Wall clock time and date at job start Tue Mar 31 2020 19:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47449 * 2 1 4 4 C 1.52998 * 109.47429 * 120.00553 * 2 1 3 5 5 N 1.46500 * 109.47319 * 174.99572 * 4 2 1 6 6 C 1.46491 * 120.00075 * 269.99864 * 5 4 2 7 7 C 1.34781 * 119.99653 * 89.99903 * 5 4 2 8 8 O 1.21594 * 120.00029 * 356.19123 * 7 5 4 9 9 C 1.47519 * 119.99880 * 176.18583 * 7 5 4 10 10 C 1.36593 * 125.77055 * 185.90216 * 9 7 5 11 11 N 1.34823 * 106.84022 * 179.89928 * 10 9 7 12 12 C 1.46492 * 126.59366 * 180.10862 * 11 10 9 13 13 C 1.53006 * 109.47263 * 125.27346 * 12 11 10 14 14 H 1.08999 * 110.45317 * 52.39537 * 13 12 11 15 15 C 1.54509 * 110.51014 * 174.99744 * 13 12 11 16 16 C 1.54485 * 104.06193 * 118.64672 * 15 13 12 17 17 O 1.44430 * 104.80095 * 23.97743 * 16 15 13 18 18 C 1.44423 * 105.27575 * 319.48735 * 17 16 15 19 19 N 1.40201 * 106.80808 * 0.35573 * 11 10 9 20 20 N 1.28762 * 108.37110 * 359.77225 * 19 11 10 21 21 N 1.46503 * 109.47097 * 240.00304 * 2 1 3 22 22 C 1.36941 * 119.99661 * 84.99821 * 21 2 1 23 23 H 1.07994 * 120.00198 * 0.02562 * 22 21 2 24 24 C 1.38816 * 119.99670 * 180.02562 * 22 21 2 25 25 N 1.31619 * 119.99638 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 120.00001 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46794 * 90.00900 * 26 24 22 28 28 H 1.48507 * 109.47438 * 210.00275 * 26 24 22 29 29 H 1.48498 * 109.47521 * 330.00779 * 26 24 22 30 30 H 1.09000 * 109.47114 * 59.99731 * 1 2 3 31 31 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46663 * 299.99803 * 1 2 3 33 33 H 1.09000 * 109.47023 * 294.99740 * 4 2 1 34 34 H 1.08997 * 109.47061 * 54.99888 * 4 2 1 35 35 H 1.09008 * 109.47228 * 95.72240 * 6 5 4 36 36 H 1.09008 * 109.47271 * 215.72049 * 6 5 4 37 37 H 1.08997 * 109.47584 * 335.72334 * 6 5 4 38 38 H 1.08002 * 126.58294 * 0.03786 * 10 9 7 39 39 H 1.09004 * 109.47464 * 245.27340 * 12 11 10 40 40 H 1.09006 * 109.47493 * 5.27252 * 12 11 10 41 41 H 1.09003 * 110.50635 * 237.28972 * 15 13 12 42 42 H 1.08993 * 110.51416 * 0.02562 * 15 13 12 43 43 H 1.08995 * 110.37183 * 142.80439 * 16 15 13 44 44 H 1.08994 * 110.36832 * 265.14733 * 16 15 13 45 45 H 1.09000 * 110.37450 * 281.68792 * 18 17 16 46 46 H 1.09000 * 110.37426 * 159.34461 * 18 17 16 47 47 H 0.96997 * 120.00321 * 264.99977 * 21 2 1 48 48 H 0.97001 * 119.99674 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1257 -1.9920 0.5610 7 6 4.2676 0.1490 1.7155 8 8 3.7501 1.1485 2.1757 9 6 5.7356 0.0042 1.7319 10 6 6.6156 0.8595 2.3317 11 7 7.8508 0.3647 2.1146 12 6 9.1163 0.9431 2.5729 13 6 9.8980 -0.1050 3.3676 14 1 9.9941 -1.0257 2.7921 15 6 11.2912 0.4384 3.7561 16 6 11.2809 0.4277 5.3009 17 8 10.2970 -0.5681 5.6564 18 6 9.2107 -0.3797 4.7235 19 7 7.6915 -0.8069 1.3611 20 7 6.4337 -0.9885 1.1542 21 7 2.0183 -0.6906 -1.1962 22 6 2.1490 -0.0073 -2.3758 23 1 1.8926 1.0406 -2.4241 24 6 2.6112 -0.6617 -3.5094 25 7 2.7374 -0.0049 -4.6430 26 14 3.0555 -2.4742 -3.4256 27 1 1.8581 -3.2925 -3.7446 28 1 4.1306 -2.7663 -4.4076 29 1 3.5310 -2.8046 -2.0581 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7517 -0.1585 2.1369 34 1 1.6054 -1.7199 1.2950 35 1 4.3723 -1.7572 -0.4745 36 1 5.0361 -2.2519 1.1013 37 1 3.4345 -2.8343 0.5877 38 1 6.3692 1.7584 2.8773 39 1 9.7046 1.2589 1.7113 40 1 8.9129 1.8043 3.2093 41 1 12.0759 -0.2151 3.3749 42 1 11.4230 1.4538 3.3825 43 1 12.2613 0.1464 5.6849 44 1 10.9879 1.4047 5.6851 45 1 8.6003 0.4735 5.0191 46 1 8.6009 -1.2812 4.6640 47 1 2.2490 -1.6317 -1.1528 48 1 3.0607 -0.4621 -5.4350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755611266.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:47 Heat of formation + Delta-G solvation = 21.214450 kcal Electronic energy + Delta-G solvation = -29816.262900 eV Core-core repulsion = 25715.710366 eV Total energy + Delta-G solvation = -4100.552534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.29346 -40.75145 -40.39569 -37.99417 -36.43513 -35.78395 -34.04852 -33.31825 -32.03280 -31.26472 -30.35786 -28.33695 -27.61570 -27.02639 -25.44521 -24.23192 -23.80450 -23.07654 -21.94230 -21.56517 -20.57905 -19.67513 -18.73811 -17.68428 -17.48161 -17.31164 -16.92915 -16.68294 -16.53831 -16.36861 -16.15356 -15.64461 -15.44937 -15.24181 -14.95672 -14.75894 -14.28166 -14.08743 -13.92206 -13.77849 -13.73832 -13.57806 -13.26706 -13.00011 -12.94059 -12.83097 -12.69056 -12.43818 -12.39724 -12.23644 -12.21650 -11.89497 -11.74032 -11.65017 -11.59920 -11.26877 -11.11457 -10.97420 -10.83050 -10.34089 -9.64126 -9.20639 -7.99724 -5.31454 0.14276 0.63563 1.07628 1.37424 1.42347 1.49187 2.02117 2.25186 2.51079 2.90706 3.14902 3.25725 3.32596 3.46410 3.60735 3.68961 3.74209 3.89687 3.96659 4.07171 4.10665 4.19469 4.23760 4.29205 4.37338 4.40418 4.45657 4.58337 4.64703 4.67816 4.74611 4.79318 4.81451 4.86589 4.91992 5.01149 5.03199 5.10746 5.17432 5.27234 5.42468 5.45285 5.67870 5.77722 5.79234 6.22505 6.33885 6.85523 7.11170 7.13234 7.86607 8.08469 9.22495 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.002757 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.146883 B =10151.786935 C =11006.303632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.025 0.975 4 C 0.114 3.886 5 N -0.588 5.588 6 C 0.076 3.924 7 C 0.596 3.404 8 O -0.570 6.570 9 C -0.123 4.123 10 C 0.111 3.889 11 N -0.347 5.347 12 C 0.121 3.879 13 C -0.131 4.131 14 H 0.082 0.918 15 C -0.138 4.138 16 C 0.035 3.965 17 O -0.403 6.403 18 C 0.048 3.952 19 N -0.089 5.089 20 N -0.223 5.223 21 N -0.741 5.741 22 C -0.217 4.217 23 H 0.045 0.955 24 C -0.068 4.068 25 N -0.990 5.990 26 Si 0.948 3.052 27 H -0.279 1.279 28 H -0.304 1.304 29 H -0.233 1.233 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.036 0.964 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.238 0.762 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.367 0.633 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.142 0.404 24.325 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.046 3.954 3 H 0.043 0.957 4 C -0.009 4.009 5 N -0.317 5.317 6 C -0.067 4.067 7 C 0.383 3.617 8 O -0.450 6.450 9 C -0.262 4.262 10 C -0.047 4.047 11 N -0.131 5.131 12 C 0.003 3.997 13 C -0.151 4.151 14 H 0.101 0.899 15 C -0.176 4.176 16 C -0.041 4.041 17 O -0.322 6.322 18 C -0.029 4.029 19 N -0.069 5.069 20 N -0.096 5.096 21 N -0.386 5.386 22 C -0.348 4.348 23 H 0.063 0.937 24 C -0.259 4.259 25 N -0.641 5.641 26 Si 0.775 3.225 27 H -0.206 1.206 28 H -0.231 1.231 29 H -0.157 1.157 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.254 0.746 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.201 0.799 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.660 -0.229 23.950 29.758 hybrid contribution -0.308 0.051 -0.806 0.864 sum 17.352 -0.179 23.145 28.927 Atomic orbital electron populations 1.22186 0.96060 1.02048 1.00937 1.20796 0.93653 0.94967 0.85991 0.95718 1.21982 0.78169 1.02748 0.97992 1.47533 1.06986 1.21429 1.55786 1.22309 0.99752 0.86775 0.97833 1.17089 0.84516 0.82470 0.77630 1.90736 1.74278 1.29577 1.50381 1.21472 0.95599 0.98365 1.10770 1.23789 0.83146 0.99872 0.97879 1.50744 1.07916 1.18498 1.35976 1.22662 0.79343 0.96387 1.01346 1.22802 0.96256 0.99552 0.96487 0.89916 1.22946 0.94686 1.04100 0.95908 1.23697 0.93278 0.92608 0.94494 1.89148 1.30763 1.56844 1.55477 1.23517 0.90140 1.01932 0.87308 1.81894 1.10542 1.01470 1.12946 1.74761 0.99104 1.20656 1.15064 1.42636 1.79923 1.09450 1.06552 1.18922 1.34579 0.93944 0.87402 0.93703 1.25488 1.02555 1.02785 0.95073 1.69905 1.55238 1.37766 1.01232 0.85564 0.77489 0.80551 0.78923 1.20562 1.23102 1.15681 0.95003 0.91779 0.90796 0.88297 0.87722 0.94487 0.88101 0.89802 0.74564 0.86121 0.83600 0.89716 0.87012 0.88084 0.90339 0.90521 0.91049 0.79933 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.49 71.98 0.68 -4.48 16 2 C 0.15 6.11 3.20 44.99 0.14 6.26 16 3 H 0.02 1.15 8.08 -2.39 -0.02 1.13 16 4 C 0.11 3.54 5.04 86.38 0.44 3.98 16 5 N -0.59 -19.84 2.73 -850.57 -2.32 -22.16 16 6 C 0.08 2.47 8.12 127.77 1.04 3.51 16 7 C 0.60 20.65 7.66 86.69 0.66 21.32 16 8 O -0.57 -21.51 16.49 -4.01 -0.07 -21.58 16 9 C -0.12 -3.65 6.70 40.81 0.27 -3.37 16 10 C 0.11 2.24 11.28 83.85 0.95 3.18 16 11 N -0.35 -6.17 3.58 -347.09 -1.24 -7.42 16 12 C 0.12 0.91 5.69 86.38 0.49 1.41 16 13 C -0.13 -1.25 3.24 -9.78 -0.03 -1.28 16 14 H 0.08 1.18 8.06 -2.39 -0.02 1.16 16 15 C -0.14 -0.68 6.74 31.61 0.21 -0.47 16 16 C 0.04 0.27 7.63 72.49 0.55 0.82 16 17 O -0.40 -6.45 11.65 -148.98 -1.74 -8.19 16 18 C 0.05 0.62 7.08 72.49 0.51 1.13 16 19 N -0.09 -2.37 13.58 37.02 0.50 -1.87 16 20 N -0.22 -6.97 8.79 -50.00 -0.44 -7.41 16 21 N -0.74 -34.90 4.28 -322.94 -1.38 -36.28 16 22 C -0.22 -12.80 10.41 84.03 0.87 -11.93 16 23 H 0.04 2.97 8.06 -2.91 -0.02 2.95 16 24 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 25 N -0.99 -65.87 13.97 21.65 0.30 -65.56 16 26 Si 0.95 46.22 27.73 68.60 1.90 48.12 16 27 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 28 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 29 H -0.23 -9.84 5.23 99.48 0.52 -9.32 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.10 2.84 7.48 -2.39 -0.02 2.82 16 34 H 0.10 2.64 7.86 -2.39 -0.02 2.62 16 35 H 0.04 1.46 6.57 -2.38 -0.02 1.44 16 36 H 0.10 3.08 5.25 -2.38 -0.01 3.07 16 37 H 0.08 2.27 7.83 -2.39 -0.02 2.25 16 38 H 0.24 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.15 0.04 7.90 -2.38 -0.02 0.02 16 41 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.11 -0.04 7.73 -2.39 -0.02 -0.06 16 43 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 0.33 8.14 -2.39 -0.02 0.32 16 45 H 0.08 0.73 7.74 -2.39 -0.02 0.71 16 46 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.37 16.17 4.25 -92.71 -0.39 15.77 16 48 H 0.25 16.19 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -85.15 388.34 3.17 -81.97 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.39 Total: 24.01 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 7.26 Total: 16.37 kcal Atomic # 7 Polarization: -136.12 SS G_CDS: -4.58 Total: -140.70 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.80 Total: -29.77 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.12 kcal Total: -85.15 3.17 -81.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755611266.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.188 kcal (2) G-P(sol) polarization free energy of solvation -85.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds