Wall clock time and date at job start Tue Mar 31 2020 20:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46974 * 2 1 4 4 C 1.52998 * 109.47665 * 239.99665 * 2 1 3 5 5 N 1.46500 * 109.47530 * 184.99900 * 4 2 1 6 6 C 1.34777 * 120.00023 * 180.02562 * 5 4 2 7 7 O 1.21598 * 119.99837 * 359.97438 * 6 5 4 8 8 C 1.47517 * 119.99996 * 180.02562 * 6 5 4 9 9 C 1.36600 * 125.77153 * 179.71693 * 8 6 5 10 10 N 1.34817 * 106.83948 * 179.89074 * 9 8 6 11 11 C 1.46493 * 126.59413 * 180.12549 * 10 9 8 12 12 C 1.53183 * 109.54080 * 35.07361 * 11 10 9 13 13 C 1.53108 * 109.15467 * 183.23799 * 12 11 10 14 14 O 1.42903 * 109.48597 * 57.47536 * 13 12 11 15 15 C 1.42901 * 114.09938 * 298.88397 * 14 13 12 16 16 C 1.53099 * 109.40959 * 61.16040 * 15 14 13 17 17 N 1.40208 * 106.80774 * 0.36064 * 10 9 8 18 18 N 1.28757 * 108.36960 * 359.76676 * 17 10 9 19 19 N 1.46503 * 109.47378 * 119.99434 * 2 1 3 20 20 C 1.46504 * 119.99851 * 60.00177 * 19 2 1 21 21 C 1.36932 * 120.00506 * 240.00430 * 19 2 1 22 22 H 1.08005 * 119.99684 * 23.10961 * 21 19 2 23 23 C 1.38806 * 120.00164 * 203.11487 * 21 19 2 24 24 N 1.31618 * 120.00310 * 11.69767 * 23 21 19 25 25 Si 1.86802 * 120.00027 * 191.69503 * 23 21 19 26 26 H 1.48502 * 109.47187 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47245 * 120.00051 * 25 23 21 28 28 H 1.48502 * 109.47444 * 240.00149 * 25 23 21 29 29 H 1.09001 * 109.46729 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46749 * 60.00455 * 1 2 3 31 31 H 1.08994 * 109.46920 * 300.00185 * 1 2 3 32 32 H 1.09002 * 109.47184 * 305.00245 * 4 2 1 33 33 H 1.09003 * 109.46640 * 64.99645 * 4 2 1 34 34 H 0.96997 * 119.99619 * 0.02562 * 5 4 2 35 35 H 1.08001 * 126.57790 * 0.03581 * 9 8 6 36 36 H 1.08999 * 109.54414 * 155.24619 * 11 10 9 37 37 H 1.09004 * 109.52267 * 303.05351 * 12 11 10 38 38 H 1.08998 * 109.52326 * 63.25050 * 12 11 10 39 39 H 1.08994 * 109.40797 * 297.48964 * 13 12 11 40 40 H 1.09004 * 109.47964 * 177.50054 * 13 12 11 41 41 H 1.08996 * 109.48231 * 301.17715 * 15 14 13 42 42 H 1.08994 * 109.47804 * 181.14088 * 15 14 13 43 43 H 1.09004 * 109.51863 * 182.48618 * 16 15 14 44 44 H 1.09002 * 109.57621 * 62.32934 * 16 15 14 45 45 H 1.09001 * 109.47261 * 93.93178 * 20 19 2 46 46 H 1.09000 * 109.47344 * 213.93210 * 20 19 2 47 47 H 1.09007 * 109.46943 * 333.93628 * 20 19 2 48 48 H 0.96998 * 120.00579 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5002 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1910 7 8 3.5686 -1.8845 -3.1422 8 6 5.6434 -1.5346 -2.1316 9 6 6.4401 -2.1224 -3.0727 10 7 7.7108 -2.0029 -2.6385 11 6 8.9154 -2.4835 -3.3197 12 6 8.7376 -2.3434 -4.8347 13 6 9.9669 -2.9223 -5.5404 14 8 10.1403 -4.2869 -5.1533 15 6 10.3589 -4.4730 -3.7534 16 6 9.1444 -3.9585 -2.9760 17 7 7.6573 -1.3349 -1.4069 18 7 6.4249 -1.0746 -1.1398 19 7 2.0184 -0.6905 1.1962 20 6 1.6645 -2.0931 1.4282 21 6 2.8056 -0.0250 2.0976 22 1 2.7707 1.0531 2.1524 23 6 3.6485 -0.7359 2.9407 24 7 3.8673 -2.0159 2.7262 25 14 4.4724 0.1241 4.3799 26 1 4.0651 1.5520 4.4023 27 1 4.0595 -0.5279 5.6485 28 1 5.9473 0.0319 4.2332 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 0.5138 0.8899 32 1 1.6055 -1.7199 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 3.9824 -0.4627 -0.4315 35 1 6.1147 -2.5907 -3.9899 36 1 9.7753 -1.8963 -2.9976 37 1 7.8480 -2.8892 -5.1491 38 1 8.6302 -1.2900 -5.0930 39 1 10.8500 -2.3493 -5.2580 40 1 9.8266 -2.8657 -6.6199 41 1 11.2471 -3.9203 -3.4475 42 1 10.5009 -5.5335 -3.5456 43 1 9.3276 -4.0590 -1.9062 44 1 8.2628 -4.5377 -3.2506 45 1 2.4508 -2.7364 1.0331 46 1 1.5555 -2.2681 2.4985 47 1 0.7239 -2.3184 0.9254 48 1 4.4567 -2.5126 3.3152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755325555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:18 Heat of formation + Delta-G solvation = 37.729186 kcal Electronic energy + Delta-G solvation = -29892.470981 eV Core-core repulsion = 25792.634579 eV Total energy + Delta-G solvation = -4099.836401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.13119 -39.82349 -38.80306 -36.59621 -35.64668 -33.59497 -32.04982 -31.82112 -31.58023 -30.63212 -29.19979 -26.32302 -25.94051 -25.42512 -24.28056 -23.24510 -22.62697 -22.41697 -20.46639 -19.96286 -19.28376 -17.99390 -16.84933 -16.72702 -16.63742 -15.94414 -15.65082 -15.53214 -15.26543 -15.13234 -14.78841 -14.50857 -14.15171 -14.11437 -13.66904 -13.58173 -13.01014 -12.73952 -12.60940 -12.27306 -12.11464 -12.05511 -11.98421 -11.95315 -11.63324 -11.53407 -11.25782 -11.01874 -10.85271 -10.73249 -10.62678 -10.34011 -10.27490 -10.20537 -10.19862 -9.78374 -9.70856 -9.62401 -9.11551 -8.50025 -8.29209 -6.71384 -5.66426 -3.13782 1.25530 1.97299 2.06215 3.31097 3.43311 3.50642 3.52455 3.66294 3.78408 3.92361 4.05042 4.27573 4.34007 4.38693 4.54397 4.58447 4.74268 4.80969 4.97206 4.99985 5.12602 5.13584 5.18753 5.31032 5.37463 5.46622 5.47694 5.51453 5.64791 5.67471 5.99155 6.05412 6.14558 6.20243 6.39765 6.41563 6.44605 6.60485 6.74925 6.86671 6.95900 7.16423 7.45866 7.81037 7.87689 8.06699 8.36111 8.44488 8.80665 9.28993 9.91764 10.41096 11.37225 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.002989 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.552666 B = 9364.180819 C =10739.354975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.107 3.893 5 N -0.681 5.681 6 C 0.597 3.403 7 O -0.564 6.564 8 C -0.088 4.088 9 C 0.084 3.916 10 N -0.364 5.364 11 C 0.153 3.847 12 C -0.171 4.171 13 C 0.067 3.933 14 O -0.379 6.379 15 C 0.066 3.934 16 C -0.170 4.170 17 N -0.069 5.069 18 N -0.183 5.183 19 N -0.593 5.593 20 C 0.164 3.836 21 C -0.262 4.262 22 H 0.068 0.932 23 C 0.010 3.990 24 N -0.898 5.898 25 Si 0.900 3.100 26 H -0.279 1.279 27 H -0.292 1.292 28 H -0.290 1.290 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.423 0.577 35 H 0.198 0.802 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.028 0.972 46 H 0.042 0.958 47 H -0.002 1.002 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.021 -2.284 -16.467 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.019 4.019 5 N -0.330 5.330 6 C 0.380 3.620 7 O -0.444 6.444 8 C -0.227 4.227 9 C -0.072 4.072 10 N -0.149 5.149 11 C 0.051 3.949 12 C -0.210 4.210 13 C -0.010 4.010 14 O -0.297 6.297 15 C -0.011 4.011 16 C -0.209 4.209 17 N -0.049 5.049 18 N -0.057 5.057 19 N -0.316 5.316 20 C 0.019 3.981 21 C -0.392 4.392 22 H 0.085 0.915 23 C -0.189 4.189 24 N -0.542 5.542 25 Si 0.731 3.269 26 H -0.204 1.204 27 H -0.219 1.219 28 H -0.216 1.216 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.262 0.738 35 H 0.215 0.785 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.046 0.954 46 H 0.061 0.939 47 H 0.016 0.984 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.505 -2.301 -15.933 19.787 hybrid contribution 0.264 0.209 0.665 0.746 sum 11.769 -2.092 -15.268 19.391 Atomic orbital electron populations 1.22164 0.97473 1.01427 1.00623 1.20659 0.92597 0.95988 0.85951 0.91298 1.22016 0.79563 1.01160 0.99194 1.45694 1.08165 1.56476 1.22691 1.16755 0.83703 0.78547 0.83009 1.90732 1.68680 1.50494 1.34481 1.21601 0.96388 1.10020 0.94704 1.23165 0.83798 0.99357 1.00879 1.50636 1.06262 1.40676 1.17303 1.21540 0.85314 0.96120 0.91924 1.22714 1.01752 1.03842 0.92671 1.22559 0.95471 0.82776 1.00208 1.87995 1.92498 1.25574 1.23661 1.22591 0.95406 1.02497 0.80599 1.22718 1.01329 0.94057 1.02800 1.82045 1.13179 1.13995 0.95639 1.74800 0.97243 1.13209 1.20440 1.43937 1.57886 1.09651 1.20154 1.20747 0.93811 0.84562 0.98943 1.19210 1.16320 0.91095 1.12555 0.91462 1.24981 0.97599 0.96081 1.00254 1.70077 1.38684 1.07390 1.38042 0.86252 0.79214 0.78853 0.82596 1.20421 1.21887 1.21648 0.92957 0.93587 0.92422 0.92196 0.92661 0.73792 0.78490 0.86899 0.89383 0.89195 0.92390 0.87634 0.92344 0.87701 0.89163 0.89728 0.95405 0.93938 0.98399 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.18 37.16 0.34 -2.31 16 2 C 0.16 3.10 2.87 -67.93 -0.19 2.91 16 3 H 0.07 1.36 7.87 -51.93 -0.41 0.95 16 4 C 0.11 2.06 4.97 -4.04 -0.02 2.04 16 5 N -0.68 -14.18 5.39 -61.35 -0.33 -14.51 16 6 C 0.60 12.02 7.82 -12.48 -0.10 11.92 16 7 O -0.56 -11.90 16.86 5.28 0.09 -11.81 16 8 C -0.09 -1.60 6.99 -83.55 -0.58 -2.19 16 9 C 0.08 1.18 10.40 -16.83 -0.18 1.00 16 10 N -0.36 -4.71 3.55 -54.39 -0.19 -4.90 16 11 C 0.15 1.30 3.31 -67.75 -0.22 1.08 16 12 C -0.17 -1.08 5.15 -26.58 -0.14 -1.22 16 13 C 0.07 0.36 6.84 37.21 0.25 0.61 16 14 O -0.38 -2.84 10.77 -35.23 -0.38 -3.22 16 15 C 0.07 0.41 6.84 37.21 0.25 0.66 16 16 C -0.17 -1.33 5.75 -26.59 -0.15 -1.49 16 17 N -0.07 -1.20 13.78 60.35 0.83 -0.36 16 18 N -0.18 -3.64 12.04 32.84 0.40 -3.25 16 19 N -0.59 -14.22 2.29 -173.48 -0.40 -14.62 16 20 C 0.16 4.02 8.11 59.85 0.49 4.50 16 21 C -0.26 -6.94 9.32 -15.06 -0.14 -7.08 16 22 H 0.07 1.76 7.82 -52.48 -0.41 1.35 16 23 C 0.01 0.28 5.12 -17.43 -0.09 0.19 16 24 N -0.90 -25.79 10.65 55.49 0.59 -25.20 16 25 Si 0.90 21.97 29.57 -169.99 -5.03 16.94 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H 0.05 0.88 6.66 -51.93 -0.35 0.54 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.22 7.84 -51.93 -0.41 0.81 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.42 9.69 7.58 -40.82 -0.31 9.38 16 35 H 0.20 2.14 7.27 -52.49 -0.38 1.76 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.58 7.08 -51.93 -0.37 0.21 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.75 7.41 -51.93 -0.38 0.37 16 46 H 0.04 1.12 7.23 -51.93 -0.38 0.75 16 47 H 0.00 -0.05 6.43 -51.92 -0.33 -0.39 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -32.92 389.94 -6.53 -39.45 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.51 Total: 4.97 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.48 Total: 10.63 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: 0.90 Total: -62.84 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.29 Total: -15.03 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.92 -6.53 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755325555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.183 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds