Wall clock time and date at job start Tue Mar 31 2020 19:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46512 * 2 1 4 4 C 1.52996 * 109.46839 * 119.99929 * 2 1 3 5 5 N 1.46505 * 109.46740 * 175.00392 * 4 2 1 6 6 C 1.46497 * 120.00362 * 89.99941 * 5 4 2 7 7 C 1.34773 * 119.99771 * 269.99889 * 5 4 2 8 8 O 1.21596 * 120.00204 * 4.99088 * 7 5 4 9 9 C 1.47533 * 119.99843 * 184.99445 * 7 5 4 10 10 C 1.36595 * 125.76649 * 186.25497 * 9 7 5 11 11 N 1.34813 * 106.83458 * 179.97438 * 10 9 7 12 12 C 1.46503 * 126.59045 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47234 * 125.00057 * 12 11 10 14 14 H 1.08998 * 110.43485 * 305.69487 * 13 12 11 15 15 C 1.54811 * 110.49092 * 183.15548 * 13 12 11 16 16 C 1.55223 * 101.98771 * 220.51864 * 15 13 12 17 17 O 1.44378 * 103.56788 * 36.87625 * 16 15 13 18 18 C 1.43744 * 106.97692 * 320.01458 * 17 16 15 19 19 N 1.40197 * 106.81490 * 359.97438 * 11 10 9 20 20 N 1.28768 * 108.36793 * 359.75240 * 19 11 10 21 21 N 1.46494 * 109.47221 * 240.00102 * 2 1 3 22 22 C 1.36937 * 120.00278 * 85.00129 * 21 2 1 23 23 H 1.08007 * 119.99729 * 359.97438 * 22 21 2 24 24 C 1.38809 * 120.00523 * 179.97438 * 22 21 2 25 25 N 1.31616 * 119.99923 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00374 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46720 * 90.00207 * 26 24 22 28 28 H 1.48501 * 109.47282 * 209.99989 * 26 24 22 29 29 H 1.48496 * 109.47254 * 330.00394 * 26 24 22 30 30 H 1.08997 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47214 * 59.99875 * 1 2 3 32 32 H 1.08999 * 109.47130 * 300.00168 * 1 2 3 33 33 H 1.09004 * 109.47318 * 294.99472 * 4 2 1 34 34 H 1.08992 * 109.47390 * 55.00395 * 4 2 1 35 35 H 1.09001 * 109.47047 * 95.32168 * 6 5 4 36 36 H 1.08998 * 109.47350 * 215.32238 * 6 5 4 37 37 H 1.09000 * 109.46991 * 335.32972 * 6 5 4 38 38 H 1.07996 * 126.58512 * 359.95328 * 10 9 7 39 39 H 1.09002 * 109.47025 * 244.99716 * 12 11 10 40 40 H 1.09001 * 109.47505 * 4.99263 * 12 11 10 41 41 H 1.09004 * 110.90256 * 338.63797 * 15 13 12 42 42 H 1.08995 * 110.91063 * 102.23630 * 15 13 12 43 43 H 1.09004 * 110.51971 * 278.38020 * 16 15 13 44 44 H 1.09003 * 110.77926 * 155.49875 * 16 15 13 45 45 H 1.09000 * 109.87901 * 267.09378 * 18 17 16 46 46 H 1.08999 * 110.00857 * 146.00795 * 18 17 16 47 47 H 0.96997 * 120.00018 * 264.99387 * 21 2 1 48 48 H 0.97003 * 120.00876 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.3343 0.2342 1.7613 7 6 4.0757 -1.8985 0.6116 8 8 3.3868 -2.7337 0.0581 9 6 5.5418 -2.0589 0.6495 10 6 6.2559 -3.0276 0.0033 11 7 7.5545 -2.8179 0.2987 12 6 8.6953 -3.6093 -0.1689 13 6 9.7078 -2.6893 -0.8539 14 1 9.2252 -2.1132 -1.6434 15 6 10.8868 -3.5125 -1.4274 16 6 12.1046 -2.6127 -1.0858 17 8 11.7674 -2.0623 0.2057 18 6 10.3648 -1.7491 0.1752 19 7 7.6033 -1.6969 1.1392 20 7 6.4011 -1.2726 1.3200 21 7 2.0184 -0.6906 -1.1961 22 6 2.1492 -0.0075 -2.3757 23 1 1.8919 1.0404 -2.4243 24 6 2.6124 -0.6616 -3.5090 25 7 2.9264 -1.9384 -3.4497 26 14 2.7902 0.2701 -5.1183 27 1 4.1521 0.8561 -5.2030 28 1 2.5806 -0.6616 -6.2555 29 1 1.7795 1.3565 -5.1756 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -0.1582 2.1370 34 1 1.6054 -1.7197 1.2951 35 1 4.6208 -0.0363 2.7776 36 1 5.2297 0.3593 1.1525 37 1 3.7730 1.1684 1.7785 38 1 5.8569 -3.8114 -0.6235 39 1 9.1685 -4.1017 0.6807 40 1 8.3496 -4.3613 -0.8782 41 1 10.9654 -4.4786 -0.9288 42 1 10.7845 -3.6398 -2.5050 43 1 12.2124 -1.8189 -1.8250 44 1 13.0177 -3.2048 -1.0242 45 1 10.2232 -0.7116 -0.1273 46 1 9.9250 -1.9114 1.1592 47 1 2.2491 -1.6317 -1.1526 48 1 3.2505 -2.3956 -4.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755611267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:50 Heat of formation + Delta-G solvation = 47.368205 kcal Electronic energy + Delta-G solvation = -30242.797296 eV Core-core repulsion = 26143.378874 eV Total energy + Delta-G solvation = -4099.418422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08061 -39.76744 -39.03743 -35.84445 -35.41762 -34.21449 -32.45003 -31.86500 -30.72521 -29.62424 -28.54060 -27.05752 -26.56166 -25.59335 -23.59151 -23.17735 -22.57393 -22.01979 -20.98897 -20.01798 -19.09786 -17.55317 -17.03930 -16.79784 -16.54284 -15.83060 -15.73856 -15.68385 -15.23048 -14.88545 -14.47107 -14.37995 -14.02912 -13.68864 -13.50507 -13.34620 -13.06161 -12.75582 -12.46457 -12.31011 -12.20277 -12.07253 -11.89238 -11.83367 -11.74066 -11.45199 -11.31807 -11.22823 -11.17282 -10.80397 -10.71666 -10.58662 -10.29299 -10.20539 -9.97023 -9.93452 -9.54805 -9.32636 -9.01076 -8.77957 -7.94797 -6.74071 -5.57322 -2.85345 1.30222 2.04603 2.05980 3.46383 3.48082 3.53357 3.54735 3.61094 3.90782 3.98458 4.04115 4.29479 4.49325 4.60461 4.70000 4.77149 4.79678 4.85840 4.95651 5.18469 5.21797 5.31794 5.35844 5.45701 5.48804 5.52735 5.63389 5.64870 5.68741 5.74875 5.76617 5.91347 6.04571 6.11238 6.17425 6.35984 6.36982 6.44329 6.49854 6.56074 6.78061 6.90545 7.06630 7.25175 7.82172 7.90631 8.12754 8.59411 8.81165 9.72776 10.37726 10.78382 11.63164 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.003436 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.354721 B = 8147.909756 C = 9737.837795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.043 0.957 4 C 0.112 3.888 5 N -0.595 5.595 6 C 0.091 3.909 7 C 0.606 3.394 8 O -0.510 6.510 9 C -0.082 4.082 10 C 0.100 3.900 11 N -0.367 5.367 12 C 0.133 3.867 13 C -0.138 4.138 14 H 0.095 0.905 15 C -0.147 4.147 16 C 0.046 3.954 17 O -0.379 6.379 18 C 0.053 3.947 19 N -0.081 5.081 20 N -0.202 5.202 21 N -0.721 5.721 22 C -0.232 4.232 23 H 0.064 0.936 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.896 3.104 27 H -0.294 1.294 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.205 0.795 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.400 0.600 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.507 -3.985 9.605 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 H 0.061 0.939 4 C -0.011 4.011 5 N -0.327 5.327 6 C -0.053 4.053 7 C 0.391 3.609 8 O -0.384 6.384 9 C -0.221 4.221 10 C -0.056 4.056 11 N -0.153 5.153 12 C 0.011 3.989 13 C -0.158 4.158 14 H 0.113 0.887 15 C -0.185 4.185 16 C -0.031 4.031 17 O -0.298 6.298 18 C -0.024 4.024 19 N -0.061 5.061 20 N -0.076 5.076 21 N -0.368 5.368 22 C -0.364 4.364 23 H 0.082 0.918 24 C -0.210 4.210 25 N -0.570 5.570 26 Si 0.728 3.272 27 H -0.222 1.222 28 H -0.220 1.220 29 H -0.209 1.209 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.222 0.778 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.240 0.760 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 15.222 -3.401 10.141 18.605 hybrid contribution -0.552 -0.343 -2.004 2.106 sum 14.670 -3.744 8.137 17.189 Atomic orbital electron populations 1.22410 0.99143 1.00951 0.99898 1.20660 0.91973 0.95635 0.87585 0.93897 1.21878 0.78819 1.02084 0.98330 1.47312 1.06712 1.20623 1.58067 1.21844 0.95455 0.89642 0.98352 1.16609 0.84007 0.82054 0.78243 1.90793 1.62428 1.43233 1.41900 1.21534 0.96168 0.98206 1.06234 1.23438 0.83114 1.00578 0.98430 1.50391 1.06450 1.23462 1.34986 1.22074 0.84194 0.92336 1.00248 1.22902 0.96236 0.97503 0.99130 0.88708 1.23195 0.93589 0.99453 1.02258 1.23582 0.97803 0.95842 0.85857 1.88895 1.24655 1.83375 1.32850 1.23330 0.80661 0.97974 1.00421 1.81811 1.14943 0.98400 1.10944 1.74762 0.96638 1.20172 1.16053 1.42801 1.77521 1.11921 1.04530 1.19223 1.35865 0.93583 0.87736 0.91840 1.24684 1.02861 0.95907 0.97547 1.69754 1.50963 1.08299 1.27983 0.86346 0.77561 0.78699 0.84563 1.22220 1.21957 1.20925 0.93362 0.92710 0.94610 0.90883 0.90319 0.93041 0.90138 0.91921 0.77834 0.88163 0.87273 0.89827 0.89394 0.92051 0.88754 0.91897 0.88135 0.76001 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.49 37.16 0.35 -2.70 16 2 C 0.15 3.19 3.20 -67.93 -0.22 2.97 16 3 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 4 C 0.11 1.98 5.11 -4.04 -0.02 1.96 16 5 N -0.59 -10.91 2.77 -182.81 -0.51 -11.42 16 6 C 0.09 1.39 9.28 59.85 0.56 1.94 16 7 C 0.61 12.35 7.07 -12.47 -0.09 12.27 16 8 O -0.51 -12.05 13.93 5.28 0.07 -11.98 16 9 C -0.08 -1.46 6.63 -83.55 -0.55 -2.01 16 10 C 0.10 1.49 11.28 -16.84 -0.19 1.30 16 11 N -0.37 -4.57 3.69 -61.06 -0.23 -4.80 16 12 C 0.13 1.08 5.70 -4.04 -0.02 1.05 16 13 C -0.14 -1.17 3.27 -89.09 -0.29 -1.46 16 14 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 15 C -0.15 -0.90 6.73 -24.60 -0.17 -1.07 16 16 C 0.05 0.34 7.72 38.33 0.30 0.63 16 17 O -0.38 -4.08 11.52 -35.23 -0.41 -4.49 16 18 C 0.05 0.55 6.60 37.73 0.25 0.80 16 19 N -0.08 -1.20 11.63 60.35 0.70 -0.49 16 20 N -0.20 -3.34 9.03 32.85 0.30 -3.04 16 21 N -0.72 -19.07 4.52 -53.43 -0.24 -19.31 16 22 C -0.23 -6.71 9.93 -15.06 -0.15 -6.86 16 23 H 0.06 1.79 7.83 -52.48 -0.41 1.38 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 25 N -0.92 -28.58 13.06 55.49 0.72 -27.85 16 26 Si 0.90 23.03 29.55 -169.99 -5.02 18.00 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.08 1.47 7.49 -51.93 -0.39 1.08 16 35 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.08 1.35 5.87 -51.93 -0.30 1.04 16 37 H 0.06 0.85 8.03 -51.93 -0.42 0.43 16 38 H 0.20 2.69 8.06 -52.49 -0.42 2.27 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.10 1.12 6.37 -51.93 -0.33 0.79 16 47 H 0.40 11.40 4.80 -40.82 -0.20 11.20 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -36.27 388.83 -6.59 -42.86 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.50 Total: 8.35 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.34 Total: 8.31 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: 0.75 Total: -66.91 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.33 Total: -16.47 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.27 -6.59 -42.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755611267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.228 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds