Wall clock time and date at job start Tue Mar 31 2020 20:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47355 * 2 1 4 4 C 1.34771 * 120.00157 * 180.02562 * 3 2 1 5 5 O 1.21583 * 119.99981 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99954 * 179.97438 * 4 3 2 7 7 N 1.40095 * 120.00147 * 0.02562 * 6 4 3 8 8 C 1.34784 * 119.99932 * 179.97438 * 7 6 4 9 9 O 1.21281 * 120.00093 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99865 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.47110 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47116 * 179.97438 * 11 10 8 13 13 C 1.39862 * 126.04094 * 269.68901 * 12 11 10 14 14 C 1.50702 * 125.90180 * 0.02562 * 13 12 11 15 15 N 1.30842 * 108.19992 * 179.81747 * 13 12 11 16 16 N 1.40084 * 108.20663 * 0.44091 * 15 13 12 17 17 C 1.46495 * 126.04013 * 179.73793 * 16 15 13 18 18 C 1.50699 * 109.47131 * 269.98016 * 17 16 15 19 19 H 1.08002 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00208 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99755 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47257 * 89.99976 * 22 20 18 24 24 H 1.48501 * 109.46940 * 210.00122 * 22 20 18 25 25 H 1.48499 * 109.47462 * 329.99632 * 22 20 18 26 26 C 1.34950 * 107.92381 * 359.71898 * 16 15 13 27 27 C 1.50694 * 126.12576 * 179.97438 * 26 16 15 28 28 H 1.08999 * 109.46611 * 300.00410 * 1 2 3 29 29 H 1.09000 * 109.46984 * 59.99896 * 1 2 3 30 30 H 1.08998 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46611 * 239.99590 * 2 1 3 32 32 H 1.09000 * 109.46984 * 120.00104 * 2 1 3 33 33 H 0.97000 * 120.00132 * 359.97438 * 3 2 1 34 34 H 0.97006 * 119.99666 * 180.02562 * 6 4 3 35 35 H 0.96998 * 120.00490 * 359.97438 * 7 6 4 36 36 H 1.09000 * 109.47543 * 59.99570 * 10 8 7 37 37 H 1.09008 * 109.47338 * 300.00084 * 10 8 7 38 38 H 1.09000 * 109.46884 * 60.00335 * 11 10 8 39 39 H 1.09000 * 109.46955 * 299.99651 * 11 10 8 40 40 H 1.08998 * 109.47393 * 89.99256 * 14 13 12 41 41 H 1.09001 * 109.46747 * 209.99996 * 14 13 12 42 42 H 1.08998 * 109.46776 * 329.99757 * 14 13 12 43 43 H 1.09001 * 109.47188 * 29.97306 * 17 16 15 44 44 H 1.08997 * 109.47530 * 149.97532 * 17 16 15 45 45 H 0.96999 * 120.00262 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47170 * 270.02464 * 27 26 16 47 47 H 1.09004 * 109.47112 * 30.02444 * 27 26 16 48 48 H 1.09003 * 109.46820 * 150.02019 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1335 0.7033 -0.0005 6 7 3.7927 2.8981 -0.0010 7 7 2.8824 3.9629 -0.0005 8 6 3.3317 5.2337 -0.0005 9 8 4.5241 5.4553 -0.0005 10 6 2.3525 6.3791 0.0007 11 6 3.1175 7.7041 0.0011 12 6 2.1382 8.8496 0.0016 13 6 1.6080 9.4795 -1.1290 14 6 1.9169 9.1297 -2.5620 15 7 0.7940 10.4221 -0.7277 16 7 0.7884 10.4284 0.6731 17 6 0.0148 11.3323 1.5278 18 6 0.8294 12.5657 1.8215 19 1 1.8240 12.6660 1.4127 20 6 0.3049 13.5662 2.6121 21 7 -0.9065 13.4443 3.1094 22 14 1.3148 15.0947 2.9767 23 1 1.0530 16.1210 1.9359 24 1 0.9361 15.6322 4.3082 25 1 2.7583 14.7461 2.9760 26 6 1.6211 9.4543 1.0962 27 6 1.9216 9.1033 2.5305 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.3882 2.1185 -0.0004 34 1 4.7465 3.0753 -0.0018 35 1 1.9287 3.7858 -0.0001 36 1 1.7265 6.3211 0.8911 37 1 1.7250 6.3217 -0.8888 38 1 3.7437 7.7624 -0.8892 39 1 3.7445 7.7613 0.8908 40 1 1.2101 8.3777 -2.9129 41 1 1.8334 10.0235 -3.1802 42 1 2.9306 8.7347 -2.6291 43 1 -0.9048 11.6175 1.0167 44 1 -0.2304 10.8278 2.4623 45 1 -1.2754 14.1480 3.6659 46 1 2.7749 9.6867 2.8762 47 1 1.0529 9.3284 3.1493 48 1 2.1541 8.0409 2.6035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139204059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:40 Heat of formation + Delta-G solvation = 22.723490 kcal Electronic energy + Delta-G solvation = -28448.920034 eV Core-core repulsion = 24348.432937 eV Total energy + Delta-G solvation = -4100.487097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93947 -40.62946 -39.54115 -36.10506 -35.80832 -34.49517 -33.52156 -32.54166 -31.76078 -30.66509 -29.90434 -29.01656 -26.80454 -25.93129 -24.07783 -23.79179 -22.38060 -21.54413 -21.13862 -19.51218 -18.89083 -18.72905 -17.94574 -16.77471 -16.46544 -16.42041 -15.95615 -15.81034 -15.46351 -14.99783 -14.66739 -14.61280 -14.43254 -14.07307 -13.79816 -13.17025 -13.01301 -12.99272 -12.78270 -12.54892 -12.41716 -12.34936 -12.28161 -12.12790 -11.86405 -11.74190 -11.59947 -11.40710 -11.34811 -11.02946 -10.96554 -10.84477 -10.83461 -10.32622 -10.24466 -9.78147 -9.69586 -9.68163 -8.68762 -8.68084 -8.25170 -7.56416 -6.30720 -4.38060 1.48704 2.20109 2.52209 2.70177 2.72267 3.18684 3.25094 3.28270 3.29354 3.54526 4.14617 4.26087 4.43521 4.58735 4.59725 4.83543 5.01340 5.03971 5.06737 5.25325 5.28977 5.30395 5.40447 5.50394 5.54675 5.57878 5.73314 5.86001 5.87211 5.87818 5.93839 5.97916 6.07185 6.16487 6.17500 6.30217 6.34786 6.46913 6.77159 6.93582 6.97231 7.05484 7.24154 7.44477 7.62009 7.83602 7.83838 7.98981 8.10417 8.60678 8.70429 9.28639 10.76906 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.001959 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.831751 B =14292.880846 C =14544.144848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.131 3.869 3 N -0.745 5.745 4 C 0.712 3.288 5 O -0.576 6.576 6 N -0.533 5.533 7 N -0.538 5.538 8 C 0.516 3.484 9 O -0.529 6.529 10 C -0.124 4.124 11 C -0.010 4.010 12 C -0.272 4.272 13 C 0.052 3.948 14 C -0.065 4.065 15 N -0.296 5.296 16 N -0.324 5.324 17 C 0.257 3.743 18 C -0.536 4.536 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.272 1.272 26 C 0.096 3.904 27 C -0.087 4.087 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.393 0.607 34 H 0.443 0.557 35 H 0.418 0.582 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.268 0.732 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 -23.166 -5.389 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.007 3.993 3 N -0.404 5.404 4 C 0.411 3.589 5 O -0.450 6.450 6 N -0.289 5.289 7 N -0.291 5.291 8 C 0.304 3.696 9 O -0.402 6.402 10 C -0.165 4.165 11 C -0.050 4.050 12 C -0.284 4.284 13 C -0.113 4.113 14 C -0.124 4.124 15 N -0.120 5.120 16 N -0.103 5.103 17 C 0.139 3.861 18 C -0.574 4.574 19 H 0.082 0.918 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.197 1.197 26 C -0.036 4.036 27 C -0.145 4.145 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.227 0.773 34 H 0.289 0.711 35 H 0.259 0.741 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.351 -22.637 -5.534 23.343 hybrid contribution 0.402 0.755 0.583 1.035 sum 1.753 -21.883 -4.951 22.504 Atomic orbital electron populations 1.22038 0.94087 1.03608 1.02770 1.21239 0.94168 0.81137 1.02738 1.45216 1.05082 1.09616 1.80462 1.15703 0.83251 0.81640 0.78303 1.91035 1.54931 1.40319 1.58721 1.44552 1.06686 0.96955 1.80709 1.45232 1.05424 0.99844 1.78595 1.21468 0.91032 0.81767 0.75342 1.90751 1.16899 1.83830 1.48709 1.21765 0.97731 0.91881 1.05144 1.19403 0.94587 0.87748 1.03213 1.19279 1.11083 1.06656 0.91375 1.21950 0.97743 0.95634 0.95944 1.20037 1.01236 1.01463 0.89670 1.77296 1.23026 1.21291 0.90409 1.49266 1.32556 1.24687 1.03812 1.19664 0.91392 0.87295 0.87752 1.21296 1.02063 1.02221 1.31852 0.91795 1.24928 0.95160 0.98587 0.95118 1.69912 1.15133 1.34404 1.33511 0.86351 0.80311 0.82280 0.77740 1.20295 1.20864 1.19650 1.20792 0.94652 0.91914 0.96246 1.20362 1.02993 1.01189 0.89976 0.91764 0.91785 0.90398 0.91267 0.91253 0.77268 0.71079 0.74093 0.88328 0.88241 0.90983 0.91113 0.91570 0.91534 0.91195 0.93054 0.93069 0.92233 0.90375 0.90884 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.46 10.03 37.16 0.37 -0.09 16 2 C 0.13 0.70 6.39 -4.04 -0.03 0.67 16 3 N -0.75 -4.54 5.52 -65.23 -0.36 -4.90 16 4 C 0.71 6.92 8.68 -86.92 -0.75 6.17 16 5 O -0.58 -7.89 17.18 5.29 0.09 -7.80 16 6 N -0.53 -4.76 6.26 27.63 0.17 -4.59 16 7 N -0.54 -3.72 6.26 31.22 0.20 -3.52 16 8 C 0.52 4.88 7.95 -10.98 -0.09 4.79 16 9 O -0.53 -7.09 15.82 5.56 0.09 -7.00 16 10 C -0.12 -1.07 5.68 -27.89 -0.16 -1.23 16 11 C -0.01 -0.13 4.41 -27.88 -0.12 -0.25 16 12 C -0.27 -4.41 5.35 -105.05 -0.56 -4.97 16 13 C 0.05 0.91 7.22 -82.41 -0.59 0.32 16 14 C -0.07 -0.85 10.26 36.01 0.37 -0.48 16 15 N -0.30 -6.48 12.58 33.67 0.42 -6.06 16 16 N -0.32 -7.19 3.60 -58.32 -0.21 -7.40 16 17 C 0.26 6.36 6.00 -5.20 -0.03 6.33 16 18 C -0.54 -14.47 9.39 -34.44 -0.32 -14.80 16 19 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 20 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 22 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 26 C 0.10 1.77 6.93 -82.26 -0.57 1.20 16 27 C -0.09 -1.32 9.72 36.00 0.35 -0.97 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.39 1.32 6.39 -40.82 -0.26 1.05 16 34 H 0.44 4.45 8.10 -182.60 -1.48 2.97 16 35 H 0.42 1.47 6.70 -182.60 -1.22 0.25 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.07 0.91 7.20 -51.93 -0.37 0.53 16 39 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.78 7.25 -51.93 -0.38 0.41 16 43 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.05 1.25 7.05 -51.93 -0.37 0.88 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.07 1.14 7.08 -51.93 -0.37 0.77 16 48 H 0.07 0.83 7.77 -51.93 -0.40 0.42 16 LS Contribution 405.79 15.07 6.12 6.12 Total: -1.00 -35.06 405.79 -9.45 -44.52 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -9.45 Total: 0.34 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.24 Total: -1.65 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.96 Total: -50.38 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.18 Total: -14.80 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.06 -9.45 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139204059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.239 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds