Wall clock time and date at job start Tue Mar 31 2020 20:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46950 * 2 1 4 4 C 1.53001 * 109.46692 * 120.00145 * 2 1 3 5 5 N 1.46499 * 109.47010 * 175.00338 * 4 2 1 6 6 C 1.34779 * 120.00210 * 180.02562 * 5 4 2 7 7 O 1.21594 * 119.99672 * 359.71880 * 6 5 4 8 8 C 1.47521 * 120.00022 * 179.97438 * 6 5 4 9 9 C 1.36600 * 125.77075 * 179.43626 * 8 6 5 10 10 N 1.34814 * 106.83989 * 179.83823 * 9 8 6 11 11 C 1.46493 * 126.59528 * 180.14932 * 10 9 8 12 12 C 1.53174 * 109.54350 * 35.12030 * 11 10 9 13 13 C 1.53107 * 109.16086 * 183.24019 * 12 11 10 14 14 O 1.42902 * 109.48646 * 57.47301 * 13 12 11 15 15 C 1.42909 * 114.09844 * 298.88976 * 14 13 12 16 16 C 1.53098 * 109.41251 * 61.15373 * 15 14 13 17 17 N 1.40217 * 106.80836 * 0.41839 * 10 9 8 18 18 N 1.28754 * 108.36720 * 359.73284 * 17 10 9 19 19 N 1.46500 * 109.47079 * 239.99616 * 2 1 3 20 20 C 1.46499 * 120.00493 * 300.00010 * 19 2 1 21 21 C 1.36938 * 119.99682 * 120.00472 * 19 2 1 22 22 H 1.08005 * 120.00177 * 23.09383 * 21 19 2 23 23 C 1.38818 * 119.99860 * 203.09967 * 21 19 2 24 24 N 1.31620 * 119.99779 * 12.99929 * 23 21 19 25 25 Si 1.86797 * 119.99700 * 192.99911 * 23 21 19 26 26 H 1.48500 * 109.47464 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46885 * 119.99659 * 25 23 21 28 28 H 1.48497 * 109.46910 * 239.99512 * 25 23 21 29 29 H 1.09004 * 109.47285 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47241 * 299.99930 * 1 2 3 31 31 H 1.09006 * 109.46967 * 60.00420 * 1 2 3 32 32 H 1.08999 * 109.47596 * 54.99925 * 4 2 1 33 33 H 1.09003 * 109.46874 * 294.99813 * 4 2 1 34 34 H 0.96999 * 119.99863 * 359.97438 * 5 4 2 35 35 H 1.07998 * 126.57999 * 359.97218 * 9 8 6 36 36 H 1.09003 * 109.54639 * 155.29451 * 11 10 9 37 37 H 1.09002 * 109.52277 * 303.05623 * 12 11 10 38 38 H 1.09002 * 109.52458 * 63.24612 * 12 11 10 39 39 H 1.09003 * 109.40465 * 297.49519 * 13 12 11 40 40 H 1.08999 * 109.48748 * 177.49990 * 13 12 11 41 41 H 1.08998 * 109.47910 * 301.18164 * 15 14 13 42 42 H 1.08993 * 109.48150 * 181.13747 * 15 14 13 43 43 H 1.09000 * 109.52012 * 182.48177 * 16 15 14 44 44 H 1.09003 * 109.56713 * 62.33246 * 16 15 14 45 45 H 1.09002 * 109.47112 * 95.12567 * 20 19 2 46 46 H 1.09000 * 109.47502 * 215.13005 * 20 19 2 47 47 H 1.09000 * 109.46694 * 335.13311 * 20 19 2 48 48 H 0.97000 * 119.99400 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5686 -1.8813 3.1442 8 6 5.6431 -1.5355 2.1315 9 6 6.4410 -2.1098 3.0799 10 7 7.7107 -2.0010 2.6401 11 6 8.9155 -2.4785 3.3230 12 6 8.6018 -3.7818 4.0642 13 6 9.8433 -4.2299 4.8402 14 8 10.2428 -3.1940 5.7399 15 6 10.5945 -1.9668 5.0976 16 6 9.3826 -1.4267 4.3337 17 7 7.6569 -1.3373 1.4061 18 7 6.4244 -1.0786 1.1380 19 7 2.0183 -0.6907 -1.1961 20 6 1.6645 -2.0933 -1.4280 21 6 2.8057 -0.0252 -2.0975 22 1 3.3702 0.8410 -1.7853 23 6 2.8782 -0.4640 -3.4125 24 7 2.0109 -1.3468 -3.8605 25 14 4.2068 0.1986 -4.5461 26 1 5.0497 1.1714 -3.8055 27 1 5.0527 -0.9236 -5.0262 28 1 3.5747 0.8741 -5.7077 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6053 -1.7198 1.2952 33 1 1.7515 -0.1583 2.1370 34 1 3.9823 -0.4628 0.4317 35 1 6.1168 -2.5656 4.0038 36 1 9.7035 -2.6560 2.5911 37 1 7.7792 -3.6162 4.7599 38 1 8.3226 -4.5518 3.3450 39 1 10.6531 -4.4357 4.1402 40 1 9.6126 -5.1330 5.4052 41 1 11.4141 -2.1431 4.4010 42 1 10.9049 -1.2398 5.8479 43 1 9.6612 -0.5139 3.8072 44 1 8.5759 -1.2113 5.0344 45 1 0.7891 -2.1449 -2.0754 46 1 2.5003 -2.6048 -1.9054 47 1 1.4407 -2.5737 -0.4755 48 1 2.0618 -1.6536 -4.7792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755325556.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:21 Heat of formation + Delta-G solvation = 36.505194 kcal Electronic energy + Delta-G solvation = -29600.446841 eV Core-core repulsion = 25500.557364 eV Total energy + Delta-G solvation = -4099.889477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.30147 -39.92444 -38.96974 -36.64390 -35.77195 -33.73035 -32.08518 -31.92094 -31.68590 -30.77618 -29.24856 -26.41202 -25.95436 -25.52269 -24.37465 -23.30264 -22.73471 -22.56508 -20.58536 -20.13991 -19.33733 -18.12562 -16.92784 -16.77652 -16.72907 -16.10478 -15.77649 -15.63708 -15.38491 -15.19609 -14.92096 -14.62551 -14.24652 -14.15707 -13.77329 -13.73928 -13.10379 -12.72796 -12.69606 -12.37849 -12.24061 -12.12163 -12.08720 -11.96610 -11.72710 -11.43126 -11.37490 -11.03793 -10.96677 -10.77557 -10.68673 -10.40980 -10.34873 -10.31729 -10.20224 -9.82892 -9.78368 -9.70630 -9.28557 -8.52907 -8.45728 -6.73022 -5.67895 -3.15147 1.09616 1.81918 1.86783 3.22856 3.42639 3.50465 3.51997 3.53301 3.59559 3.78473 3.93864 4.18918 4.19301 4.27527 4.49875 4.53542 4.62436 4.69885 4.83497 4.90246 5.02144 5.03793 5.06375 5.18003 5.29470 5.37200 5.43403 5.48094 5.52261 5.64181 5.84740 5.97992 6.14210 6.23843 6.25735 6.35052 6.48008 6.52281 6.80427 6.89013 6.91622 7.07269 7.43923 7.78938 7.85381 7.87622 8.15773 8.43209 8.61273 9.27447 9.90378 10.39283 11.36347 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.002707 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.310027 B =10340.576284 C =11566.126706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.106 3.894 5 N -0.687 5.687 6 C 0.596 3.404 7 O -0.558 6.558 8 C -0.091 4.091 9 C 0.088 3.912 10 N -0.362 5.362 11 C 0.152 3.848 12 C -0.172 4.172 13 C 0.067 3.933 14 O -0.379 6.379 15 C 0.066 3.934 16 C -0.169 4.169 17 N -0.067 5.067 18 N -0.192 5.192 19 N -0.593 5.593 20 C 0.165 3.835 21 C -0.256 4.256 22 H 0.070 0.930 23 C 0.005 3.995 24 N -0.905 5.905 25 Si 0.901 3.099 26 H -0.276 1.276 27 H -0.290 1.290 28 H -0.292 1.292 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.419 0.581 35 H 0.200 0.800 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.030 0.970 46 H 0.039 0.961 47 H -0.002 1.002 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.135 -3.893 19.142 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.020 4.020 5 N -0.336 5.336 6 C 0.379 3.621 7 O -0.437 6.437 8 C -0.230 4.230 9 C -0.069 4.069 10 N -0.147 5.147 11 C 0.050 3.950 12 C -0.211 4.211 13 C -0.010 4.010 14 O -0.297 6.297 15 C -0.011 4.011 16 C -0.208 4.208 17 N -0.047 5.047 18 N -0.065 5.065 19 N -0.316 5.316 20 C 0.020 3.980 21 C -0.386 4.386 22 H 0.087 0.913 23 C -0.194 4.194 24 N -0.549 5.549 25 Si 0.732 3.268 26 H -0.201 1.201 27 H -0.217 1.217 28 H -0.219 1.219 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.257 0.743 35 H 0.217 0.783 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.048 0.952 46 H 0.057 0.943 47 H 0.017 0.983 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.519 -3.757 18.619 24.527 hybrid contribution 0.324 0.015 -0.701 0.772 sum 15.843 -3.742 17.918 24.209 Atomic orbital electron populations 1.22184 0.97395 1.01366 1.00581 1.20626 0.92603 0.95614 0.86360 0.91260 1.22033 0.79001 1.01480 0.99476 1.45744 1.08411 1.56725 1.22745 1.16769 0.83652 0.78600 0.83058 1.90753 1.68613 1.50322 1.34022 1.21615 0.96358 1.10381 0.94677 1.23205 0.83781 0.99160 1.00738 1.50644 1.06393 1.40857 1.16778 1.21579 0.84636 0.94351 0.94432 1.22722 1.01270 0.96311 1.00750 1.22570 0.94274 0.91142 0.93049 1.88001 1.86593 1.21549 1.33550 1.22590 0.94689 0.86520 0.97348 1.22709 1.00637 0.98997 0.98423 1.82040 1.12962 1.13947 0.95709 1.74754 0.97391 1.13313 1.21077 1.43977 1.58160 1.08002 1.21449 1.20725 0.99764 0.83405 0.94103 1.19243 1.18547 1.11576 0.89187 0.91273 1.25005 0.98262 0.99484 0.96612 1.70085 1.35155 1.34389 1.15316 0.86226 0.81535 0.78286 0.80791 1.20108 1.21728 1.21935 0.93160 0.93970 0.92171 0.91855 0.92202 0.74346 0.78345 0.86776 0.89364 0.89070 0.92313 0.87533 0.92303 0.87703 0.89249 0.89764 0.95168 0.94270 0.98328 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.19 37.16 0.34 -2.45 16 2 C 0.16 3.11 2.87 -67.93 -0.19 2.91 16 3 H 0.07 1.37 7.86 -51.93 -0.41 0.96 16 4 C 0.11 1.93 4.93 -4.04 -0.02 1.91 16 5 N -0.69 -12.96 5.38 -61.35 -0.33 -13.29 16 6 C 0.60 10.85 7.82 -12.48 -0.10 10.75 16 7 O -0.56 -10.89 16.86 5.28 0.09 -10.80 16 8 C -0.09 -1.47 6.99 -83.55 -0.58 -2.06 16 9 C 0.09 1.07 10.40 -16.83 -0.18 0.90 16 10 N -0.36 -4.09 3.55 -54.39 -0.19 -4.28 16 11 C 0.15 1.09 3.31 -67.76 -0.22 0.86 16 12 C -0.17 -0.94 5.15 -26.59 -0.14 -1.08 16 13 C 0.07 0.31 6.84 37.21 0.25 0.56 16 14 O -0.38 -2.47 10.77 -35.23 -0.38 -2.85 16 15 C 0.07 0.32 6.84 37.21 0.25 0.57 16 16 C -0.17 -1.02 5.75 -26.59 -0.15 -1.18 16 17 N -0.07 -1.03 13.78 60.35 0.83 -0.20 16 18 N -0.19 -3.36 12.04 32.85 0.40 -2.97 16 19 N -0.59 -14.30 2.28 -173.48 -0.40 -14.69 16 20 C 0.16 4.06 8.00 59.85 0.48 4.54 16 21 C -0.26 -6.83 9.31 -15.06 -0.14 -6.97 16 22 H 0.07 1.80 7.82 -52.48 -0.41 1.39 16 23 C 0.00 0.14 5.10 -17.43 -0.09 0.05 16 24 N -0.90 -26.34 10.72 55.49 0.59 -25.75 16 25 Si 0.90 22.11 29.57 -169.99 -5.03 17.08 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H 0.05 0.91 7.67 -51.93 -0.40 0.51 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.21 6.86 -51.93 -0.36 0.86 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.42 8.46 7.58 -40.82 -0.31 8.15 16 35 H 0.20 1.85 7.27 -52.49 -0.38 1.47 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.49 7.09 -51.93 -0.37 0.12 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 46 H 0.04 1.05 7.35 -51.93 -0.38 0.67 16 47 H 0.00 -0.04 6.53 -51.93 -0.34 -0.38 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -33.23 390.05 -6.54 -39.77 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.52 Total: 2.77 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -0.49 Total: 9.33 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.90 Total: -61.18 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.29 Total: -13.65 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.23 -6.54 -39.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755325556.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.278 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds