Wall clock time and date at job start Tue Mar 31 2020 19:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46512 * 2 1 4 4 C 1.52996 * 109.46839 * 119.99929 * 2 1 3 5 5 N 1.46505 * 109.46740 * 175.00392 * 4 2 1 6 6 C 1.46497 * 120.00362 * 89.99941 * 5 4 2 7 7 C 1.34773 * 119.99771 * 269.99889 * 5 4 2 8 8 O 1.21596 * 120.00204 * 4.99088 * 7 5 4 9 9 C 1.47533 * 119.99843 * 184.99445 * 7 5 4 10 10 C 1.36595 * 125.76649 * 186.25497 * 9 7 5 11 11 N 1.34813 * 106.83458 * 179.97438 * 10 9 7 12 12 C 1.46503 * 126.59045 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47234 * 125.00057 * 12 11 10 14 14 H 1.08998 * 110.43485 * 305.69487 * 13 12 11 15 15 C 1.54811 * 110.49092 * 183.15548 * 13 12 11 16 16 C 1.55223 * 101.98771 * 220.51864 * 15 13 12 17 17 O 1.44378 * 103.56788 * 36.87625 * 16 15 13 18 18 C 1.43744 * 106.97692 * 320.01458 * 17 16 15 19 19 N 1.40197 * 106.81490 * 359.97438 * 11 10 9 20 20 N 1.28768 * 108.36793 * 359.75240 * 19 11 10 21 21 N 1.46494 * 109.47221 * 240.00102 * 2 1 3 22 22 C 1.36937 * 120.00278 * 85.00129 * 21 2 1 23 23 H 1.08007 * 119.99729 * 359.97438 * 22 21 2 24 24 C 1.38809 * 120.00523 * 179.97438 * 22 21 2 25 25 N 1.31616 * 119.99923 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00374 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46720 * 90.00207 * 26 24 22 28 28 H 1.48501 * 109.47282 * 209.99989 * 26 24 22 29 29 H 1.48496 * 109.47254 * 330.00394 * 26 24 22 30 30 H 1.08997 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47214 * 59.99875 * 1 2 3 32 32 H 1.08999 * 109.47130 * 300.00168 * 1 2 3 33 33 H 1.09004 * 109.47318 * 294.99472 * 4 2 1 34 34 H 1.08992 * 109.47390 * 55.00395 * 4 2 1 35 35 H 1.09001 * 109.47047 * 95.32168 * 6 5 4 36 36 H 1.08998 * 109.47350 * 215.32238 * 6 5 4 37 37 H 1.09000 * 109.46991 * 335.32972 * 6 5 4 38 38 H 1.07996 * 126.58512 * 359.95328 * 10 9 7 39 39 H 1.09002 * 109.47025 * 244.99716 * 12 11 10 40 40 H 1.09001 * 109.47505 * 4.99263 * 12 11 10 41 41 H 1.09004 * 110.90256 * 338.63797 * 15 13 12 42 42 H 1.08995 * 110.91063 * 102.23630 * 15 13 12 43 43 H 1.09004 * 110.51971 * 278.38020 * 16 15 13 44 44 H 1.09003 * 110.77926 * 155.49875 * 16 15 13 45 45 H 1.09000 * 109.87901 * 267.09378 * 18 17 16 46 46 H 1.08999 * 110.00857 * 146.00795 * 18 17 16 47 47 H 0.96997 * 120.00018 * 264.99387 * 21 2 1 48 48 H 0.97003 * 120.00876 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.3343 0.2342 1.7613 7 6 4.0757 -1.8985 0.6116 8 8 3.3868 -2.7337 0.0581 9 6 5.5418 -2.0589 0.6495 10 6 6.2559 -3.0276 0.0033 11 7 7.5545 -2.8179 0.2987 12 6 8.6953 -3.6093 -0.1689 13 6 9.7078 -2.6893 -0.8539 14 1 9.2252 -2.1132 -1.6434 15 6 10.8868 -3.5125 -1.4274 16 6 12.1046 -2.6127 -1.0858 17 8 11.7674 -2.0623 0.2057 18 6 10.3648 -1.7491 0.1752 19 7 7.6033 -1.6969 1.1392 20 7 6.4011 -1.2726 1.3200 21 7 2.0184 -0.6906 -1.1961 22 6 2.1492 -0.0075 -2.3757 23 1 1.8919 1.0404 -2.4243 24 6 2.6124 -0.6616 -3.5090 25 7 2.9264 -1.9384 -3.4497 26 14 2.7902 0.2701 -5.1183 27 1 4.1521 0.8561 -5.2030 28 1 2.5806 -0.6616 -6.2555 29 1 1.7795 1.3565 -5.1756 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -0.1582 2.1370 34 1 1.6054 -1.7197 1.2951 35 1 4.6208 -0.0363 2.7776 36 1 5.2297 0.3593 1.1525 37 1 3.7730 1.1684 1.7785 38 1 5.8569 -3.8114 -0.6235 39 1 9.1685 -4.1017 0.6807 40 1 8.3496 -4.3613 -0.8782 41 1 10.9654 -4.4786 -0.9288 42 1 10.7845 -3.6398 -2.5050 43 1 12.2124 -1.8189 -1.8250 44 1 13.0177 -3.2048 -1.0242 45 1 10.2232 -0.7116 -0.1273 46 1 9.9250 -1.9114 1.1592 47 1 2.2491 -1.6317 -1.1526 48 1 3.2505 -2.3956 -4.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755611267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:49 Heat of formation + Delta-G solvation = 21.371414 kcal Electronic energy + Delta-G solvation = -30243.924602 eV Core-core repulsion = 26143.378874 eV Total energy + Delta-G solvation = -4100.545727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.24141 -40.66973 -40.34094 -37.50874 -36.41271 -35.81006 -33.87210 -33.28222 -31.90620 -30.60395 -30.26722 -28.27294 -27.57500 -26.95225 -25.65766 -24.06738 -23.80315 -22.91966 -21.86788 -21.48008 -20.47622 -19.30326 -18.46602 -17.60305 -17.41603 -17.22681 -17.06747 -16.77099 -16.56761 -16.11265 -15.88436 -15.68711 -15.49006 -14.93369 -14.79399 -14.49725 -14.19456 -13.99702 -13.74679 -13.71443 -13.52627 -13.49228 -13.09553 -13.00156 -12.82928 -12.75039 -12.68878 -12.43626 -12.37787 -12.20469 -12.11576 -11.93383 -11.84182 -11.75346 -11.54654 -11.22989 -10.97192 -10.85350 -10.69388 -10.26357 -9.41771 -8.83751 -7.79770 -5.07589 0.16000 0.73720 1.07576 1.43475 1.45034 1.53210 2.10252 2.47523 2.59747 2.93869 3.21026 3.23922 3.39327 3.48339 3.67056 3.73160 3.91924 4.00739 4.07415 4.13720 4.21757 4.24072 4.29203 4.42225 4.43689 4.48158 4.55821 4.62939 4.68666 4.76854 4.77616 4.82736 4.85086 4.89722 4.97005 4.97612 5.09101 5.14777 5.15344 5.31791 5.44102 5.51775 5.58553 5.80209 5.86061 6.39451 6.49023 6.90898 7.31688 7.48823 8.33380 8.60793 9.41583 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.003436 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.354721 B = 8147.909756 C = 9737.837795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 H 0.043 0.957 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.092 3.908 7 C 0.596 3.404 8 O -0.555 6.555 9 C -0.113 4.113 10 C 0.104 3.896 11 N -0.349 5.349 12 C 0.123 3.877 13 C -0.135 4.135 14 H 0.079 0.921 15 C -0.135 4.135 16 C 0.037 3.963 17 O -0.400 6.400 18 C 0.054 3.946 19 N -0.085 5.085 20 N -0.211 5.211 21 N -0.737 5.737 22 C -0.234 4.234 23 H 0.066 0.934 24 C -0.075 4.075 25 N -0.956 5.956 26 Si 0.961 3.039 27 H -0.293 1.293 28 H -0.296 1.296 29 H -0.273 1.273 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.217 0.783 39 H 0.122 0.878 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.114 0.886 45 H 0.045 0.955 46 H 0.090 0.910 47 H 0.389 0.611 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.330 -3.842 10.080 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 H 0.061 0.939 4 C -0.007 4.007 5 N -0.328 5.328 6 C -0.050 4.050 7 C 0.382 3.618 8 O -0.432 6.432 9 C -0.253 4.253 10 C -0.053 4.053 11 N -0.135 5.135 12 C 0.004 3.996 13 C -0.155 4.155 14 H 0.098 0.902 15 C -0.173 4.173 16 C -0.039 4.039 17 O -0.320 6.320 18 C -0.023 4.023 19 N -0.065 5.065 20 N -0.085 5.085 21 N -0.383 5.383 22 C -0.367 4.367 23 H 0.084 0.916 24 C -0.267 4.267 25 N -0.607 5.607 26 Si 0.791 3.209 27 H -0.221 1.221 28 H -0.223 1.223 29 H -0.198 1.198 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.234 0.766 39 H 0.140 0.860 40 H 0.158 0.842 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.079 0.921 44 H 0.132 0.868 45 H 0.063 0.937 46 H 0.109 0.891 47 H 0.227 0.773 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.059 -3.198 10.664 19.540 hybrid contribution -0.719 -0.349 -2.079 2.228 sum 15.340 -3.548 8.585 17.933 Atomic orbital electron populations 1.22238 0.97221 1.00726 1.01099 1.20977 0.93261 0.95391 0.87021 0.93921 1.21901 0.78559 1.01703 0.98509 1.47490 1.07269 1.20667 1.57361 1.21948 0.94717 0.89607 0.98761 1.17053 0.85029 0.82019 0.77673 1.90752 1.63637 1.44805 1.44000 1.21430 0.95409 1.00014 1.08403 1.23621 0.83759 1.00118 0.97817 1.50646 1.06779 1.22593 1.33458 1.22593 0.82889 0.92280 1.01851 1.22847 0.96932 0.97508 0.98163 0.90237 1.23198 0.91316 0.99507 1.03280 1.23832 0.99243 0.96316 0.84529 1.88871 1.24623 1.83723 1.34744 1.23233 0.81087 0.97608 1.00389 1.81734 1.14285 0.99182 1.11288 1.74739 0.96828 1.20431 1.16460 1.43037 1.77945 1.11683 1.05604 1.19573 1.34490 0.93747 0.88894 0.91643 1.25428 1.03695 0.96836 1.00762 1.69930 1.52508 1.09773 1.28440 0.85325 0.77504 0.77558 0.80513 1.22076 1.22264 1.19807 0.94295 0.94682 0.90141 0.86136 0.91646 0.91058 0.91794 0.89949 0.76598 0.85988 0.84163 0.87803 0.87880 0.92144 0.86780 0.93708 0.89141 0.77311 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.49 71.98 0.68 -4.80 16 2 C 0.14 5.85 3.20 44.99 0.14 5.99 16 3 H 0.04 1.74 8.08 -2.38 -0.02 1.72 16 4 C 0.12 3.96 5.11 86.38 0.44 4.40 16 5 N -0.60 -21.65 2.77 -850.56 -2.36 -24.01 16 6 C 0.09 2.71 9.28 127.77 1.19 3.90 16 7 C 0.60 24.82 7.07 86.70 0.61 25.43 16 8 O -0.55 -27.21 13.93 -4.02 -0.06 -27.27 16 9 C -0.11 -4.08 6.63 40.82 0.27 -3.81 16 10 C 0.10 3.08 11.28 83.85 0.95 4.03 16 11 N -0.35 -8.40 3.69 -347.09 -1.28 -9.68 16 12 C 0.12 1.72 5.70 86.38 0.49 2.21 16 13 C -0.13 -2.09 3.27 -9.80 -0.03 -2.13 16 14 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 15 C -0.14 -1.30 6.73 31.97 0.22 -1.08 16 16 C 0.04 0.48 7.72 72.74 0.56 1.04 16 17 O -0.40 -8.31 11.52 -148.98 -1.72 -10.03 16 18 C 0.05 1.10 6.60 72.35 0.48 1.58 16 19 N -0.08 -2.48 11.63 37.02 0.43 -2.05 16 20 N -0.21 -6.98 9.03 -49.99 -0.45 -7.43 16 21 N -0.74 -39.50 4.52 -322.94 -1.46 -40.96 16 22 C -0.23 -13.68 9.93 84.03 0.83 -12.84 16 23 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 24 C -0.07 -4.46 5.50 84.86 0.47 -4.00 16 25 N -0.96 -60.64 13.06 21.65 0.28 -60.35 16 26 Si 0.96 47.94 29.55 68.60 2.03 49.97 16 27 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 28 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 29 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.12 2.93 8.07 -2.38 -0.02 2.91 16 34 H 0.07 2.42 7.49 -2.39 -0.02 2.41 16 35 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 36 H 0.06 2.13 5.87 -2.39 -0.01 2.11 16 37 H 0.08 2.06 8.03 -2.39 -0.02 2.04 16 38 H 0.22 5.72 8.06 -2.91 -0.02 5.70 16 39 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.14 1.17 8.08 -2.39 -0.02 1.15 16 41 H 0.10 0.62 7.87 -2.38 -0.02 0.60 16 42 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 46 H 0.09 2.00 6.37 -2.39 -0.02 1.99 16 47 H 0.39 22.77 4.80 -92.71 -0.45 22.33 16 48 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -81.35 388.83 3.24 -78.11 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: 0.52 Total: 33.76 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 7.30 Total: 19.93 kcal Atomic # 7 Polarization: -139.63 SS G_CDS: -4.84 Total: -144.47 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.77 Total: -37.30 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -81.35 3.24 -78.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755611267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.485 kcal (2) G-P(sol) polarization free energy of solvation -81.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds