Wall clock time and date at job start Tue Mar 31 2020 19:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46983 * 2 1 4 4 C 1.53007 * 109.47087 * 240.00044 * 2 1 3 5 5 N 1.46495 * 109.46847 * 185.00424 * 4 2 1 6 6 C 1.46502 * 119.99723 * 269.99400 * 5 4 2 7 7 C 1.34773 * 120.00314 * 90.00583 * 5 4 2 8 8 O 1.21589 * 120.00189 * 3.44258 * 7 5 4 9 9 C 1.47525 * 119.99835 * 183.17513 * 7 5 4 10 10 C 1.36594 * 125.76985 * 173.66718 * 9 7 5 11 11 N 1.34818 * 106.84278 * 179.83887 * 10 9 7 12 12 C 1.46496 * 126.59939 * 180.12931 * 11 10 9 13 13 C 1.53000 * 109.47310 * 125.31201 * 12 11 10 14 14 H 1.08994 * 110.43876 * 303.91318 * 13 12 11 15 15 C 1.54809 * 110.48617 * 181.22001 * 13 12 11 16 16 C 1.54998 * 102.09052 * 220.44555 * 15 13 12 17 17 O 1.44373 * 103.49243 * 37.02755 * 16 15 13 18 18 C 1.43748 * 106.97634 * 319.93858 * 17 16 15 19 19 N 1.40208 * 106.80485 * 0.41732 * 11 10 9 20 20 N 1.28765 * 108.37158 * 359.73357 * 19 11 10 21 21 N 1.46497 * 109.46833 * 120.00160 * 2 1 3 22 22 C 1.36936 * 120.00022 * 274.99458 * 21 2 1 23 23 H 1.07997 * 119.99975 * 0.02562 * 22 21 2 24 24 C 1.38814 * 120.00111 * 180.02562 * 22 21 2 25 25 N 1.31624 * 120.00047 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00322 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47224 * 89.99639 * 26 24 22 28 28 H 1.48492 * 109.47224 * 210.00247 * 26 24 22 29 29 H 1.48504 * 109.46710 * 330.00178 * 26 24 22 30 30 H 1.08994 * 109.47239 * 300.00147 * 1 2 3 31 31 H 1.09004 * 109.46918 * 59.99927 * 1 2 3 32 32 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47192 * 64.99736 * 4 2 1 34 34 H 1.08997 * 109.46923 * 305.00005 * 4 2 1 35 35 H 1.08997 * 109.47541 * 264.12976 * 6 5 4 36 36 H 1.09005 * 109.46871 * 24.13052 * 6 5 4 37 37 H 1.08998 * 109.46924 * 144.12579 * 6 5 4 38 38 H 1.08010 * 126.57856 * 359.97438 * 10 9 7 39 39 H 1.08999 * 109.47204 * 245.32137 * 12 11 10 40 40 H 1.09010 * 109.46661 * 5.31441 * 12 11 10 41 41 H 1.08995 * 110.91190 * 338.64485 * 15 13 12 42 42 H 1.09000 * 110.90258 * 102.25435 * 15 13 12 43 43 H 1.09002 * 110.62019 * 278.52624 * 16 15 13 44 44 H 1.09005 * 110.75114 * 155.59211 * 16 15 13 45 45 H 1.09004 * 109.87784 * 267.08845 * 18 17 16 46 46 H 1.09000 * 110.00792 * 146.00374 * 18 17 16 47 47 H 0.97005 * 120.00099 * 95.00231 * 21 2 1 48 48 H 0.96999 * 120.00110 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7613 7 6 4.0757 -1.8988 -0.6117 8 8 3.3851 -2.8083 -0.1942 9 6 5.5441 -1.9718 -0.4898 10 6 6.2429 -2.9364 0.1787 11 7 7.5502 -2.6365 0.0432 12 6 8.6807 -3.3906 0.5904 13 6 9.6496 -3.7482 -0.5384 14 1 9.1319 -4.2975 -1.3247 15 6 10.8394 -4.5730 0.0097 16 6 12.0369 -3.9736 -0.7707 17 8 11.7153 -2.5686 -0.8541 18 6 10.3039 -2.4757 -1.1107 19 7 7.6196 -1.4601 -0.7166 20 7 6.4202 -1.0971 -1.0129 21 7 2.0183 -0.6906 1.1961 22 6 2.1491 -0.0075 2.3757 23 1 1.8920 1.0403 2.4243 24 6 2.6123 -0.6618 3.5090 25 7 2.9262 -1.9387 3.4497 26 14 2.7901 0.2698 5.1183 27 1 1.5225 0.1777 5.8863 28 1 3.8951 -0.3228 5.9138 29 1 3.0941 1.6953 4.8339 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7517 -0.1584 -2.1370 34 1 1.6054 -1.7198 -1.2952 35 1 4.6289 -0.0409 -2.7741 36 1 3.7698 1.1660 -1.7874 37 1 5.2250 0.3658 -1.1469 38 1 5.8277 -3.7792 0.7116 39 1 9.1970 -2.7832 1.3338 40 1 8.3151 -4.3047 1.0586 41 1 10.9580 -4.4194 1.0822 42 1 10.7169 -5.6317 -0.2191 43 1 12.1041 -4.4117 -1.7665 44 1 12.9679 -4.1224 -0.2236 45 1 10.1254 -2.4179 -2.1845 46 1 9.8927 -1.5942 -0.6188 47 1 2.2490 -1.6318 1.1526 48 1 3.2502 -2.3958 4.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755611265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:45 Heat of formation + Delta-G solvation = 47.580139 kcal Electronic energy + Delta-G solvation = -30203.643607 eV Core-core repulsion = 26104.234376 eV Total energy + Delta-G solvation = -4099.409232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.05886 -39.80075 -39.03249 -35.88190 -35.41668 -34.20887 -32.46164 -31.87974 -30.72369 -29.64508 -28.56032 -27.07799 -26.54150 -25.59844 -23.62194 -23.19714 -22.54528 -22.02678 -20.99791 -20.01476 -19.12164 -17.54659 -17.02039 -16.83894 -16.55692 -15.88630 -15.73409 -15.65565 -15.25891 -14.79987 -14.49535 -14.47464 -14.02825 -13.69530 -13.49443 -13.38675 -13.00548 -12.81756 -12.46877 -12.33730 -12.24146 -12.10730 -11.91213 -11.83858 -11.74608 -11.46397 -11.32363 -11.26040 -11.19771 -10.79433 -10.65815 -10.50466 -10.30201 -10.19768 -9.96017 -9.95307 -9.53581 -9.38981 -8.99151 -8.79578 -7.95418 -6.77480 -5.60028 -2.88136 1.33630 2.06247 2.08257 3.46170 3.48300 3.53329 3.54239 3.58439 3.92114 3.97838 4.02260 4.28018 4.50868 4.59501 4.68815 4.74755 4.78021 4.85606 4.97142 5.15668 5.24328 5.27767 5.32592 5.43954 5.48787 5.51363 5.60661 5.65678 5.67682 5.73742 5.76653 5.90975 6.02706 6.11255 6.16480 6.35790 6.42293 6.47046 6.53450 6.54634 6.74611 6.89771 7.06240 7.24539 7.80906 7.90599 8.15236 8.57175 8.79965 9.69694 10.32911 10.71519 11.60731 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.003208 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.870834 B = 8727.058937 C =10075.345062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.044 0.956 4 C 0.110 3.890 5 N -0.594 5.594 6 C 0.080 3.920 7 C 0.611 3.389 8 O -0.521 6.521 9 C -0.081 4.081 10 C 0.102 3.898 11 N -0.366 5.366 12 C 0.131 3.869 13 C -0.135 4.135 14 H 0.092 0.908 15 C -0.147 4.147 16 C 0.046 3.954 17 O -0.378 6.378 18 C 0.051 3.949 19 N -0.082 5.082 20 N -0.203 5.203 21 N -0.721 5.721 22 C -0.232 4.232 23 H 0.065 0.935 24 C -0.014 4.014 25 N -0.923 5.923 26 Si 0.898 3.102 27 H -0.291 1.291 28 H -0.294 1.294 29 H -0.284 1.284 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.204 0.796 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.397 0.603 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.453 -5.598 -11.744 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.013 4.013 5 N -0.326 5.326 6 C -0.063 4.063 7 C 0.396 3.604 8 O -0.395 6.395 9 C -0.220 4.220 10 C -0.054 4.054 11 N -0.152 5.152 12 C 0.010 3.990 13 C -0.155 4.155 14 H 0.110 0.890 15 C -0.186 4.186 16 C -0.031 4.031 17 O -0.297 6.297 18 C -0.026 4.026 19 N -0.061 5.061 20 N -0.076 5.076 21 N -0.366 5.366 22 C -0.364 4.364 23 H 0.083 0.917 24 C -0.210 4.210 25 N -0.572 5.572 26 Si 0.730 3.270 27 H -0.219 1.219 28 H -0.221 1.221 29 H -0.210 1.210 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.221 0.779 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.235 0.765 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.212 -4.784 -11.983 19.947 hybrid contribution -0.624 -0.645 1.610 1.844 sum 14.588 -5.429 -10.373 18.705 Atomic orbital electron populations 1.22400 0.99032 1.00987 0.99937 1.20666 0.92008 0.95679 0.87487 0.93774 1.21882 0.78896 1.02202 0.98305 1.47309 1.06742 1.20764 1.57741 1.22036 0.96181 0.89682 0.98427 1.16572 0.84001 0.82422 0.77392 1.90796 1.62632 1.38191 1.47897 1.21499 0.95881 0.96657 1.07918 1.23410 0.82991 1.00938 0.98041 1.50363 1.06160 1.20501 1.38164 1.22087 0.84835 0.96275 0.95822 1.22883 0.96515 0.98034 0.98068 0.88972 1.23164 0.93626 1.00171 1.01596 1.23541 0.98133 0.81998 0.99416 1.88913 1.23849 1.23713 1.93202 1.23370 0.80454 0.98124 1.00610 1.81795 1.15210 0.97003 1.12122 1.74698 0.96446 1.20524 1.15979 1.42667 1.77623 1.11622 1.04688 1.19214 1.35907 0.93635 0.87615 0.91721 1.24694 1.02752 0.95943 0.97631 1.69744 1.51008 1.08370 1.28062 0.86318 0.77171 0.78842 0.84672 1.21907 1.22076 1.21007 0.92677 0.94566 0.93336 0.90893 0.90110 0.93337 0.91928 0.88870 0.77885 0.88039 0.87258 0.89692 0.89509 0.92144 0.88755 0.92034 0.87847 0.76506 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.49 37.16 0.35 -2.68 16 2 C 0.15 3.19 3.20 -67.93 -0.22 2.97 16 3 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 4 C 0.11 1.96 5.12 -4.04 -0.02 1.94 16 5 N -0.59 -10.95 2.77 -182.82 -0.51 -11.46 16 6 C 0.08 1.24 9.59 59.85 0.57 1.81 16 7 C 0.61 12.53 6.87 -12.48 -0.09 12.45 16 8 O -0.52 -12.22 14.39 5.29 0.08 -12.14 16 9 C -0.08 -1.46 6.70 -83.55 -0.56 -2.02 16 10 C 0.10 1.55 11.28 -16.83 -0.19 1.36 16 11 N -0.37 -4.71 3.69 -61.06 -0.23 -4.93 16 12 C 0.13 1.11 5.73 -4.04 -0.02 1.08 16 13 C -0.14 -1.03 3.30 -89.09 -0.29 -1.32 16 14 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 15 C -0.15 -0.82 6.71 -24.72 -0.17 -0.98 16 16 C 0.05 0.31 7.72 38.21 0.29 0.61 16 17 O -0.38 -4.01 11.52 -35.23 -0.41 -4.42 16 18 C 0.05 0.51 6.59 37.73 0.25 0.76 16 19 N -0.08 -1.24 11.46 60.35 0.69 -0.54 16 20 N -0.20 -3.42 8.80 32.85 0.29 -3.13 16 21 N -0.72 -19.01 4.52 -53.43 -0.24 -19.25 16 22 C -0.23 -6.68 9.93 -15.06 -0.15 -6.83 16 23 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 25 N -0.92 -28.55 13.06 55.49 0.72 -27.82 16 26 Si 0.90 23.07 29.55 -169.99 -5.02 18.05 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 29 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.08 1.52 7.38 -51.93 -0.38 1.14 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.86 8.03 -51.93 -0.42 0.44 16 37 H 0.09 1.57 5.30 -51.93 -0.28 1.30 16 38 H 0.20 2.76 8.06 -52.48 -0.42 2.33 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 0.65 8.08 -51.92 -0.42 0.23 16 41 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 1.19 6.21 -51.93 -0.32 0.87 16 47 H 0.40 11.32 5.17 -40.82 -0.21 11.11 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -36.15 388.60 -6.57 -42.72 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.47 Total: 8.45 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.33 Total: 8.63 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: 0.73 Total: -67.14 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.33 Total: -16.56 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.15 -6.57 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755611265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.296 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds