Wall clock time and date at job start Tue Mar 31 2020 19:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46983 * 2 1 4 4 C 1.53007 * 109.47087 * 240.00044 * 2 1 3 5 5 N 1.46495 * 109.46847 * 185.00424 * 4 2 1 6 6 C 1.46502 * 119.99723 * 269.99400 * 5 4 2 7 7 C 1.34773 * 120.00314 * 90.00583 * 5 4 2 8 8 O 1.21589 * 120.00189 * 3.44258 * 7 5 4 9 9 C 1.47525 * 119.99835 * 183.17513 * 7 5 4 10 10 C 1.36594 * 125.76985 * 173.66718 * 9 7 5 11 11 N 1.34818 * 106.84278 * 179.83887 * 10 9 7 12 12 C 1.46496 * 126.59939 * 180.12931 * 11 10 9 13 13 C 1.53000 * 109.47310 * 125.31201 * 12 11 10 14 14 H 1.08994 * 110.43876 * 303.91318 * 13 12 11 15 15 C 1.54809 * 110.48617 * 181.22001 * 13 12 11 16 16 C 1.54998 * 102.09052 * 220.44555 * 15 13 12 17 17 O 1.44373 * 103.49243 * 37.02755 * 16 15 13 18 18 C 1.43748 * 106.97634 * 319.93858 * 17 16 15 19 19 N 1.40208 * 106.80485 * 0.41732 * 11 10 9 20 20 N 1.28765 * 108.37158 * 359.73357 * 19 11 10 21 21 N 1.46497 * 109.46833 * 120.00160 * 2 1 3 22 22 C 1.36936 * 120.00022 * 274.99458 * 21 2 1 23 23 H 1.07997 * 119.99975 * 0.02562 * 22 21 2 24 24 C 1.38814 * 120.00111 * 180.02562 * 22 21 2 25 25 N 1.31624 * 120.00047 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00322 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47224 * 89.99639 * 26 24 22 28 28 H 1.48492 * 109.47224 * 210.00247 * 26 24 22 29 29 H 1.48504 * 109.46710 * 330.00178 * 26 24 22 30 30 H 1.08994 * 109.47239 * 300.00147 * 1 2 3 31 31 H 1.09004 * 109.46918 * 59.99927 * 1 2 3 32 32 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47192 * 64.99736 * 4 2 1 34 34 H 1.08997 * 109.46923 * 305.00005 * 4 2 1 35 35 H 1.08997 * 109.47541 * 264.12976 * 6 5 4 36 36 H 1.09005 * 109.46871 * 24.13052 * 6 5 4 37 37 H 1.08998 * 109.46924 * 144.12579 * 6 5 4 38 38 H 1.08010 * 126.57856 * 359.97438 * 10 9 7 39 39 H 1.08999 * 109.47204 * 245.32137 * 12 11 10 40 40 H 1.09010 * 109.46661 * 5.31441 * 12 11 10 41 41 H 1.08995 * 110.91190 * 338.64485 * 15 13 12 42 42 H 1.09000 * 110.90258 * 102.25435 * 15 13 12 43 43 H 1.09002 * 110.62019 * 278.52624 * 16 15 13 44 44 H 1.09005 * 110.75114 * 155.59211 * 16 15 13 45 45 H 1.09004 * 109.87784 * 267.08845 * 18 17 16 46 46 H 1.09000 * 110.00792 * 146.00374 * 18 17 16 47 47 H 0.97005 * 120.00099 * 95.00231 * 21 2 1 48 48 H 0.96999 * 120.00110 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7613 7 6 4.0757 -1.8988 -0.6117 8 8 3.3851 -2.8083 -0.1942 9 6 5.5441 -1.9718 -0.4898 10 6 6.2429 -2.9364 0.1787 11 7 7.5502 -2.6365 0.0432 12 6 8.6807 -3.3906 0.5904 13 6 9.6496 -3.7482 -0.5384 14 1 9.1319 -4.2975 -1.3247 15 6 10.8394 -4.5730 0.0097 16 6 12.0369 -3.9736 -0.7707 17 8 11.7153 -2.5686 -0.8541 18 6 10.3039 -2.4757 -1.1107 19 7 7.6196 -1.4601 -0.7166 20 7 6.4202 -1.0971 -1.0129 21 7 2.0183 -0.6906 1.1961 22 6 2.1491 -0.0075 2.3757 23 1 1.8920 1.0403 2.4243 24 6 2.6123 -0.6618 3.5090 25 7 2.9262 -1.9387 3.4497 26 14 2.7901 0.2698 5.1183 27 1 1.5225 0.1777 5.8863 28 1 3.8951 -0.3228 5.9138 29 1 3.0941 1.6953 4.8339 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7517 -0.1584 -2.1370 34 1 1.6054 -1.7198 -1.2952 35 1 4.6289 -0.0409 -2.7741 36 1 3.7698 1.1660 -1.7874 37 1 5.2250 0.3658 -1.1469 38 1 5.8277 -3.7792 0.7116 39 1 9.1970 -2.7832 1.3338 40 1 8.3151 -4.3047 1.0586 41 1 10.9580 -4.4194 1.0822 42 1 10.7169 -5.6317 -0.2191 43 1 12.1041 -4.4117 -1.7665 44 1 12.9679 -4.1224 -0.2236 45 1 10.1254 -2.4179 -2.1845 46 1 9.8927 -1.5942 -0.6188 47 1 2.2490 -1.6318 1.1526 48 1 3.2502 -2.3958 4.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755611265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:44 Heat of formation + Delta-G solvation = 21.716149 kcal Electronic energy + Delta-G solvation = -30204.765154 eV Core-core repulsion = 26104.234376 eV Total energy + Delta-G solvation = -4100.530779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.24230 -40.66944 -40.33221 -37.55143 -36.41683 -35.80229 -33.88559 -33.27397 -31.91626 -30.62179 -30.25678 -28.28382 -27.55902 -26.96664 -25.68246 -24.06620 -23.78643 -22.91575 -21.85264 -21.47934 -20.50756 -19.29324 -18.47314 -17.58967 -17.39214 -17.26716 -17.04940 -16.85030 -16.48745 -16.11759 -15.87505 -15.69924 -15.50680 -15.08641 -14.66152 -14.52251 -14.18251 -13.97695 -13.79381 -13.74034 -13.54791 -13.52260 -13.10136 -13.01653 -12.82767 -12.75104 -12.66114 -12.44797 -12.34698 -12.19095 -12.13272 -11.89316 -11.81694 -11.66070 -11.55914 -11.24070 -10.99705 -10.86646 -10.66807 -10.26494 -9.42123 -8.86932 -7.82113 -5.10040 0.16761 0.73545 1.07213 1.43562 1.45474 1.52737 2.08745 2.48796 2.58930 2.95788 3.21446 3.25198 3.39995 3.46903 3.68130 3.73892 3.93527 3.99887 4.07188 4.14969 4.22365 4.23898 4.30820 4.40931 4.45450 4.49457 4.54956 4.61859 4.67144 4.77296 4.79197 4.83725 4.85354 4.90817 4.96772 4.99139 5.11337 5.12781 5.23407 5.31604 5.44624 5.51709 5.57894 5.80107 5.89548 6.37546 6.48035 6.91066 7.30956 7.45587 8.28422 8.53363 9.39439 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.003208 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.870834 B = 8727.058937 C =10075.345062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.044 0.956 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.081 3.919 7 C 0.600 3.400 8 O -0.563 6.563 9 C -0.112 4.112 10 C 0.105 3.895 11 N -0.349 5.349 12 C 0.120 3.880 13 C -0.128 4.128 14 H 0.095 0.905 15 C -0.136 4.136 16 C 0.037 3.963 17 O -0.405 6.405 18 C 0.050 3.950 19 N -0.086 5.086 20 N -0.211 5.211 21 N -0.736 5.736 22 C -0.233 4.233 23 H 0.067 0.933 24 C -0.075 4.075 25 N -0.957 5.957 26 Si 0.962 3.038 27 H -0.290 1.290 28 H -0.297 1.297 29 H -0.275 1.275 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.120 0.880 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.217 0.783 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.385 0.615 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.190 -5.466 -12.225 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.062 0.938 4 C -0.008 4.008 5 N -0.326 5.326 6 C -0.062 4.062 7 C 0.387 3.613 8 O -0.441 6.441 9 C -0.251 4.251 10 C -0.053 4.053 11 N -0.134 5.134 12 C 0.001 3.999 13 C -0.147 4.147 14 H 0.114 0.886 15 C -0.174 4.174 16 C -0.039 4.039 17 O -0.324 6.324 18 C -0.026 4.026 19 N -0.066 5.066 20 N -0.085 5.085 21 N -0.380 5.380 22 C -0.366 4.366 23 H 0.085 0.915 24 C -0.267 4.267 25 N -0.608 5.608 26 Si 0.792 3.208 27 H -0.217 1.217 28 H -0.224 1.224 29 H -0.200 1.200 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.234 0.766 39 H 0.126 0.874 40 H 0.160 0.840 41 H 0.113 0.887 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.221 0.779 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.962 -4.593 -12.513 20.796 hybrid contribution -0.769 -0.658 1.681 1.962 sum 15.194 -5.251 -10.831 19.384 Atomic orbital electron populations 1.22230 0.97085 1.00765 1.01167 1.20980 0.93315 0.95421 0.86875 0.93776 1.21904 0.78624 1.01776 0.98535 1.47485 1.07300 1.20795 1.57046 1.22145 0.95475 0.89648 0.98901 1.16996 0.84961 0.82425 0.76915 1.90753 1.63766 1.39724 1.49856 1.21441 0.95233 0.98382 1.10088 1.23607 0.83665 1.00649 0.97348 1.50624 1.06468 1.19593 1.36709 1.22595 0.83849 0.97204 0.96286 1.22829 0.96863 0.97205 0.97815 0.88638 1.23168 0.91498 1.00926 1.01847 1.23806 0.99384 0.80285 1.00443 1.88883 1.23977 1.26257 1.93302 1.23284 0.80757 0.98613 0.99994 1.81731 1.14578 0.97896 1.12372 1.74687 0.96613 1.20679 1.16515 1.42885 1.78053 1.11284 1.05766 1.19554 1.34497 0.93796 0.88734 0.91506 1.25438 1.03608 0.96874 1.00818 1.69915 1.52546 1.09803 1.28512 0.85311 0.76778 0.77963 0.80764 1.21705 1.22368 1.20014 0.94578 0.90115 0.94282 0.86168 0.91525 0.91242 0.89981 0.90479 0.76618 0.87418 0.84008 0.88728 0.87140 0.91420 0.87281 0.92915 0.89884 0.77936 0.94567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 9.49 71.98 0.68 -4.76 16 2 C 0.14 5.85 3.20 45.00 0.14 5.99 16 3 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16 4 C 0.11 3.92 5.12 86.38 0.44 4.36 16 5 N -0.60 -21.69 2.77 -850.57 -2.36 -24.05 16 6 C 0.08 2.39 9.59 127.77 1.23 3.61 16 7 C 0.60 25.14 6.87 86.69 0.60 25.73 16 8 O -0.56 -27.38 14.39 -3.99 -0.06 -27.44 16 9 C -0.11 -4.13 6.70 40.82 0.27 -3.86 16 10 C 0.10 3.19 11.28 83.85 0.95 4.13 16 11 N -0.35 -8.72 3.69 -347.09 -1.28 -10.00 16 12 C 0.12 1.80 5.73 86.38 0.49 2.30 16 13 C -0.13 -1.72 3.30 -9.80 -0.03 -1.75 16 14 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 15 C -0.14 -1.13 6.71 31.90 0.21 -0.91 16 16 C 0.04 0.43 7.72 72.67 0.56 0.99 16 17 O -0.40 -8.33 11.52 -148.98 -1.72 -10.05 16 18 C 0.05 0.99 6.59 72.36 0.48 1.46 16 19 N -0.09 -2.59 11.46 37.02 0.42 -2.17 16 20 N -0.21 -7.18 8.80 -50.00 -0.44 -7.62 16 21 N -0.74 -39.26 4.52 -322.94 -1.46 -40.72 16 22 C -0.23 -13.54 9.93 84.03 0.83 -12.71 16 23 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 24 C -0.07 -4.46 5.50 84.86 0.47 -4.00 16 25 N -0.96 -60.42 13.06 21.65 0.28 -60.13 16 26 Si 0.96 47.93 29.55 68.60 2.03 49.96 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 28 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 29 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.12 2.94 8.07 -2.39 -0.02 2.93 16 34 H 0.07 2.49 7.38 -2.39 -0.02 2.47 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 2.06 8.03 -2.38 -0.02 2.04 16 37 H 0.08 2.59 5.30 -2.39 -0.01 2.57 16 38 H 0.22 5.87 8.06 -2.91 -0.02 5.85 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.14 1.27 8.08 -2.38 -0.02 1.25 16 41 H 0.09 0.64 7.87 -2.39 -0.02 0.62 16 42 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 1.94 6.21 -2.39 -0.01 1.93 16 47 H 0.38 22.53 5.17 -92.70 -0.48 22.05 16 48 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -80.86 388.60 3.23 -77.63 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.49 Total: 33.99 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 7.32 Total: 20.61 kcal Atomic # 7 Polarization: -139.87 SS G_CDS: -4.84 Total: -144.70 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.77 Total: -37.49 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -80.86 3.23 -77.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755611265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.342 kcal (2) G-P(sol) polarization free energy of solvation -80.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds