Wall clock time and date at job start Tue Mar 31 2020 19:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00297 * 2 1 4 4 C 1.52997 * 109.47330 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46946 * 183.83624 * 4 3 2 6 6 C 1.36744 * 127.13462 * 84.60484 * 5 4 3 7 7 C 1.50701 * 126.34976 * 0.05426 * 6 5 4 8 8 H 1.09003 * 109.46692 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.46738 * 240.00419 * 7 6 5 10 10 C 1.52993 * 109.47377 * 120.00231 * 7 6 5 11 11 C 1.50699 * 109.47233 * 185.00352 * 10 7 6 12 12 H 1.07999 * 119.99593 * 359.97438 * 11 10 7 13 13 C 1.37880 * 119.99949 * 180.02562 * 11 10 7 14 14 N 1.31507 * 119.99995 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99783 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47274 * 60.00147 * 15 13 11 17 17 H 1.48498 * 109.46973 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47386 * 299.99961 * 15 13 11 19 19 N 1.30298 * 107.30308 * 180.02562 * 6 5 4 20 20 N 1.28528 * 110.05266 * 359.73031 * 19 6 5 21 21 C 1.31219 * 109.86089 * 0.44532 * 20 19 6 22 22 N 1.38576 * 126.47222 * 179.82466 * 21 20 19 23 23 C 1.46913 * 110.99894 * 350.38492 * 22 21 20 24 24 C 1.52988 * 108.87302 * 54.32209 * 23 22 21 25 25 N 1.46006 * 109.95147 * 50.31375 * 24 23 22 26 26 C 1.33715 * 122.92687 * 341.87758 * 25 24 23 27 27 O 1.21278 * 118.62529 * 181.70793 * 26 25 24 28 28 C 1.46901 * 111.00222 * 113.23301 * 22 21 20 29 29 H 1.08994 * 109.47251 * 299.99814 * 1 2 3 30 30 H 1.08997 * 109.46618 * 60.00096 * 1 2 3 31 31 H 1.08999 * 109.46815 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46985 * 59.99751 * 3 2 1 33 33 H 1.09000 * 109.46740 * 300.00069 * 3 2 1 34 34 H 1.09005 * 109.47374 * 63.83318 * 4 3 2 35 35 H 1.09000 * 109.46836 * 303.83381 * 4 3 2 36 36 H 1.08994 * 109.47273 * 59.99881 * 9 7 6 37 37 H 1.09006 * 109.46408 * 180.02562 * 9 7 6 38 38 H 1.09003 * 109.47065 * 299.99203 * 9 7 6 39 39 H 1.09006 * 109.46921 * 304.99976 * 10 7 6 40 40 H 1.09000 * 109.47480 * 64.99503 * 10 7 6 41 41 H 0.97004 * 119.99938 * 180.02562 * 14 13 11 42 42 H 1.08995 * 109.45647 * 294.54657 * 23 22 21 43 43 H 1.09001 * 109.58881 * 174.17403 * 23 22 21 44 44 H 1.09002 * 109.37457 * 290.19142 * 24 23 22 45 45 H 1.09006 * 109.37214 * 170.43549 * 24 23 22 46 46 H 0.96997 * 118.53286 * 161.89815 * 25 24 23 47 47 H 1.08993 * 109.38935 * 166.77744 * 28 22 21 48 48 H 1.09002 * 109.38202 * 47.08503 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1311 2.5198 0.0918 6 6 4.3678 3.2413 1.2290 7 6 4.0636 2.8093 2.6404 8 1 3.6162 1.8153 2.6276 9 6 3.0866 3.7996 3.2774 10 6 5.3588 2.7758 3.4540 11 6 5.0746 2.2271 4.8285 12 1 4.0705 1.9322 5.0951 13 6 6.0964 2.1026 5.7459 14 7 7.3190 2.4623 5.4213 15 14 5.7439 1.4232 7.4498 16 1 5.1989 0.0469 7.3310 17 1 7.0012 1.3906 8.2395 18 1 4.7518 2.2912 8.1335 19 7 4.9058 4.3712 0.8663 20 7 5.0293 4.4100 -0.4125 21 6 4.5643 3.3018 -0.9391 22 7 4.5258 2.9833 -2.2872 23 6 4.8716 4.1478 -3.1134 24 6 6.2235 4.6968 -2.6538 25 7 7.2017 3.6153 -2.5809 26 6 6.8559 2.3245 -2.5337 27 8 7.7322 1.4912 -2.4425 28 6 5.4269 1.8632 -2.5895 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8616 0.7043 -0.9232 35 1 3.8528 0.5853 0.8528 36 1 2.1638 3.8234 2.6977 37 1 2.8669 3.4873 4.2984 38 1 3.5335 4.7937 3.2901 39 1 6.0869 2.1387 2.9519 40 1 5.7592 3.7858 3.5415 41 1 8.0379 2.3743 6.0666 42 1 4.1067 4.9155 -2.9970 43 1 4.9354 3.8478 -4.1594 44 1 6.1133 5.1518 -1.6694 45 1 6.5684 5.4492 -3.3632 46 1 8.1443 3.8434 -2.5656 47 1 5.2085 1.4821 -3.5870 48 1 5.2744 1.0688 -1.8589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772287056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:25 Heat of formation + Delta-G solvation = 22.366782 kcal Electronic energy + Delta-G solvation = -31023.572958 eV Core-core repulsion = 26923.070393 eV Total energy + Delta-G solvation = -4100.502565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.01294 -40.56499 -38.25652 -37.64764 -35.53888 -35.18988 -34.13544 -32.22674 -30.29628 -29.94775 -29.12954 -27.05463 -26.69626 -26.18099 -24.22931 -23.91562 -23.61968 -22.00081 -21.32402 -19.69340 -19.22271 -17.84516 -17.22899 -16.87685 -16.51667 -16.36616 -16.23009 -15.93192 -15.72115 -15.41128 -15.01984 -14.80625 -14.49463 -14.21629 -13.86796 -13.62649 -13.31183 -13.26293 -12.90442 -12.65619 -12.40984 -12.36477 -12.03411 -11.80432 -11.64603 -11.58665 -11.28529 -11.06303 -10.99032 -10.93219 -10.76999 -10.51586 -10.25311 -10.08338 -9.98631 -9.97730 -9.70008 -9.33293 -9.15686 -8.94814 -8.37422 -8.17153 -6.00948 -4.05113 1.82524 2.11353 2.41940 2.95138 3.09287 3.32554 3.37966 3.38991 3.41530 3.74765 4.20897 4.38536 4.42358 4.45814 4.63007 4.68588 4.72529 4.83884 4.98661 5.03100 5.07694 5.10887 5.15184 5.23336 5.31980 5.34945 5.37857 5.41840 5.46439 5.53347 5.83434 5.95885 5.97144 6.06467 6.17939 6.25348 6.62322 6.63208 6.69420 6.78797 6.83196 6.97735 7.12199 7.18680 7.59924 7.74653 7.96635 7.99897 8.32716 8.98818 9.01153 9.58710 11.10029 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.004052 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.451379 B = 6908.341121 C = 8503.485124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.053 3.947 4 C 0.109 3.891 5 N -0.474 5.474 6 C 0.227 3.773 7 C -0.005 4.005 8 H 0.074 0.926 9 C -0.125 4.125 10 C 0.039 3.961 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 N -0.282 5.282 20 N -0.309 5.309 21 C 0.322 3.678 22 N -0.441 5.441 23 C 0.056 3.944 24 C 0.047 3.953 25 N -0.711 5.711 26 C 0.489 3.511 27 O -0.550 6.550 28 C 0.035 3.965 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.014 0.986 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.132 0.868 45 H 0.080 0.920 46 H 0.402 0.598 47 H 0.128 0.872 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.960 0.583 -19.129 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.304 6.304 3 C -0.025 4.025 4 C -0.015 4.015 5 N -0.170 5.170 6 C -0.040 4.040 7 C -0.026 4.026 8 H 0.092 0.908 9 C -0.183 4.183 10 C 0.001 3.999 11 C -0.561 4.561 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.201 1.201 19 N -0.119 5.119 20 N -0.153 5.153 21 C -0.033 4.033 22 N -0.165 5.165 23 C -0.071 4.071 24 C -0.079 4.079 25 N -0.364 5.364 26 C 0.273 3.727 27 O -0.427 6.427 28 C -0.095 4.095 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.032 0.968 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.149 0.851 45 H 0.098 0.902 46 H 0.238 0.762 47 H 0.146 0.854 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.334 1.153 -19.057 22.202 hybrid contribution 0.211 -1.126 0.820 1.409 sum -11.123 0.027 -18.237 21.361 Atomic orbital electron populations 1.22770 0.80170 1.03028 1.00266 1.87806 1.20358 1.26709 1.95551 1.22704 0.92532 0.85535 1.01744 1.21629 0.92633 0.81072 1.06158 1.46112 1.48092 1.16312 1.06434 1.25699 0.98892 0.88757 0.90664 1.20072 1.01319 0.98301 0.82902 0.90779 1.21676 0.96163 0.99527 1.00914 1.19102 0.88903 0.98559 0.93316 1.21074 0.94691 1.42990 0.97305 0.92364 1.24992 0.95059 0.95467 0.98627 1.69967 1.00152 1.47359 1.35344 0.86663 0.77564 0.79529 0.84278 1.20255 1.21311 1.20141 1.74048 1.17178 1.17292 1.03426 1.74311 1.19876 1.18602 1.02528 1.22415 1.02283 0.91226 0.87415 1.59281 1.49534 1.08941 0.98755 1.22450 0.96768 0.91607 0.96273 1.22886 0.88319 0.89861 1.06795 1.45494 1.11071 1.05745 1.74063 1.20813 0.92525 0.82952 0.76423 1.90789 1.50489 1.51514 1.49902 1.22708 0.86299 0.94251 1.06275 0.93664 0.93976 0.89242 0.92081 0.92257 0.87964 0.87121 0.95057 0.90519 0.91961 0.96809 0.94962 0.92825 0.87457 0.88719 0.85088 0.90187 0.76181 0.85382 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.34 10.70 -35.23 -0.38 -4.72 16 3 C 0.05 0.59 6.26 37.16 0.23 0.82 16 4 C 0.11 1.36 5.90 -4.04 -0.02 1.34 16 5 N -0.47 -7.33 2.80 -114.08 -0.32 -7.65 16 6 C 0.23 4.27 6.58 -154.01 -1.01 3.25 16 7 C 0.00 -0.10 2.71 -91.77 -0.25 -0.34 16 8 H 0.07 1.37 7.08 -51.93 -0.37 1.01 16 9 C -0.12 -2.25 8.99 37.16 0.33 -1.92 16 10 C 0.04 1.00 4.43 -27.89 -0.12 0.87 16 11 C -0.52 -14.07 8.41 -34.44 -0.29 -14.36 16 12 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 N -0.28 -5.70 12.18 32.99 0.40 -5.30 16 20 N -0.31 -5.32 8.33 30.31 0.25 -5.07 16 21 C 0.32 4.77 6.30 -318.89 -2.01 2.76 16 22 N -0.44 -4.85 5.06 -176.14 -0.89 -5.74 16 23 C 0.06 0.48 5.84 -3.82 -0.02 0.46 16 24 C 0.05 0.47 6.56 -4.32 -0.03 0.44 16 25 N -0.71 -8.62 5.51 -61.06 -0.34 -8.95 16 26 C 0.49 6.90 7.39 -11.67 -0.09 6.82 16 27 O -0.55 -10.05 17.82 5.56 0.10 -9.95 16 28 C 0.03 0.38 5.59 -5.19 -0.03 0.35 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.10 5.70 -51.93 -0.30 0.80 16 35 H 0.11 1.47 7.47 -51.93 -0.39 1.09 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 1.41 6.95 -51.93 -0.36 1.05 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 44 H 0.13 1.73 5.03 -51.96 -0.26 1.47 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.40 4.67 8.84 -40.82 -0.36 4.31 16 47 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.11 1.32 5.57 -51.93 -0.29 1.03 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -35.17 385.78 -9.26 -44.43 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.32 Total: 3.44 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.29 Total: 3.49 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.16 Total: -58.72 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.28 Total: -14.67 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.17 -9.26 -44.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772287056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.795 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds