Wall clock time and date at job start Tue Mar 31 2020 20:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46636 * 2 1 4 4 C 1.53002 * 109.46658 * 119.99649 * 2 1 3 5 5 N 1.46504 * 109.46932 * 65.67749 * 4 2 1 6 6 C 1.34781 * 119.99798 * 176.22794 * 5 4 2 7 7 O 1.21284 * 120.00009 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99676 * 180.27300 * 6 5 4 9 9 C 1.50701 * 109.47021 * 179.72281 * 8 6 5 10 10 C 1.34674 * 126.58626 * 85.02699 * 9 8 6 11 11 N 1.34131 * 108.01945 * 179.97438 * 10 9 8 12 12 C 1.30500 * 109.25544 * 0.02562 * 11 10 9 13 13 N 1.35045 * 108.70018 * 359.76259 * 12 11 10 14 14 C 1.46500 * 126.39783 * 180.26922 * 13 12 11 15 15 N 1.46894 * 109.47134 * 239.99687 * 2 1 3 16 16 C 1.46904 * 110.99977 * 184.09392 * 15 2 1 17 17 C 1.46909 * 110.99763 * 60.14457 * 15 2 1 18 18 C 1.50702 * 109.46795 * 189.99720 * 17 15 2 19 19 O 1.21296 * 120.00254 * 0.02562 * 18 17 15 20 20 N 1.34767 * 119.99788 * 180.02562 * 18 17 15 21 21 C 1.37107 * 120.00226 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99690 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00149 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00276 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99795 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47205 * 90.00298 * 25 23 21 27 27 H 1.48507 * 109.46971 * 210.00355 * 25 23 21 28 28 H 1.48503 * 109.47249 * 329.99901 * 25 23 21 29 29 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47431 * 300.00216 * 1 2 3 31 31 H 1.08998 * 109.47148 * 60.00003 * 1 2 3 32 32 H 1.08991 * 109.47416 * 305.67745 * 4 2 1 33 33 H 1.08999 * 109.46557 * 185.67321 * 4 2 1 34 34 H 0.96996 * 119.99775 * 356.23160 * 5 4 2 35 35 H 1.08996 * 109.47604 * 299.73060 * 8 6 5 36 36 H 1.09005 * 109.47498 * 59.72836 * 8 6 5 37 37 H 1.07996 * 125.98962 * 359.96663 * 10 9 8 38 38 H 1.07995 * 125.64520 * 180.02562 * 12 11 10 39 39 H 1.08999 * 109.46863 * 270.12319 * 14 13 12 40 40 H 1.09000 * 109.47014 * 30.11958 * 14 13 12 41 41 H 1.09003 * 109.47028 * 150.12430 * 14 13 12 42 42 H 1.08995 * 109.46490 * 66.54238 * 16 15 2 43 43 H 1.08994 * 109.46818 * 186.54113 * 16 15 2 44 44 H 1.08999 * 109.46695 * 306.54530 * 16 15 2 45 45 H 1.08993 * 109.46809 * 309.99316 * 17 15 2 46 46 H 1.08994 * 109.46740 * 70.00128 * 17 15 2 47 47 H 0.96999 * 120.00652 * 359.97438 * 20 18 17 48 48 H 0.97000 * 120.00555 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6663 -2.1362 1.1830 6 6 2.0771 -2.9875 2.1439 7 8 2.7557 -2.5819 3.0636 8 6 1.6979 -4.4442 2.0723 9 6 2.2837 -5.1743 3.2534 10 6 1.7416 -5.2788 4.4818 11 7 2.5729 -6.0076 5.2414 12 6 3.6096 -6.3582 4.5305 13 7 3.4664 -5.8627 3.2825 14 6 4.4029 -6.0292 2.1683 15 7 2.0197 -0.6925 -1.1993 16 6 3.4849 -0.7975 -1.1853 17 6 1.5515 -0.0244 -2.4211 18 6 1.8605 -0.8888 -3.6162 19 8 2.4157 -1.9566 -3.4651 20 7 1.5199 -0.4755 -4.8529 21 6 1.8006 -1.2621 -5.9402 22 1 2.2949 -2.2128 -5.8057 23 6 1.4490 -0.8361 -7.2152 24 7 0.8479 0.3210 -7.3790 25 14 1.8307 -1.9082 -8.6965 26 1 0.6875 -2.8198 -8.9556 27 1 2.0569 -1.0475 -9.8854 28 1 3.0514 -2.7095 -8.4262 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.5960 -0.2694 2.1363 33 1 3.1252 -0.6340 1.3016 34 1 1.1233 -2.4605 0.4475 35 1 0.6122 -4.5383 2.0889 36 1 2.0859 -4.8758 1.1496 37 1 0.8024 -4.8508 4.7995 38 1 4.4420 -6.9503 4.8811 39 1 5.1268 -5.2144 2.1773 40 1 4.9251 -6.9803 2.2717 41 1 3.8535 -6.0167 1.2269 42 1 3.7943 -1.4536 -0.3718 43 1 3.8288 -1.2085 -2.1344 44 1 3.9186 0.1918 -1.0392 45 1 0.4753 0.1364 -2.3575 46 1 2.0568 0.9355 -2.5266 47 1 1.0756 0.3783 -4.9738 48 1 0.6028 0.6186 -8.2691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755325444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:10 Heat of formation + Delta-G solvation = 2.632912 kcal Electronic energy + Delta-G solvation = -29239.946270 eV Core-core repulsion = 25138.587980 eV Total energy + Delta-G solvation = -4101.358290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22800 -39.84648 -38.78264 -37.27230 -34.39088 -34.19919 -33.80163 -32.44940 -31.31001 -31.02782 -28.66702 -27.47180 -27.13103 -25.76172 -24.95498 -23.71122 -21.59005 -21.28898 -20.04076 -19.83837 -19.14257 -17.91519 -17.41257 -17.18967 -16.60681 -15.84315 -15.77651 -15.53689 -15.23469 -14.83116 -14.75892 -14.47067 -13.99842 -13.95172 -13.75266 -13.72335 -13.40560 -13.21674 -13.16841 -13.04733 -12.81771 -12.67342 -12.28945 -12.12349 -11.95343 -11.67502 -11.53990 -11.38175 -11.27277 -10.98164 -10.65149 -10.45040 -10.27862 -10.09815 -9.99569 -9.67107 -9.53548 -9.04317 -8.53284 -8.45427 -8.05622 -7.96868 -6.47753 -3.88794 1.84856 2.57509 2.63591 3.02140 3.12614 3.21865 3.26724 3.31270 3.83026 3.88151 4.17879 4.35453 4.48188 4.58734 4.63569 4.76543 4.84226 4.86735 4.92187 5.05841 5.10561 5.16644 5.21919 5.23300 5.31704 5.44750 5.54105 5.61317 5.63510 5.65967 5.72918 5.83341 5.91698 5.94210 6.14211 6.19628 6.22834 6.40060 6.46211 6.61399 7.04103 7.15564 7.27019 7.49028 7.53422 7.95795 7.99889 8.21287 8.55035 9.11867 9.48120 9.99373 10.69844 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.002276 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.653916 B =12301.735331 C =13517.623262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 H 0.054 0.946 4 C 0.131 3.869 5 N -0.711 5.711 6 C 0.511 3.489 7 O -0.539 6.539 8 C -0.067 4.067 9 C -0.003 4.003 10 C -0.012 4.012 11 N -0.495 5.495 12 C 0.179 3.821 13 N -0.454 5.454 14 C 0.069 3.931 15 N -0.512 5.512 16 C 0.022 3.978 17 C 0.040 3.960 18 C 0.444 3.556 19 O -0.579 6.579 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.166 0.834 38 H 0.203 0.797 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.014 0.986 45 H 0.093 0.907 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 -5.026 16.720 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.046 4.046 3 H 0.072 0.928 4 C 0.007 3.993 5 N -0.365 5.365 6 C 0.297 3.703 7 O -0.416 6.416 8 C -0.108 4.108 9 C -0.118 4.118 10 C -0.160 4.160 11 N -0.213 5.213 12 C -0.103 4.103 13 N -0.137 5.137 14 C -0.074 4.074 15 N -0.237 5.237 16 C -0.125 4.125 17 C -0.091 4.091 18 C 0.229 3.771 19 O -0.463 6.463 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.195 1.195 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.248 0.752 35 H 0.135 0.865 36 H 0.120 0.880 37 H 0.183 0.817 38 H 0.220 0.780 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.032 0.968 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.765 -6.045 17.998 19.068 hybrid contribution 0.197 1.079 -2.240 2.494 sum 1.962 -4.966 15.758 16.638 Atomic orbital electron populations 1.21925 0.93800 1.02848 1.02052 1.21983 0.96356 0.95976 0.90253 0.92823 1.21349 1.00279 0.80967 0.96720 1.45848 1.54843 1.08768 1.27004 1.20433 0.80052 0.87768 0.82090 1.90727 1.38213 1.78636 1.34068 1.20026 1.02936 0.91616 0.96222 1.20423 0.89608 1.03401 0.98394 1.21951 1.01345 1.03067 0.89670 1.70251 1.03218 1.15515 1.32317 1.24852 1.00747 1.03767 0.80897 1.45213 1.17053 1.39712 1.11691 1.22078 0.93065 1.03573 0.88645 1.61639 1.11429 1.50711 0.99932 1.22526 0.86468 0.98927 1.04606 1.21954 1.01457 0.95526 0.90133 1.19710 0.85251 0.88328 0.83785 1.90483 1.46575 1.24032 1.85253 1.41876 1.52735 1.20598 1.04815 1.19674 1.36368 1.02790 0.84030 0.87947 1.25262 0.96907 0.96665 0.99098 1.69605 1.40752 1.19755 1.24109 0.85867 0.78990 0.79293 0.80191 1.20377 1.20934 1.19463 0.91648 0.92081 0.91777 0.91281 0.91471 0.75177 0.86548 0.88022 0.81677 0.78008 0.90323 0.89279 0.89486 0.92067 0.88767 0.96755 0.88914 0.93499 0.77518 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.87 37.16 0.33 -1.09 16 2 C 0.06 0.69 2.32 -67.71 -0.16 0.53 16 3 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.13 1.44 4.60 -4.04 -0.02 1.42 16 5 N -0.71 -7.64 5.11 -60.29 -0.31 -7.95 16 6 C 0.51 6.07 7.82 -10.99 -0.09 5.98 16 7 O -0.54 -8.57 16.03 5.55 0.09 -8.48 16 8 C -0.07 -0.62 6.04 -29.04 -0.18 -0.79 16 9 C 0.00 -0.04 5.45 -81.60 -0.44 -0.48 16 10 C -0.01 -0.15 11.79 -17.81 -0.21 -0.36 16 11 N -0.50 -6.70 11.25 -14.67 -0.16 -6.86 16 12 C 0.18 1.91 12.56 -90.37 -1.14 0.78 16 13 N -0.45 -4.63 3.15 -121.36 -0.38 -5.02 16 14 C 0.07 0.47 11.00 59.85 0.66 1.13 16 15 N -0.51 -7.27 3.83 -236.33 -0.91 -8.17 16 16 C 0.02 0.34 8.57 60.07 0.51 0.85 16 17 C 0.04 0.65 5.27 -4.97 -0.03 0.62 16 18 C 0.44 9.68 7.41 -10.99 -0.08 9.60 16 19 O -0.58 -14.36 13.98 5.54 0.08 -14.28 16 20 N -0.56 -13.53 5.29 -10.96 -0.06 -13.58 16 21 C -0.30 -7.98 9.68 -14.93 -0.14 -8.13 16 22 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -23.76 13.05 55.50 0.72 -23.04 16 25 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 H 0.06 0.63 7.15 -51.93 -0.37 0.26 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.63 6.20 -51.93 -0.32 0.31 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.82 6.83 -51.93 -0.35 0.47 16 34 H 0.41 4.23 7.29 -40.82 -0.30 3.93 16 35 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.80 7.09 -51.93 -0.37 0.43 16 37 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.20 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.54 7.11 -51.93 -0.37 0.17 16 42 H 0.06 0.86 6.74 -51.93 -0.35 0.51 16 43 H 0.09 1.74 5.78 -51.93 -0.30 1.44 16 44 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 45 H 0.09 1.33 5.83 -51.93 -0.30 1.03 16 46 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 47 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 48 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -34.67 394.03 -8.18 -42.85 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.09 Total: 12.70 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -1.07 Total: 10.54 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -1.09 Total: -64.62 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.17 Total: -22.76 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.67 -8.18 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755325444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.485 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds