Wall clock time and date at job start Tue Mar 31 2020 19:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99623 * 2 1 4 4 C 1.52998 * 109.46874 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47267 * 185.08424 * 4 3 2 6 6 C 1.36733 * 127.13556 * 85.75185 * 5 4 3 7 7 C 1.50702 * 126.35168 * 359.96778 * 6 5 4 8 8 H 1.08998 * 109.46423 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47378 * 120.00014 * 7 6 5 10 10 C 1.53000 * 109.47264 * 239.99996 * 7 6 5 11 11 C 1.50695 * 109.47144 * 174.99751 * 10 7 6 12 12 H 1.08006 * 120.00085 * 359.97438 * 11 10 7 13 13 C 1.37883 * 120.00317 * 180.02562 * 11 10 7 14 14 N 1.31519 * 119.99582 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00208 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47077 * 90.00132 * 15 13 11 17 17 H 1.48498 * 109.47130 * 210.00005 * 15 13 11 18 18 H 1.48504 * 109.46957 * 329.99727 * 15 13 11 19 19 N 1.30303 * 107.30610 * 179.83916 * 6 5 4 20 20 N 1.28534 * 110.04954 * 0.43948 * 19 6 5 21 21 C 1.31218 * 109.86057 * 359.71963 * 20 19 6 22 22 N 1.38580 * 126.47195 * 180.02562 * 21 20 19 23 23 C 1.47179 * 110.99941 * 351.30025 * 22 21 20 24 24 C 1.52985 * 108.73345 * 54.36547 * 23 22 21 25 25 N 1.46013 * 110.03767 * 50.29000 * 24 23 22 26 26 C 1.33717 * 122.92966 * 341.84187 * 25 24 23 27 27 O 1.21280 * 118.62670 * 181.68805 * 26 25 24 28 28 C 1.46895 * 110.99887 * 114.19284 * 22 21 20 29 29 H 1.09003 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47476 * 299.99643 * 1 2 3 31 31 H 1.08999 * 109.47456 * 59.99932 * 1 2 3 32 32 H 1.08998 * 109.47480 * 299.99955 * 3 2 1 33 33 H 1.08997 * 109.46688 * 60.00112 * 3 2 1 34 34 H 1.09005 * 109.47277 * 305.08345 * 4 3 2 35 35 H 1.09003 * 109.47642 * 65.08052 * 4 3 2 36 36 H 1.08995 * 109.47322 * 180.02562 * 9 7 6 37 37 H 1.09013 * 109.46762 * 300.00555 * 9 7 6 38 38 H 1.09002 * 109.47041 * 59.99876 * 9 7 6 39 39 H 1.09000 * 109.47250 * 294.99611 * 10 7 6 40 40 H 1.09001 * 109.47245 * 54.99641 * 10 7 6 41 41 H 0.96993 * 120.00038 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.59506 * 174.14331 * 23 22 21 43 43 H 1.09001 * 109.59815 * 294.58972 * 23 22 21 44 44 H 1.08996 * 109.37547 * 170.45973 * 24 23 22 45 45 H 1.08990 * 109.37607 * 290.23391 * 24 23 22 46 46 H 0.97002 * 118.53323 * 161.85677 * 25 24 23 47 47 H 1.09004 * 109.38596 * 47.08577 * 28 22 21 48 48 H 1.08996 * 109.39160 * 166.77672 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 4.1308 2.5176 0.1218 6 6 4.3854 3.2052 1.2759 7 6 4.1034 2.7316 2.6785 8 1 3.6567 1.7379 2.6434 9 6 5.4113 2.6746 3.4703 10 6 3.1367 3.7022 3.3599 11 6 2.7586 3.1653 4.7162 12 1 3.1667 2.2255 5.0580 13 6 1.8909 3.8732 5.5206 14 7 1.3937 5.0174 5.1043 15 14 1.4228 3.2080 7.2022 16 1 2.3819 3.7113 8.2181 17 1 0.0516 3.6602 7.5492 18 1 1.4628 1.7238 7.1760 19 7 4.9197 4.3447 0.9384 20 7 5.0107 4.4270 -0.3410 21 6 4.5410 3.3330 -0.8926 22 7 4.4746 3.0574 -2.2491 23 6 4.8164 4.2465 -3.0462 24 6 6.1824 4.7655 -2.5934 25 7 7.1508 3.6729 -2.5722 26 6 6.7930 2.3846 -2.5594 27 8 7.6624 1.5405 -2.5107 28 6 5.3586 1.9389 -2.6030 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8465 -0.8900 33 1 1.6885 1.8463 0.8900 34 1 3.8513 0.5671 0.8401 35 1 3.8631 0.7246 -0.9328 36 1 5.2074 2.3316 4.4846 37 1 6.1001 1.9830 2.9847 38 1 5.8585 3.6681 3.5052 39 1 3.6179 4.6735 3.4748 40 1 2.2403 3.8108 2.7493 41 1 0.7830 5.5153 5.6699 42 1 4.8587 3.9791 -4.1021 43 1 4.0627 5.0188 -2.8925 44 1 6.5231 5.5372 -3.2837 45 1 6.0950 5.1884 -1.5927 46 1 8.0959 3.8914 -2.5668 47 1 5.2115 1.1234 -1.8949 48 1 5.1182 1.5914 -3.6077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772287057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:26 Heat of formation + Delta-G solvation = -2.449920 kcal Electronic energy + Delta-G solvation = -31047.895732 eV Core-core repulsion = 26946.317034 eV Total energy + Delta-G solvation = -4101.578698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.26920 -41.58597 -39.09980 -38.72307 -37.06701 -36.45319 -35.23219 -34.20652 -31.25121 -30.98287 -30.40887 -28.89216 -27.58359 -27.07616 -25.95585 -24.84737 -24.64291 -23.65352 -22.44491 -20.79275 -20.59354 -18.89158 -18.62603 -18.13930 -17.79471 -17.47338 -17.15530 -16.98816 -16.76924 -16.57130 -16.33301 -15.99108 -15.78009 -15.51946 -15.00382 -14.90286 -14.54600 -14.38705 -14.07579 -13.94757 -13.60652 -13.49814 -13.28167 -13.00011 -12.86141 -12.77552 -12.61435 -12.49033 -12.36212 -12.29841 -12.22749 -12.08734 -11.92712 -11.52475 -11.35751 -11.25774 -11.17357 -10.79446 -10.60512 -10.53637 -9.96020 -9.39134 -8.16363 -6.27280 0.59861 0.98466 1.36439 1.43895 1.44941 1.55229 1.72040 2.02298 2.43341 2.47828 2.80671 3.18007 3.31648 3.35503 3.41433 3.62154 3.76977 3.82907 3.88306 3.98918 4.06756 4.23822 4.31852 4.34087 4.39666 4.44321 4.47403 4.51636 4.52603 4.60666 4.66239 4.77414 4.83707 4.91262 5.01982 5.07194 5.14001 5.30829 5.34471 5.45551 5.51338 5.67435 5.68542 5.83576 5.96069 6.05624 6.14708 6.21060 6.87688 6.97225 7.41678 7.67001 8.95823 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.003652 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.194458 B = 7665.679063 C = 8815.430160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.058 3.942 4 C 0.108 3.892 5 N -0.472 5.472 6 C 0.208 3.792 7 C 0.006 3.994 8 H 0.088 0.912 9 C -0.119 4.119 10 C 0.055 3.945 11 C -0.529 4.529 12 H 0.072 0.928 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.961 3.039 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.258 1.258 19 N -0.320 5.320 20 N -0.326 5.326 21 C 0.340 3.660 22 N -0.432 5.432 23 C 0.052 3.948 24 C 0.048 3.952 25 N -0.706 5.706 26 C 0.483 3.517 27 O -0.598 6.598 28 C 0.039 3.961 29 H 0.111 0.889 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.043 0.957 39 H -0.007 1.007 40 H -0.019 1.019 41 H 0.262 0.738 42 H 0.135 0.865 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.100 0.900 46 H 0.403 0.597 47 H 0.112 0.888 48 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 -7.648 -19.957 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.020 4.020 4 C -0.014 4.014 5 N -0.167 5.167 6 C -0.061 4.061 7 C -0.015 4.015 8 H 0.106 0.894 9 C -0.177 4.177 10 C 0.017 3.983 11 C -0.567 4.567 12 H 0.091 0.909 13 C -0.195 4.195 14 N -0.574 5.574 15 Si 0.786 3.214 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.182 1.182 19 N -0.157 5.157 20 N -0.170 5.170 21 C -0.017 4.017 22 N -0.156 5.156 23 C -0.074 4.074 24 C -0.077 4.077 25 N -0.356 5.356 26 C 0.269 3.731 27 O -0.479 6.479 28 C -0.091 4.091 29 H 0.129 0.871 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.128 0.872 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.011 0.989 40 H 0.000 1.000 41 H 0.070 0.930 42 H 0.153 0.847 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.118 0.882 46 H 0.239 0.761 47 H 0.129 0.871 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.173 -6.934 -19.903 21.314 hybrid contribution -0.199 -0.274 1.141 1.190 sum 2.975 -7.207 -18.762 20.318 Atomic orbital electron populations 1.22976 0.78795 1.04432 1.00690 1.87735 1.21881 1.26194 1.95621 1.22565 0.92491 0.85762 1.01175 1.21855 0.92720 0.79625 1.07192 1.46171 1.47991 1.17063 1.05476 1.25253 1.00075 0.89996 0.90742 1.19758 0.98326 0.99820 0.83571 0.89360 1.21591 0.94384 1.01340 1.00346 1.18804 0.91785 0.93480 0.94219 1.21551 1.26722 1.06998 1.01403 0.90945 1.25923 0.96116 0.95040 1.02420 1.70132 1.32668 1.15695 1.38928 0.85500 0.77247 0.79284 0.79362 1.20068 1.21267 1.18151 1.73972 1.19147 1.16748 1.05843 1.74368 1.21553 1.20304 1.00758 1.22906 1.00101 0.89636 0.89034 1.59515 1.50027 1.09988 0.96104 1.22772 0.95908 0.90516 0.98240 1.22877 0.88917 0.89653 1.06256 1.45603 1.11578 1.05678 1.72749 1.21326 0.93311 0.82938 0.75542 1.90757 1.52505 1.51879 1.52766 1.22845 0.84373 0.93586 1.08254 0.87112 0.94574 0.92560 0.91430 0.94583 0.87154 0.85222 0.90778 0.92372 0.93734 0.98850 1.00029 0.92959 0.84710 0.87088 0.86677 0.88214 0.76096 0.87051 0.81298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.40 -9.39 10.70 -148.98 -1.59 -10.99 16 3 C 0.06 1.46 6.26 71.98 0.45 1.91 16 4 C 0.11 2.56 5.94 86.38 0.51 3.07 16 5 N -0.47 -14.33 2.80 -514.85 -1.44 -15.78 16 6 C 0.21 8.00 6.58 137.64 0.91 8.90 16 7 C 0.01 0.25 2.71 -11.54 -0.03 0.22 16 8 H 0.09 3.28 7.05 -2.39 -0.02 3.27 16 9 C -0.12 -4.45 8.98 71.98 0.65 -3.80 16 10 C 0.06 2.88 4.43 29.85 0.13 3.01 16 11 C -0.53 -28.56 8.41 25.60 0.22 -28.35 16 12 H 0.07 3.64 7.06 -2.91 -0.02 3.62 16 13 C 0.00 0.16 5.46 84.66 0.46 0.62 16 14 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 15 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 N -0.32 -13.37 12.18 -49.53 -0.60 -13.97 16 20 N -0.33 -11.32 8.36 -58.00 -0.48 -11.80 16 21 C 0.34 9.69 6.31 260.11 1.64 11.33 16 22 N -0.43 -8.26 5.07 -710.49 -3.60 -11.87 16 23 C 0.05 0.72 5.86 86.24 0.51 1.23 16 24 C 0.05 0.80 6.56 86.47 0.57 1.36 16 25 N -0.71 -14.05 5.51 -466.09 -2.57 -16.62 16 26 C 0.48 11.31 7.39 87.68 0.65 11.96 16 27 O -0.60 -18.96 17.82 -3.03 -0.05 -19.02 16 28 C 0.04 0.66 5.61 85.42 0.48 1.14 16 29 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 2.55 7.42 -2.38 -0.02 2.53 16 35 H 0.13 2.31 5.62 -2.39 -0.01 2.29 16 36 H 0.07 2.77 6.95 -2.39 -0.02 2.76 16 37 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 41 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.13 0.91 8.08 -2.39 -0.02 0.89 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.10 2.46 5.04 -2.40 -0.01 2.45 16 46 H 0.40 7.65 8.84 -92.71 -0.82 6.83 16 47 H 0.11 1.99 5.46 -2.38 -0.01 1.97 16 48 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -77.82 385.63 0.51 -77.31 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.17 Total: 19.50 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 8.38 Total: 14.37 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -8.42 Total: -126.27 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -1.65 Total: -30.00 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -77.82 0.51 -77.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772287057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.858 kcal (2) G-P(sol) polarization free energy of solvation -77.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds