0.78149 0.77008 1.19671 1.19863 1.19866 0.92498 0.91584 0.90005 0.90575 0.92868 0.74608 0.84053 0.86359 0.81286 0.74677 0.90792 0.86382 0.88806 0.91495 0.92567 0.94980 0.86911 0.91566 0.77140 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.50 71.98 0.61 -2.42 16 2 C 0.07 1.33 2.50 44.91 0.11 1.44 16 3 H 0.11 1.71 8.03 -2.39 -0.02 1.69 16 4 C 0.13 2.70 4.69 86.38 0.40 3.11 16 5 N -0.71 -14.23 5.39 -463.07 -2.50 -16.73 16 6 C 0.51 11.76 7.82 87.66 0.69 12.44 16 7 O -0.58 -18.48 16.03 -3.04 -0.05 -18.52 16 8 C -0.06 -1.04 6.04 29.10 0.18 -0.87 16 9 C -0.01 -0.24 5.45 40.95 0.22 -0.01 16 10 C -0.04 -1.04 11.79 83.52 0.98 -0.05 16 11 N -0.54 -14.59 11.25 -200.30 -2.25 -16.84 16 12 C 0.18 3.63 12.56 180.26 2.26 5.90 16 13 N -0.46 -8.83 3.15 -537.90 -1.70 -10.52 16 14 C 0.06 0.75 11.00 127.77 1.41 2.15 16 15 N -0.52 -13.51 3.93 -901.60 -3.54 -17.05 16 16 C 0.03 0.76 8.46 127.69 1.08 1.84 16 17 C 0.06 1.69 4.89 85.56 0.42 2.11 16 18 C 0.44 19.14 7.47 87.66 0.66 19.79 16 19 O -0.61 -30.56 13.91 -3.07 -0.04 -30.60 16 20 N -0.58 -27.74 5.29 -306.98 -1.62 -29.36 16 21 C -0.33 -17.70 9.68 84.04 0.81 -16.89 16 22 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -48.23 13.05 21.66 0.28 -47.95 16 25 Si 0.99 41.54 29.55 68.60 2.03 43.56 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H 0.06 1.02 6.38 -2.39 -0.02 1.01 16 30 H 0.07 1.11 6.75 -2.39 -0.02 1.09 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.05 1.23 6.70 -2.39 -0.02 1.21 16 34 H 0.42 7.81 8.14 -92.71 -0.75 7.05 16 35 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.12 1.63 7.09 -2.39 -0.02 1.62 16 37 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.24 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.09 0.97 7.11 -2.39 -0.02 0.95 16 42 H 0.07 1.79 6.44 -2.39 -0.02 1.77 16 43 H 0.06 2.08 5.82 -2.39 -0.01 2.06 16 44 H 0.03 0.83 6.28 -2.39 -0.01 0.81 16 45 H 0.11 2.83 8.00 -2.39 -0.02 2.81 16 46 H 0.07 1.80 6.94 -2.39 -0.02 1.78 16 47 H 0.40 18.13 7.90 -92.71 -0.73 17.40 16 48 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -76.68 393.11 0.43 -76.25 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: -0.48 Total: 39.49 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: 10.30 Total: 28.27 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -11.33 Total: -138.45 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.09 Total: -49.12 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -76.68 0.43 -76.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755325443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.328 kcal (2) G-P(sol) polarization free energy of solvation -76.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds