Wall clock time and date at job start Tue Mar 31 2020 20:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46974 * 2 1 4 4 C 1.52998 * 109.47665 * 239.99665 * 2 1 3 5 5 N 1.46500 * 109.47530 * 184.99900 * 4 2 1 6 6 C 1.34777 * 120.00023 * 180.02562 * 5 4 2 7 7 O 1.21598 * 119.99837 * 359.97438 * 6 5 4 8 8 C 1.47517 * 119.99996 * 180.02562 * 6 5 4 9 9 C 1.36600 * 125.77153 * 179.71693 * 8 6 5 10 10 N 1.34817 * 106.83948 * 179.89074 * 9 8 6 11 11 C 1.46493 * 126.59413 * 180.12549 * 10 9 8 12 12 C 1.53183 * 109.54080 * 35.07361 * 11 10 9 13 13 C 1.53108 * 109.15467 * 183.23799 * 12 11 10 14 14 O 1.42903 * 109.48597 * 57.47536 * 13 12 11 15 15 C 1.42901 * 114.09938 * 298.88397 * 14 13 12 16 16 C 1.53099 * 109.40959 * 61.16040 * 15 14 13 17 17 N 1.40208 * 106.80774 * 0.36064 * 10 9 8 18 18 N 1.28757 * 108.36960 * 359.76676 * 17 10 9 19 19 N 1.46503 * 109.47378 * 119.99434 * 2 1 3 20 20 C 1.46504 * 119.99851 * 60.00177 * 19 2 1 21 21 C 1.36932 * 120.00506 * 240.00430 * 19 2 1 22 22 H 1.08005 * 119.99684 * 23.10961 * 21 19 2 23 23 C 1.38806 * 120.00164 * 203.11487 * 21 19 2 24 24 N 1.31618 * 120.00310 * 11.69767 * 23 21 19 25 25 Si 1.86802 * 120.00027 * 191.69503 * 23 21 19 26 26 H 1.48502 * 109.47187 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47245 * 120.00051 * 25 23 21 28 28 H 1.48502 * 109.47444 * 240.00149 * 25 23 21 29 29 H 1.09001 * 109.46729 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46749 * 60.00455 * 1 2 3 31 31 H 1.08994 * 109.46920 * 300.00185 * 1 2 3 32 32 H 1.09002 * 109.47184 * 305.00245 * 4 2 1 33 33 H 1.09003 * 109.46640 * 64.99645 * 4 2 1 34 34 H 0.96997 * 119.99619 * 0.02562 * 5 4 2 35 35 H 1.08001 * 126.57790 * 0.03581 * 9 8 6 36 36 H 1.08999 * 109.54414 * 155.24619 * 11 10 9 37 37 H 1.09004 * 109.52267 * 303.05351 * 12 11 10 38 38 H 1.08998 * 109.52326 * 63.25050 * 12 11 10 39 39 H 1.08994 * 109.40797 * 297.48964 * 13 12 11 40 40 H 1.09004 * 109.47964 * 177.50054 * 13 12 11 41 41 H 1.08996 * 109.48231 * 301.17715 * 15 14 13 42 42 H 1.08994 * 109.47804 * 181.14088 * 15 14 13 43 43 H 1.09004 * 109.51863 * 182.48618 * 16 15 14 44 44 H 1.09002 * 109.57621 * 62.32934 * 16 15 14 45 45 H 1.09001 * 109.47261 * 93.93178 * 20 19 2 46 46 H 1.09000 * 109.47344 * 213.93210 * 20 19 2 47 47 H 1.09007 * 109.46943 * 333.93628 * 20 19 2 48 48 H 0.96998 * 120.00579 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5002 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1910 7 8 3.5686 -1.8845 -3.1422 8 6 5.6434 -1.5346 -2.1316 9 6 6.4401 -2.1224 -3.0727 10 7 7.7108 -2.0029 -2.6385 11 6 8.9154 -2.4835 -3.3197 12 6 8.7376 -2.3434 -4.8347 13 6 9.9669 -2.9223 -5.5404 14 8 10.1403 -4.2869 -5.1533 15 6 10.3589 -4.4730 -3.7534 16 6 9.1444 -3.9585 -2.9760 17 7 7.6573 -1.3349 -1.4069 18 7 6.4249 -1.0746 -1.1398 19 7 2.0184 -0.6905 1.1962 20 6 1.6645 -2.0931 1.4282 21 6 2.8056 -0.0250 2.0976 22 1 2.7707 1.0531 2.1524 23 6 3.6485 -0.7359 2.9407 24 7 3.8673 -2.0159 2.7262 25 14 4.4724 0.1241 4.3799 26 1 4.0651 1.5520 4.4023 27 1 4.0595 -0.5279 5.6485 28 1 5.9473 0.0319 4.2332 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 0.5138 0.8899 32 1 1.6055 -1.7199 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 3.9824 -0.4627 -0.4315 35 1 6.1147 -2.5907 -3.9899 36 1 9.7753 -1.8963 -2.9976 37 1 7.8480 -2.8892 -5.1491 38 1 8.6302 -1.2900 -5.0930 39 1 10.8500 -2.3493 -5.2580 40 1 9.8266 -2.8657 -6.6199 41 1 11.2471 -3.9203 -3.4475 42 1 10.5009 -5.5335 -3.5456 43 1 9.3276 -4.0590 -1.9062 44 1 8.2628 -4.5377 -3.2506 45 1 2.4508 -2.7364 1.0331 46 1 1.5555 -2.2681 2.4985 47 1 0.7239 -2.3184 0.9254 48 1 4.4567 -2.5126 3.3152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755325555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:17 Heat of formation + Delta-G solvation = 14.148129 kcal Electronic energy + Delta-G solvation = -29893.493532 eV Core-core repulsion = 25792.634579 eV Total energy + Delta-G solvation = -4100.858953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.34583 -40.58098 -40.20171 -38.33546 -36.50002 -35.34976 -33.77067 -32.67901 -32.26945 -31.94016 -30.99253 -27.97700 -27.55633 -26.41226 -25.05753 -24.78642 -24.08171 -23.41126 -21.37183 -21.20371 -20.95654 -19.19869 -18.80361 -17.66377 -17.33733 -17.11288 -17.05264 -16.81539 -16.58007 -16.07807 -15.88700 -15.75151 -15.53329 -15.16137 -14.93055 -14.86929 -14.57632 -14.36465 -13.80654 -13.58530 -13.50133 -13.36361 -13.18035 -12.84294 -12.76632 -12.61155 -12.59593 -12.47319 -12.35440 -12.27103 -12.24201 -12.04530 -11.72219 -11.50797 -11.44564 -11.25936 -11.19016 -10.75105 -10.58675 -10.42547 -9.87383 -8.72118 -7.75203 -5.22783 0.08792 0.63184 0.97797 1.47164 1.50117 1.58233 2.21482 2.35600 2.54999 2.87053 3.12559 3.20203 3.40152 3.42325 3.64581 3.71332 3.73954 3.78846 3.88506 4.09415 4.10143 4.13808 4.21365 4.42217 4.46078 4.53260 4.59146 4.64421 4.67870 4.75279 4.75593 4.86254 4.87858 4.88387 4.94517 5.04144 5.12553 5.30865 5.33365 5.41070 5.47932 5.62383 5.72479 5.78353 6.16092 6.38782 6.55839 6.92192 7.19877 7.22482 7.93871 8.38327 9.26601 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.002989 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.552666 B = 9364.180819 C =10739.354975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.154 3.846 3 H 0.070 0.930 4 C 0.112 3.888 5 N -0.691 5.691 6 C 0.596 3.404 7 O -0.577 6.577 8 C -0.120 4.120 9 C 0.109 3.891 10 N -0.343 5.343 11 C 0.142 3.858 12 C -0.165 4.165 13 C 0.067 3.933 14 O -0.396 6.396 15 C 0.071 3.929 16 C -0.166 4.166 17 N -0.091 5.091 18 N -0.225 5.225 19 N -0.602 5.602 20 C 0.183 3.817 21 C -0.257 4.257 22 H 0.071 0.929 23 C -0.041 4.041 24 N -0.926 5.926 25 Si 0.956 3.044 26 H -0.266 1.266 27 H -0.296 1.296 28 H -0.300 1.300 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.412 0.588 35 H 0.232 0.768 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.075 0.925 45 H -0.005 1.005 46 H 0.014 0.986 47 H 0.027 0.973 48 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.486 -1.680 -18.542 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.047 3.953 3 H 0.089 0.911 4 C -0.014 4.014 5 N -0.339 5.339 6 C 0.380 3.620 7 O -0.459 6.459 8 C -0.260 4.260 9 C -0.049 4.049 10 N -0.128 5.128 11 C 0.042 3.958 12 C -0.204 4.204 13 C -0.010 4.010 14 O -0.315 6.315 15 C -0.007 4.007 16 C -0.205 4.205 17 N -0.071 5.071 18 N -0.098 5.098 19 N -0.326 5.326 20 C 0.038 3.962 21 C -0.387 4.387 22 H 0.089 0.911 23 C -0.237 4.237 24 N -0.573 5.573 25 Si 0.786 3.214 26 H -0.190 1.190 27 H -0.223 1.223 28 H -0.228 1.228 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.249 0.751 35 H 0.248 0.752 36 H 0.144 0.856 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.132 0.868 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.013 0.987 46 H 0.033 0.967 47 H 0.045 0.955 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.972 -1.666 -18.032 21.708 hybrid contribution 0.167 0.008 1.179 1.191 sum 12.139 -1.658 -16.853 20.836 Atomic orbital electron populations 1.22040 0.94592 1.01806 1.02143 1.20885 0.94554 0.95488 0.84417 0.91141 1.22000 0.78922 1.00697 0.99735 1.45810 1.08713 1.56830 1.22497 1.16988 0.84587 0.77878 0.82518 1.90702 1.69286 1.51088 1.34784 1.21589 0.95826 1.12440 0.96145 1.23567 0.83438 0.97258 1.00639 1.50960 1.07336 1.38603 1.15852 1.22081 0.83915 0.96595 0.93245 1.22737 1.02522 1.04580 0.90513 1.22724 0.95388 0.81925 1.00983 1.87981 1.92519 1.26906 1.24050 1.22638 0.94832 1.03268 0.79929 1.22698 1.01987 0.93342 1.02501 1.81920 1.12318 1.15180 0.97637 1.74766 0.98247 1.14853 1.21913 1.44075 1.57664 1.09390 1.21440 1.20402 0.93973 0.84662 0.97159 1.19477 1.15488 0.91352 1.12413 0.91093 1.25602 0.98824 0.96657 1.02616 1.70243 1.39696 1.08582 1.38756 0.85369 0.77542 0.78600 0.79908 1.19004 1.22327 1.22758 0.93106 0.90197 0.92782 0.93343 0.90330 0.75135 0.75188 0.85634 0.89378 0.88311 0.90856 0.86008 0.90733 0.86845 0.90240 0.90669 0.98654 0.96674 0.95502 0.94896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.18 71.98 0.66 -3.91 16 2 C 0.15 5.90 2.87 44.99 0.13 6.03 16 3 H 0.07 2.69 7.87 -2.39 -0.02 2.67 16 4 C 0.11 4.23 4.97 86.38 0.43 4.66 16 5 N -0.69 -29.10 5.39 -466.28 -2.51 -31.61 16 6 C 0.60 24.16 7.82 86.69 0.68 24.84 16 7 O -0.58 -24.06 16.86 -4.02 -0.07 -24.13 16 8 C -0.12 -4.42 6.99 40.82 0.29 -4.14 16 9 C 0.11 2.94 10.40 83.85 0.87 3.81 16 10 N -0.34 -8.57 3.55 -325.98 -1.16 -9.72 16 11 C 0.14 2.15 3.31 45.11 0.15 2.30 16 12 C -0.16 -1.64 5.15 30.69 0.16 -1.48 16 13 C 0.07 0.50 6.84 72.02 0.49 1.00 16 14 O -0.40 -4.93 10.77 -148.98 -1.60 -6.53 16 15 C 0.07 0.71 6.84 72.02 0.49 1.21 16 16 C -0.17 -2.38 5.75 30.68 0.18 -2.21 16 17 N -0.09 -3.19 13.78 37.02 0.51 -2.68 16 18 N -0.23 -9.20 12.04 -50.00 -0.60 -9.80 16 19 N -0.60 -28.93 2.29 -702.76 -1.61 -30.53 16 20 C 0.18 9.12 8.11 127.77 1.04 10.16 16 21 C -0.26 -13.68 9.32 84.03 0.78 -12.90 16 22 H 0.07 3.68 7.82 -2.91 -0.02 3.66 16 23 C -0.04 -2.29 5.12 84.86 0.43 -1.85 16 24 N -0.93 -55.04 10.65 21.65 0.23 -54.81 16 25 Si 0.96 46.02 29.57 68.60 2.03 48.04 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 29 H 0.05 1.60 6.66 -2.39 -0.02 1.58 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.94 7.84 -2.39 -0.02 1.92 16 33 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.41 19.41 7.58 -92.71 -0.70 18.70 16 35 H 0.23 4.47 7.27 -2.91 -0.02 4.45 16 36 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 0.90 7.08 -2.38 -0.02 0.89 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.00 -0.27 7.41 -2.39 -0.02 -0.29 16 46 H 0.01 0.80 7.23 -2.39 -0.02 0.78 16 47 H 0.03 1.15 6.43 -2.38 -0.02 1.14 16 48 H 0.24 14.28 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -73.13 389.94 2.27 -70.86 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.27 Total: 23.39 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 6.78 Total: 27.52 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -5.13 Total: -139.16 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.67 Total: -30.66 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.13 2.27 -70.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755325555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.012 kcal (2) G-P(sol) polarization free energy of solvation -73.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds