Wall clock time and date at job start Tue Mar 31 2020 19:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00297 * 2 1 4 4 C 1.52997 * 109.47330 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46946 * 183.83624 * 4 3 2 6 6 C 1.36744 * 127.13462 * 84.60484 * 5 4 3 7 7 C 1.50701 * 126.34976 * 0.05426 * 6 5 4 8 8 H 1.09003 * 109.46692 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.46738 * 240.00419 * 7 6 5 10 10 C 1.52993 * 109.47377 * 120.00231 * 7 6 5 11 11 C 1.50699 * 109.47233 * 185.00352 * 10 7 6 12 12 H 1.07999 * 119.99593 * 359.97438 * 11 10 7 13 13 C 1.37880 * 119.99949 * 180.02562 * 11 10 7 14 14 N 1.31507 * 119.99995 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99783 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47274 * 60.00147 * 15 13 11 17 17 H 1.48498 * 109.46973 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47386 * 299.99961 * 15 13 11 19 19 N 1.30298 * 107.30308 * 180.02562 * 6 5 4 20 20 N 1.28528 * 110.05266 * 359.73031 * 19 6 5 21 21 C 1.31219 * 109.86089 * 0.44532 * 20 19 6 22 22 N 1.38576 * 126.47222 * 179.82466 * 21 20 19 23 23 C 1.46913 * 110.99894 * 350.38492 * 22 21 20 24 24 C 1.52988 * 108.87302 * 54.32209 * 23 22 21 25 25 N 1.46006 * 109.95147 * 50.31375 * 24 23 22 26 26 C 1.33715 * 122.92687 * 341.87758 * 25 24 23 27 27 O 1.21278 * 118.62529 * 181.70793 * 26 25 24 28 28 C 1.46901 * 111.00222 * 113.23301 * 22 21 20 29 29 H 1.08994 * 109.47251 * 299.99814 * 1 2 3 30 30 H 1.08997 * 109.46618 * 60.00096 * 1 2 3 31 31 H 1.08999 * 109.46815 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46985 * 59.99751 * 3 2 1 33 33 H 1.09000 * 109.46740 * 300.00069 * 3 2 1 34 34 H 1.09005 * 109.47374 * 63.83318 * 4 3 2 35 35 H 1.09000 * 109.46836 * 303.83381 * 4 3 2 36 36 H 1.08994 * 109.47273 * 59.99881 * 9 7 6 37 37 H 1.09006 * 109.46408 * 180.02562 * 9 7 6 38 38 H 1.09003 * 109.47065 * 299.99203 * 9 7 6 39 39 H 1.09006 * 109.46921 * 304.99976 * 10 7 6 40 40 H 1.09000 * 109.47480 * 64.99503 * 10 7 6 41 41 H 0.97004 * 119.99938 * 180.02562 * 14 13 11 42 42 H 1.08995 * 109.45647 * 294.54657 * 23 22 21 43 43 H 1.09001 * 109.58881 * 174.17403 * 23 22 21 44 44 H 1.09002 * 109.37457 * 290.19142 * 24 23 22 45 45 H 1.09006 * 109.37214 * 170.43549 * 24 23 22 46 46 H 0.96997 * 118.53286 * 161.89815 * 25 24 23 47 47 H 1.08993 * 109.38935 * 166.77744 * 28 22 21 48 48 H 1.09002 * 109.38202 * 47.08503 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1311 2.5198 0.0918 6 6 4.3678 3.2413 1.2290 7 6 4.0636 2.8093 2.6404 8 1 3.6162 1.8153 2.6276 9 6 3.0866 3.7996 3.2774 10 6 5.3588 2.7758 3.4540 11 6 5.0746 2.2271 4.8285 12 1 4.0705 1.9322 5.0951 13 6 6.0964 2.1026 5.7459 14 7 7.3190 2.4623 5.4213 15 14 5.7439 1.4232 7.4498 16 1 5.1989 0.0469 7.3310 17 1 7.0012 1.3906 8.2395 18 1 4.7518 2.2912 8.1335 19 7 4.9058 4.3712 0.8663 20 7 5.0293 4.4100 -0.4125 21 6 4.5643 3.3018 -0.9391 22 7 4.5258 2.9833 -2.2872 23 6 4.8716 4.1478 -3.1134 24 6 6.2235 4.6968 -2.6538 25 7 7.2017 3.6153 -2.5809 26 6 6.8559 2.3245 -2.5337 27 8 7.7322 1.4912 -2.4425 28 6 5.4269 1.8632 -2.5895 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8616 0.7043 -0.9232 35 1 3.8528 0.5853 0.8528 36 1 2.1638 3.8234 2.6977 37 1 2.8669 3.4873 4.2984 38 1 3.5335 4.7937 3.2901 39 1 6.0869 2.1387 2.9519 40 1 5.7592 3.7858 3.5415 41 1 8.0379 2.3743 6.0666 42 1 4.1067 4.9155 -2.9970 43 1 4.9354 3.8478 -4.1594 44 1 6.1133 5.1518 -1.6694 45 1 6.5684 5.4492 -3.3632 46 1 8.1443 3.8434 -2.5656 47 1 5.2085 1.4821 -3.5870 48 1 5.2744 1.0688 -1.8589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772287056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:24 Heat of formation + Delta-G solvation = -3.130429 kcal Electronic energy + Delta-G solvation = -31024.678600 eV Core-core repulsion = 26923.070393 eV Total energy + Delta-G solvation = -4101.608207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.27498 -41.61172 -39.08363 -38.75367 -37.07298 -36.45310 -35.25205 -34.21753 -31.26715 -30.97262 -30.41258 -28.91312 -27.55757 -27.06012 -25.94239 -24.86733 -24.67423 -23.61965 -22.45623 -20.80295 -20.59923 -18.88788 -18.63793 -18.20772 -17.77505 -17.45763 -17.13466 -17.02391 -16.77473 -16.50485 -16.41728 -15.95661 -15.82251 -15.45544 -15.01046 -14.94299 -14.54174 -14.36279 -14.16528 -13.86044 -13.65203 -13.50140 -13.25503 -13.00315 -12.87539 -12.78390 -12.63131 -12.46055 -12.31615 -12.30439 -12.17153 -12.11817 -11.95199 -11.56349 -11.35735 -11.25719 -11.17062 -10.75092 -10.62206 -10.53943 -9.97287 -9.42217 -8.17389 -6.29385 0.58872 0.98704 1.33720 1.42992 1.46220 1.53591 1.70517 2.01422 2.42869 2.48254 2.84265 3.16895 3.30403 3.35387 3.41916 3.62459 3.77555 3.82397 3.88450 3.98988 4.09282 4.23387 4.31427 4.35524 4.39394 4.43871 4.48242 4.53048 4.56348 4.60569 4.67047 4.77070 4.87952 4.90865 5.00621 5.08404 5.15640 5.30188 5.36355 5.43127 5.50647 5.64995 5.67471 5.81601 5.99373 6.08301 6.13431 6.18759 6.86210 6.94900 7.40145 7.66481 8.94846 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009549 B = 0.004052 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.451379 B = 6908.341121 C = 8503.485124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.064 3.936 4 C 0.103 3.897 5 N -0.470 5.470 6 C 0.208 3.792 7 C 0.007 3.993 8 H 0.088 0.912 9 C -0.116 4.116 10 C 0.051 3.949 11 C -0.529 4.529 12 H 0.076 0.924 13 C -0.001 4.001 14 N -0.938 5.938 15 Si 0.965 3.035 16 H -0.264 1.264 17 H -0.291 1.291 18 H -0.262 1.262 19 N -0.320 5.320 20 N -0.325 5.325 21 C 0.337 3.663 22 N -0.426 5.426 23 C 0.053 3.947 24 C 0.045 3.955 25 N -0.708 5.708 26 C 0.479 3.521 27 O -0.602 6.602 28 C 0.040 3.960 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.044 0.956 39 H -0.027 1.027 40 H -0.007 1.007 41 H 0.261 0.739 42 H 0.119 0.881 43 H 0.135 0.865 44 H 0.100 0.900 45 H 0.116 0.884 46 H 0.401 0.599 47 H 0.173 0.827 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.808 -0.102 -20.815 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.014 4.014 4 C -0.020 4.020 5 N -0.165 5.165 6 C -0.060 4.060 7 C -0.014 4.014 8 H 0.107 0.893 9 C -0.174 4.174 10 C 0.013 3.987 11 C -0.567 4.567 12 H 0.094 0.906 13 C -0.199 4.199 14 N -0.578 5.578 15 Si 0.790 3.210 16 H -0.188 1.188 17 H -0.216 1.216 18 H -0.186 1.186 19 N -0.158 5.158 20 N -0.168 5.168 21 C -0.019 4.019 22 N -0.151 5.151 23 C -0.073 4.073 24 C -0.080 4.080 25 N -0.358 5.358 26 C 0.264 3.736 27 O -0.483 6.483 28 C -0.090 4.090 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.063 0.937 39 H -0.009 1.009 40 H 0.011 0.989 41 H 0.070 0.930 42 H 0.137 0.863 43 H 0.153 0.847 44 H 0.118 0.882 45 H 0.134 0.866 46 H 0.237 0.763 47 H 0.190 0.810 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.237 0.497 -20.763 25.180 hybrid contribution 1.123 -0.872 1.200 1.860 sum -13.114 -0.375 -19.563 23.555 Atomic orbital electron populations 1.22988 0.78487 1.04313 1.01101 1.87782 1.22182 1.26546 1.95676 1.22537 0.91132 0.85762 1.01980 1.21855 0.93941 0.79502 1.06676 1.46158 1.47791 1.16951 1.05628 1.25260 1.00317 0.89361 0.91087 1.19752 0.98634 0.99779 0.83248 0.89350 1.21577 0.96873 0.97868 1.01066 1.18833 0.90835 0.95067 0.93926 1.21536 0.95410 1.41998 0.97764 0.90556 1.26005 0.94714 0.95820 1.03322 1.70146 1.01435 1.49256 1.36938 0.85492 0.77440 0.79403 0.78688 1.18843 1.21647 1.18626 1.73969 1.17954 1.18586 1.05242 1.74380 1.20970 1.20116 1.01360 1.22913 0.99938 0.90202 0.88826 1.59495 1.49042 1.10059 0.96470 1.22747 0.95890 0.91051 0.97585 1.22951 0.88995 0.89848 1.06168 1.45645 1.11714 1.05876 1.72591 1.21459 0.93514 0.83004 0.75586 1.90765 1.52098 1.52929 1.52545 1.22825 0.83985 0.93651 1.08507 0.93450 0.92505 0.87833 0.92850 0.90953 0.85920 0.88376 0.91714 0.90891 0.93681 1.00858 0.98891 0.93005 0.86287 0.84729 0.88246 0.86566 0.76338 0.80982 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -8.16 10.70 -148.98 -1.59 -9.76 16 3 C 0.06 1.29 6.26 71.98 0.45 1.74 16 4 C 0.10 2.45 5.90 86.38 0.51 2.96 16 5 N -0.47 -14.33 2.80 -514.85 -1.44 -15.78 16 6 C 0.21 8.01 6.58 137.64 0.91 8.92 16 7 C 0.01 0.28 2.71 -11.54 -0.03 0.25 16 8 H 0.09 3.28 7.08 -2.39 -0.02 3.26 16 9 C -0.12 -4.17 8.99 71.98 0.65 -3.52 16 10 C 0.05 2.76 4.43 29.85 0.13 2.90 16 11 C -0.53 -29.11 8.41 25.60 0.22 -28.89 16 12 H 0.08 3.84 7.06 -2.91 -0.02 3.82 16 13 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 14 N -0.94 -58.66 13.29 21.45 0.28 -58.38 16 15 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 16 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 N -0.32 -13.38 12.18 -49.53 -0.60 -13.98 16 20 N -0.32 -11.25 8.33 -58.01 -0.48 -11.73 16 21 C 0.34 9.64 6.30 260.12 1.64 11.28 16 22 N -0.43 -8.15 5.06 -711.18 -3.60 -11.75 16 23 C 0.05 0.72 5.84 86.30 0.50 1.22 16 24 C 0.04 0.81 6.56 86.47 0.57 1.37 16 25 N -0.71 -16.55 5.51 -466.08 -2.57 -19.12 16 26 C 0.48 13.12 7.39 87.68 0.65 13.77 16 27 O -0.60 -22.31 17.82 -3.02 -0.05 -22.36 16 28 C 0.04 0.77 5.59 85.42 0.48 1.25 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.12 2.40 5.70 -2.38 -0.01 2.39 16 35 H 0.10 2.60 7.47 -2.39 -0.02 2.59 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.64 6.95 -2.38 -0.02 2.63 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H -0.03 -1.64 8.14 -2.38 -0.02 -1.66 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.13 0.86 8.07 -2.39 -0.02 0.84 16 44 H 0.10 2.58 5.03 -2.42 -0.01 2.57 16 45 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.40 9.33 8.84 -92.71 -0.82 8.51 16 47 H 0.17 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.11 2.27 5.57 -2.39 -0.01 2.26 16 Total: -1.00 -81.73 385.78 0.51 -81.22 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.17 Total: 20.50 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 8.38 Total: 15.26 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -8.41 Total: -130.75 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.65 Total: -32.12 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -81.73 0.51 -81.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772287056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.087 kcal (2) G-P(sol) polarization free energy of solvation -81.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds