Wall clock time and date at job start Tue Mar 31 2020 19:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47449 * 2 1 4 4 C 1.52998 * 109.47429 * 120.00553 * 2 1 3 5 5 N 1.46500 * 109.47319 * 174.99572 * 4 2 1 6 6 C 1.46491 * 120.00075 * 269.99864 * 5 4 2 7 7 C 1.34781 * 119.99653 * 89.99903 * 5 4 2 8 8 O 1.21594 * 120.00029 * 356.19123 * 7 5 4 9 9 C 1.47519 * 119.99880 * 176.18583 * 7 5 4 10 10 C 1.36593 * 125.77055 * 185.90216 * 9 7 5 11 11 N 1.34823 * 106.84022 * 179.89928 * 10 9 7 12 12 C 1.46492 * 126.59366 * 180.10862 * 11 10 9 13 13 C 1.53006 * 109.47263 * 125.27346 * 12 11 10 14 14 H 1.08999 * 110.45317 * 52.39537 * 13 12 11 15 15 C 1.54509 * 110.51014 * 174.99744 * 13 12 11 16 16 C 1.54485 * 104.06193 * 118.64672 * 15 13 12 17 17 O 1.44430 * 104.80095 * 23.97743 * 16 15 13 18 18 C 1.44423 * 105.27575 * 319.48735 * 17 16 15 19 19 N 1.40201 * 106.80808 * 0.35573 * 11 10 9 20 20 N 1.28762 * 108.37110 * 359.77225 * 19 11 10 21 21 N 1.46503 * 109.47097 * 240.00304 * 2 1 3 22 22 C 1.36941 * 119.99661 * 84.99821 * 21 2 1 23 23 H 1.07994 * 120.00198 * 0.02562 * 22 21 2 24 24 C 1.38816 * 119.99670 * 180.02562 * 22 21 2 25 25 N 1.31619 * 119.99638 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 120.00001 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46794 * 90.00900 * 26 24 22 28 28 H 1.48507 * 109.47438 * 210.00275 * 26 24 22 29 29 H 1.48498 * 109.47521 * 330.00779 * 26 24 22 30 30 H 1.09000 * 109.47114 * 59.99731 * 1 2 3 31 31 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46663 * 299.99803 * 1 2 3 33 33 H 1.09000 * 109.47023 * 294.99740 * 4 2 1 34 34 H 1.08997 * 109.47061 * 54.99888 * 4 2 1 35 35 H 1.09008 * 109.47228 * 95.72240 * 6 5 4 36 36 H 1.09008 * 109.47271 * 215.72049 * 6 5 4 37 37 H 1.08997 * 109.47584 * 335.72334 * 6 5 4 38 38 H 1.08002 * 126.58294 * 0.03786 * 10 9 7 39 39 H 1.09004 * 109.47464 * 245.27340 * 12 11 10 40 40 H 1.09006 * 109.47493 * 5.27252 * 12 11 10 41 41 H 1.09003 * 110.50635 * 237.28972 * 15 13 12 42 42 H 1.08993 * 110.51416 * 0.02562 * 15 13 12 43 43 H 1.08995 * 110.37183 * 142.80439 * 16 15 13 44 44 H 1.08994 * 110.36832 * 265.14733 * 16 15 13 45 45 H 1.09000 * 110.37450 * 281.68792 * 18 17 16 46 46 H 1.09000 * 110.37426 * 159.34461 * 18 17 16 47 47 H 0.96997 * 120.00321 * 264.99977 * 21 2 1 48 48 H 0.97001 * 119.99674 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1257 -1.9920 0.5610 7 6 4.2676 0.1490 1.7155 8 8 3.7501 1.1485 2.1757 9 6 5.7356 0.0042 1.7319 10 6 6.6156 0.8595 2.3317 11 7 7.8508 0.3647 2.1146 12 6 9.1163 0.9431 2.5729 13 6 9.8980 -0.1050 3.3676 14 1 9.9941 -1.0257 2.7921 15 6 11.2912 0.4384 3.7561 16 6 11.2809 0.4277 5.3009 17 8 10.2970 -0.5681 5.6564 18 6 9.2107 -0.3797 4.7235 19 7 7.6915 -0.8069 1.3611 20 7 6.4337 -0.9885 1.1542 21 7 2.0183 -0.6906 -1.1962 22 6 2.1490 -0.0073 -2.3758 23 1 1.8926 1.0406 -2.4241 24 6 2.6112 -0.6617 -3.5094 25 7 2.7374 -0.0049 -4.6430 26 14 3.0555 -2.4742 -3.4256 27 1 1.8581 -3.2925 -3.7446 28 1 4.1306 -2.7663 -4.4076 29 1 3.5310 -2.8046 -2.0581 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7517 -0.1585 2.1369 34 1 1.6054 -1.7199 1.2950 35 1 4.3723 -1.7572 -0.4745 36 1 5.0361 -2.2519 1.1013 37 1 3.4345 -2.8343 0.5877 38 1 6.3692 1.7584 2.8773 39 1 9.7046 1.2589 1.7113 40 1 8.9129 1.8043 3.2093 41 1 12.0759 -0.2151 3.3749 42 1 11.4230 1.4538 3.3825 43 1 12.2613 0.1464 5.6849 44 1 10.9879 1.4047 5.6851 45 1 8.6003 0.4735 5.0191 46 1 8.6009 -1.2812 4.6640 47 1 2.2490 -1.6317 -1.1528 48 1 3.0607 -0.4621 -5.4350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755611266.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:48 Heat of formation + Delta-G solvation = 48.623567 kcal Electronic energy + Delta-G solvation = -29815.074351 eV Core-core repulsion = 25715.710366 eV Total energy + Delta-G solvation = -4099.363985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32703 -40.02740 -39.29903 -36.39604 -35.65959 -34.25974 -32.67376 -32.01304 -30.92650 -29.92536 -29.36796 -27.24666 -26.62646 -25.80651 -23.64403 -23.47748 -22.65188 -22.31432 -21.09218 -20.22280 -19.39366 -17.85064 -17.54556 -16.94339 -16.56709 -16.21752 -15.99303 -15.88313 -15.67805 -15.08712 -14.79319 -14.52022 -14.29759 -13.81635 -13.76438 -13.54152 -13.23132 -13.03559 -12.62561 -12.52293 -12.41940 -12.23885 -12.15104 -12.04787 -11.96741 -11.74815 -11.56930 -11.38293 -11.23090 -10.90187 -10.75138 -10.60997 -10.50705 -10.43152 -10.34299 -9.93069 -9.78441 -9.49680 -9.30823 -8.87943 -8.18368 -7.16668 -5.69261 -3.03517 1.04472 1.78742 1.81803 3.25220 3.34916 3.41418 3.43312 3.49928 3.50795 3.77109 3.90649 4.16419 4.21221 4.30449 4.46152 4.59185 4.65327 4.65997 4.72851 4.79909 4.90150 5.05056 5.16194 5.21786 5.22676 5.29033 5.36335 5.49761 5.53517 5.57429 5.63323 5.63520 5.78240 6.03623 6.15511 6.19194 6.21504 6.26189 6.28183 6.47735 6.53310 6.80973 6.86550 7.12574 7.64815 7.91157 8.07931 8.41734 8.49481 9.28615 10.00896 10.21242 11.49532 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.002757 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.146883 B =10151.786935 C =11006.303632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.109 3.891 5 N -0.581 5.581 6 C 0.071 3.929 7 C 0.601 3.399 8 O -0.547 6.547 9 C -0.086 4.086 10 C 0.089 3.911 11 N -0.364 5.364 12 C 0.131 3.869 13 C -0.137 4.137 14 H 0.105 0.895 15 C -0.147 4.147 16 C 0.042 3.958 17 O -0.371 6.371 18 C 0.050 3.950 19 N -0.069 5.069 20 N -0.196 5.196 21 N -0.744 5.744 22 C -0.233 4.233 23 H 0.088 0.912 24 C 0.001 3.999 25 N -0.937 5.937 26 Si 0.879 3.121 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.270 1.270 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.203 0.797 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.359 0.641 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.037 0.858 21.775 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 H 0.078 0.922 4 C -0.015 4.015 5 N -0.310 5.310 6 C -0.072 4.072 7 C 0.387 3.613 8 O -0.424 6.424 9 C -0.225 4.225 10 C -0.068 4.068 11 N -0.150 5.150 12 C 0.010 3.990 13 C -0.157 4.157 14 H 0.123 0.877 15 C -0.185 4.185 16 C -0.035 4.035 17 O -0.290 6.290 18 C -0.027 4.027 19 N -0.049 5.049 20 N -0.069 5.069 21 N -0.387 5.387 22 C -0.363 4.363 23 H 0.106 0.894 24 C -0.194 4.194 25 N -0.586 5.586 26 Si 0.710 3.290 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.196 1.196 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.220 0.780 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.192 0.808 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.538 0.240 21.335 26.995 hybrid contribution -0.048 -0.267 -0.115 0.295 sum 16.490 -0.027 21.220 26.874 Atomic orbital electron populations 1.22340 0.98299 1.00838 1.00776 1.20619 0.92114 0.96601 0.85713 0.92154 1.21985 0.78298 1.01369 0.99806 1.47397 1.06629 1.21185 1.55802 1.22369 0.98504 0.86431 0.99917 1.16707 0.83391 0.82918 0.78272 1.90768 1.73494 1.28883 1.49292 1.21514 0.96243 0.96560 1.08212 1.23315 0.83662 1.00105 0.99678 1.50462 1.06735 1.19919 1.37857 1.22120 0.81111 0.95703 1.00066 1.22916 0.95073 1.00156 0.97547 0.87698 1.22960 0.96237 1.02646 0.96680 1.23464 0.93652 0.92616 0.93722 1.89180 1.29715 1.55328 1.54773 1.23501 0.90190 1.02373 0.86626 1.81993 1.11336 0.99678 1.11849 1.74830 0.98326 1.19665 1.14097 1.42732 1.79706 1.09250 1.07036 1.19055 1.36308 0.95494 0.85459 0.89446 1.24649 1.01708 0.97414 0.95591 1.69704 1.53158 1.35457 1.00264 0.86672 0.77998 0.87021 0.77348 1.21402 1.21962 1.19564 0.92110 0.93588 0.93979 0.89708 0.90785 0.90934 0.89119 0.92052 0.78021 0.87812 0.87520 0.89632 0.89757 0.88739 0.91975 0.92008 0.88843 0.80806 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.49 37.16 0.35 -2.51 16 2 C 0.16 3.20 3.20 -67.93 -0.22 2.98 16 3 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 4 C 0.11 1.80 5.04 -4.04 -0.02 1.78 16 5 N -0.58 -10.14 2.73 -182.82 -0.50 -10.64 16 6 C 0.07 1.20 8.12 59.84 0.49 1.69 16 7 C 0.60 10.62 7.66 -12.48 -0.10 10.53 16 8 O -0.55 -10.49 16.49 5.28 0.09 -10.41 16 9 C -0.09 -1.32 6.70 -83.55 -0.56 -1.88 16 10 C 0.09 0.99 11.28 -16.83 -0.19 0.80 16 11 N -0.36 -3.65 3.58 -61.06 -0.22 -3.86 16 12 C 0.13 0.72 5.69 -4.04 -0.02 0.69 16 13 C -0.14 -0.80 3.24 -89.05 -0.29 -1.08 16 14 H 0.10 0.78 8.06 -51.93 -0.42 0.37 16 15 C -0.15 -0.57 6.74 -25.16 -0.17 -0.74 16 16 C 0.04 0.21 7.63 37.94 0.29 0.50 16 17 O -0.37 -3.18 11.65 -35.23 -0.41 -3.59 16 18 C 0.05 0.36 7.08 37.93 0.27 0.63 16 19 N -0.07 -0.95 13.58 60.35 0.82 -0.13 16 20 N -0.20 -3.10 8.79 32.84 0.29 -2.81 16 21 N -0.74 -17.61 4.28 -53.42 -0.23 -17.84 16 22 C -0.23 -6.67 10.41 -15.06 -0.16 -6.83 16 23 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 24 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 25 N -0.94 -30.07 13.97 55.49 0.78 -29.29 16 26 Si 0.88 22.22 27.73 -169.99 -4.71 17.51 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 29 H -0.27 -6.16 5.23 56.52 0.30 -5.86 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.32 7.48 -51.93 -0.39 0.93 16 34 H 0.07 1.08 7.86 -51.93 -0.41 0.67 16 35 H 0.07 1.47 6.57 -51.92 -0.34 1.13 16 36 H 0.09 1.43 5.25 -51.92 -0.27 1.16 16 37 H 0.06 0.92 7.83 -51.93 -0.41 0.52 16 38 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 0.29 7.90 -51.93 -0.41 -0.12 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.17 7.73 -51.93 -0.40 -0.23 16 43 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.37 7.74 -51.93 -0.40 -0.03 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.36 8.23 4.25 -40.82 -0.17 8.06 16 48 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 388.34 15.07 5.85 5.85 Total: -1.00 -36.65 388.34 -6.18 -42.83 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.51 Total: 5.89 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -0.42 Total: 6.50 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 0.94 Total: -64.58 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.32 Total: -14.00 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.65 -6.18 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755611266.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.454 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds