Wall clock time and date at job start Tue Mar 31 2020 20:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46636 * 2 1 4 4 C 1.53002 * 109.46658 * 119.99649 * 2 1 3 5 5 N 1.46504 * 109.46932 * 65.67749 * 4 2 1 6 6 C 1.34781 * 119.99798 * 176.22794 * 5 4 2 7 7 O 1.21284 * 120.00009 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99676 * 180.27300 * 6 5 4 9 9 C 1.50701 * 109.47021 * 179.72281 * 8 6 5 10 10 C 1.34674 * 126.58626 * 85.02699 * 9 8 6 11 11 N 1.34131 * 108.01945 * 179.97438 * 10 9 8 12 12 C 1.30500 * 109.25544 * 0.02562 * 11 10 9 13 13 N 1.35045 * 108.70018 * 359.76259 * 12 11 10 14 14 C 1.46500 * 126.39783 * 180.26922 * 13 12 11 15 15 N 1.46894 * 109.47134 * 239.99687 * 2 1 3 16 16 C 1.46904 * 110.99977 * 184.09392 * 15 2 1 17 17 C 1.46909 * 110.99763 * 60.14457 * 15 2 1 18 18 C 1.50702 * 109.46795 * 189.99720 * 17 15 2 19 19 O 1.21296 * 120.00254 * 0.02562 * 18 17 15 20 20 N 1.34767 * 119.99788 * 180.02562 * 18 17 15 21 21 C 1.37107 * 120.00226 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99690 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00149 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00276 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99795 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47205 * 90.00298 * 25 23 21 27 27 H 1.48507 * 109.46971 * 210.00355 * 25 23 21 28 28 H 1.48503 * 109.47249 * 329.99901 * 25 23 21 29 29 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47431 * 300.00216 * 1 2 3 31 31 H 1.08998 * 109.47148 * 60.00003 * 1 2 3 32 32 H 1.08991 * 109.47416 * 305.67745 * 4 2 1 33 33 H 1.08999 * 109.46557 * 185.67321 * 4 2 1 34 34 H 0.96996 * 119.99775 * 356.23160 * 5 4 2 35 35 H 1.08996 * 109.47604 * 299.73060 * 8 6 5 36 36 H 1.09005 * 109.47498 * 59.72836 * 8 6 5 37 37 H 1.07996 * 125.98962 * 359.96663 * 10 9 8 38 38 H 1.07995 * 125.64520 * 180.02562 * 12 11 10 39 39 H 1.08999 * 109.46863 * 270.12319 * 14 13 12 40 40 H 1.09000 * 109.47014 * 30.11958 * 14 13 12 41 41 H 1.09003 * 109.47028 * 150.12430 * 14 13 12 42 42 H 1.08995 * 109.46490 * 66.54238 * 16 15 2 43 43 H 1.08994 * 109.46818 * 186.54113 * 16 15 2 44 44 H 1.08999 * 109.46695 * 306.54530 * 16 15 2 45 45 H 1.08993 * 109.46809 * 309.99316 * 17 15 2 46 46 H 1.08994 * 109.46740 * 70.00128 * 17 15 2 47 47 H 0.96999 * 120.00652 * 359.97438 * 20 18 17 48 48 H 0.97000 * 120.00555 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6663 -2.1362 1.1830 6 6 2.0771 -2.9875 2.1439 7 8 2.7557 -2.5819 3.0636 8 6 1.6979 -4.4442 2.0723 9 6 2.2837 -5.1743 3.2534 10 6 1.7416 -5.2788 4.4818 11 7 2.5729 -6.0076 5.2414 12 6 3.6096 -6.3582 4.5305 13 7 3.4664 -5.8627 3.2825 14 6 4.4029 -6.0292 2.1683 15 7 2.0197 -0.6925 -1.1993 16 6 3.4849 -0.7975 -1.1853 17 6 1.5515 -0.0244 -2.4211 18 6 1.8605 -0.8888 -3.6162 19 8 2.4157 -1.9566 -3.4651 20 7 1.5199 -0.4755 -4.8529 21 6 1.8006 -1.2621 -5.9402 22 1 2.2949 -2.2128 -5.8057 23 6 1.4490 -0.8361 -7.2152 24 7 0.8479 0.3210 -7.3790 25 14 1.8307 -1.9082 -8.6965 26 1 0.6875 -2.8198 -8.9556 27 1 2.0569 -1.0475 -9.8854 28 1 3.0514 -2.7095 -8.4262 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.5960 -0.2694 2.1363 33 1 3.1252 -0.6340 1.3016 34 1 1.1233 -2.4605 0.4475 35 1 0.6122 -4.5383 2.0889 36 1 2.0859 -4.8758 1.1496 37 1 0.8024 -4.8508 4.7995 38 1 4.4420 -6.9503 4.8811 39 1 5.1268 -5.2144 2.1773 40 1 4.9251 -6.9803 2.2717 41 1 3.8535 -6.0167 1.2269 42 1 3.7943 -1.4536 -0.3718 43 1 3.8288 -1.2085 -2.1344 44 1 3.9186 0.1918 -1.0392 45 1 0.4753 0.1364 -2.3575 46 1 2.0568 0.9355 -2.5266 47 1 1.0756 0.3783 -4.9738 48 1 0.6028 0.6186 -8.2691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755325444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:09 Heat of formation + Delta-G solvation = -22.451906 kcal Electronic energy + Delta-G solvation = -29241.034029 eV Core-core repulsion = 25138.587980 eV Total energy + Delta-G solvation = -4102.446049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.02886 -40.89202 -40.21565 -38.60748 -35.97549 -35.17728 -34.95394 -33.30413 -33.21680 -31.97118 -29.89106 -28.44084 -27.79694 -27.01238 -26.25582 -25.08572 -22.42159 -22.17278 -21.27349 -20.68137 -20.59980 -19.78963 -18.35002 -17.99582 -17.83903 -17.09620 -16.71031 -16.59563 -16.34395 -16.27207 -16.05099 -15.61974 -15.32412 -15.12035 -15.08430 -14.61136 -14.44905 -14.36917 -13.95406 -13.83944 -13.75375 -13.63560 -13.40474 -13.30524 -13.11246 -12.96400 -12.87069 -12.71854 -12.39714 -12.31467 -12.25551 -12.11866 -11.65099 -11.41578 -11.02377 -10.93458 -10.47594 -10.22458 -9.98123 -9.95666 -9.30491 -9.22288 -8.43594 -5.91364 1.03983 1.39297 1.43332 1.54993 1.67961 1.92633 2.10807 2.16242 2.29280 2.43843 2.77119 3.23988 3.45813 3.59327 3.74120 3.89967 3.97231 3.99923 4.06251 4.14996 4.22307 4.33295 4.35345 4.41106 4.46654 4.54645 4.58032 4.60213 4.63962 4.70573 4.73441 4.80889 4.84120 4.96434 5.04897 5.17656 5.38448 5.40966 5.44152 5.51092 5.78854 5.89204 6.08234 6.20218 6.31152 6.64057 6.64715 7.12706 7.17096 7.31175 7.61914 8.17256 8.73725 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.002276 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.653916 B =12301.735331 C =13517.623262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.134 3.866 5 N -0.704 5.704 6 C 0.513 3.487 7 O -0.583 6.583 8 C -0.061 4.061 9 C -0.011 4.011 10 C -0.040 4.040 11 N -0.536 5.536 12 C 0.177 3.823 13 N -0.457 5.457 14 C 0.064 3.936 15 N -0.520 5.520 16 C 0.032 3.968 17 C 0.053 3.947 18 C 0.444 3.556 19 O -0.611 6.611 20 N -0.577 5.577 21 C -0.327 4.327 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.989 3.011 26 H -0.271 1.271 27 H -0.274 1.274 28 H -0.273 1.273 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.416 0.584 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.170 0.830 38 H 0.237 0.763 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.027 0.973 45 H 0.117 0.883 46 H 0.063 0.937 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -4.970 16.604 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 H 0.084 0.916 4 C 0.009 3.991 5 N -0.356 5.356 6 C 0.300 3.700 7 O -0.463 6.463 8 C -0.102 4.102 9 C -0.126 4.126 10 C -0.188 4.188 11 N -0.255 5.255 12 C -0.105 4.105 13 N -0.139 5.139 14 C -0.077 4.077 15 N -0.245 5.245 16 C -0.116 4.116 17 C -0.078 4.078 18 C 0.232 3.768 19 O -0.496 6.496 20 N -0.215 5.215 21 C -0.456 4.456 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.199 1.199 28 H -0.198 1.198 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.253 0.747 35 H 0.160 0.840 36 H 0.136 0.864 37 H 0.187 0.813 38 H 0.253 0.747 39 H 0.092 0.908 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.228 0.772 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.361 -5.972 17.866 18.887 hybrid contribution 0.362 1.057 -2.119 2.395 sum 1.724 -4.915 15.748 16.587 Atomic orbital electron populations 1.21931 0.92352 1.03129 1.03009 1.22030 0.97348 0.96135 0.88336 0.91556 1.21328 0.99556 0.81120 0.97056 1.45827 1.54321 1.08734 1.26728 1.20816 0.79115 0.88728 0.81346 1.90711 1.40298 1.79526 1.35785 1.20089 1.04465 0.89513 0.96088 1.20703 0.90025 1.03335 0.98581 1.22215 1.02076 1.03969 0.90520 1.70201 1.04592 1.16931 1.33733 1.25541 1.00804 1.03217 0.80900 1.45461 1.17061 1.39042 1.12339 1.22315 0.92612 1.04957 0.87864 1.61595 1.10896 1.51574 1.00416 1.22338 0.87196 0.99512 1.02600 1.21821 1.03119 0.94598 0.88237 1.20738 0.83176 0.88298 0.84599 1.90466 1.47419 1.25806 1.85944 1.41952 1.53690 1.20663 1.05171 1.19619 1.37595 1.02788 0.85646 0.90228 1.25985 0.96496 0.97832 1.01090 1.69667 1.41122 1.20641 1.24861 0.84976 0.78657 0.77843 0.77174 1.19699 1.19931 1.19790 0.91740 0.90115 0.91826 0.90382 0.92800 0.74669 0.84022 0.86421 0.81258 0.74712 0.90814 0.86400 0.88818 0.91474 0.92564 0.95449 0.86530 0.91947 0.77153 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.87 71.98 0.64 -1.70 16 2 C 0.07 1.34 2.32 44.92 0.10 1.44 16 3 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 4 C 0.13 2.68 4.60 86.38 0.40 3.07 16 5 N -0.70 -13.97 5.11 -463.06 -2.37 -16.33 16 6 C 0.51 11.63 7.82 87.65 0.69 12.32 16 7 O -0.58 -18.35 16.03 -3.04 -0.05 -18.40 16 8 C -0.06 -1.03 6.04 29.10 0.18 -0.86 16 9 C -0.01 -0.23 5.45 40.95 0.22 -0.01 16 10 C -0.04 -1.02 11.79 83.52 0.98 -0.04 16 11 N -0.54 -14.55 11.25 -200.31 -2.25 -16.80 16 12 C 0.18 3.63 12.56 180.26 2.26 5.90 16 13 N -0.46 -8.84 3.15 -537.89 -1.70 -10.53 16 14 C 0.06 0.76 11.00 127.77 1.41 2.16 16 15 N -0.52 -13.81 3.83 -901.61 -3.45 -17.27 16 16 C 0.03 0.92 8.57 127.69 1.09 2.01 16 17 C 0.05 1.61 5.27 85.56 0.45 2.06 16 18 C 0.44 19.31 7.41 87.66 0.65 19.96 16 19 O -0.61 -30.65 13.98 -3.08 -0.04 -30.70 16 20 N -0.58 -27.87 5.29 -306.98 -1.62 -29.49 16 21 C -0.33 -17.71 9.68 84.04 0.81 -16.89 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.57 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.92 -48.29 13.05 21.66 0.28 -48.01 16 25 Si 0.99 41.59 29.55 68.60 2.03 43.61 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 29 H 0.06 1.06 7.15 -2.39 -0.02 1.04 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.04 6.20 -2.39 -0.01 1.03 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.25 6.83 -2.39 -0.02 1.23 16 34 H 0.42 7.72 7.29 -92.71 -0.68 7.04 16 35 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.12 1.62 7.09 -2.38 -0.02 1.60 16 37 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.24 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.99 7.11 -2.39 -0.02 0.97 16 42 H 0.07 1.84 6.74 -2.39 -0.02 1.82 16 43 H 0.06 2.09 5.78 -2.39 -0.01 2.07 16 44 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 45 H 0.12 3.02 5.83 -2.39 -0.01 3.01 16 46 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 47 H 0.39 18.23 7.90 -92.71 -0.73 17.49 16 48 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -76.60 394.03 0.77 -75.82 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: -0.41 Total: 38.96 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: 10.35 Total: 29.14 kcal Atomic # 7 Polarization: -127.33 SS G_CDS: -11.11 Total: -138.44 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.09 Total: -49.10 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -76.60 0.77 -75.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755325444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.369 kcal (2) G-P(sol) polarization free energy of solvation -76.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds