Wall clock time and date at job start Tue Mar 31 2020 20:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47355 * 2 1 4 4 C 1.34771 * 120.00157 * 180.02562 * 3 2 1 5 5 O 1.21583 * 119.99981 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99954 * 179.97438 * 4 3 2 7 7 N 1.40095 * 120.00147 * 0.02562 * 6 4 3 8 8 C 1.34784 * 119.99932 * 179.97438 * 7 6 4 9 9 O 1.21281 * 120.00093 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99865 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.47110 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47116 * 179.97438 * 11 10 8 13 13 C 1.39862 * 126.04094 * 269.68901 * 12 11 10 14 14 C 1.50702 * 125.90180 * 0.02562 * 13 12 11 15 15 N 1.30842 * 108.19992 * 179.81747 * 13 12 11 16 16 N 1.40084 * 108.20663 * 0.44091 * 15 13 12 17 17 C 1.46495 * 126.04013 * 179.73793 * 16 15 13 18 18 C 1.50699 * 109.47131 * 269.98016 * 17 16 15 19 19 H 1.08002 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00208 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99755 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47257 * 89.99976 * 22 20 18 24 24 H 1.48501 * 109.46940 * 210.00122 * 22 20 18 25 25 H 1.48499 * 109.47462 * 329.99632 * 22 20 18 26 26 C 1.34950 * 107.92381 * 359.71898 * 16 15 13 27 27 C 1.50694 * 126.12576 * 179.97438 * 26 16 15 28 28 H 1.08999 * 109.46611 * 300.00410 * 1 2 3 29 29 H 1.09000 * 109.46984 * 59.99896 * 1 2 3 30 30 H 1.08998 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46611 * 239.99590 * 2 1 3 32 32 H 1.09000 * 109.46984 * 120.00104 * 2 1 3 33 33 H 0.97000 * 120.00132 * 359.97438 * 3 2 1 34 34 H 0.97006 * 119.99666 * 180.02562 * 6 4 3 35 35 H 0.96998 * 120.00490 * 359.97438 * 7 6 4 36 36 H 1.09000 * 109.47543 * 59.99570 * 10 8 7 37 37 H 1.09008 * 109.47338 * 300.00084 * 10 8 7 38 38 H 1.09000 * 109.46884 * 60.00335 * 11 10 8 39 39 H 1.09000 * 109.46955 * 299.99651 * 11 10 8 40 40 H 1.08998 * 109.47393 * 89.99256 * 14 13 12 41 41 H 1.09001 * 109.46747 * 209.99996 * 14 13 12 42 42 H 1.08998 * 109.46776 * 329.99757 * 14 13 12 43 43 H 1.09001 * 109.47188 * 29.97306 * 17 16 15 44 44 H 1.08997 * 109.47530 * 149.97532 * 17 16 15 45 45 H 0.96999 * 120.00262 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47170 * 270.02464 * 27 26 16 47 47 H 1.09004 * 109.47112 * 30.02444 * 27 26 16 48 48 H 1.09003 * 109.46820 * 150.02019 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1335 0.7033 -0.0005 6 7 3.7927 2.8981 -0.0010 7 7 2.8824 3.9629 -0.0005 8 6 3.3317 5.2337 -0.0005 9 8 4.5241 5.4553 -0.0005 10 6 2.3525 6.3791 0.0007 11 6 3.1175 7.7041 0.0011 12 6 2.1382 8.8496 0.0016 13 6 1.6080 9.4795 -1.1290 14 6 1.9169 9.1297 -2.5620 15 7 0.7940 10.4221 -0.7277 16 7 0.7884 10.4284 0.6731 17 6 0.0148 11.3323 1.5278 18 6 0.8294 12.5657 1.8215 19 1 1.8240 12.6660 1.4127 20 6 0.3049 13.5662 2.6121 21 7 -0.9065 13.4443 3.1094 22 14 1.3148 15.0947 2.9767 23 1 1.0530 16.1210 1.9359 24 1 0.9361 15.6322 4.3082 25 1 2.7583 14.7461 2.9760 26 6 1.6211 9.4543 1.0962 27 6 1.9216 9.1033 2.5305 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.3882 2.1185 -0.0004 34 1 4.7465 3.0753 -0.0018 35 1 1.9287 3.7858 -0.0001 36 1 1.7265 6.3211 0.8911 37 1 1.7250 6.3217 -0.8888 38 1 3.7437 7.7624 -0.8892 39 1 3.7445 7.7613 0.8908 40 1 1.2101 8.3777 -2.9129 41 1 1.8334 10.0235 -3.1802 42 1 2.9306 8.7347 -2.6291 43 1 -0.9048 11.6175 1.0167 44 1 -0.2304 10.8278 2.4623 45 1 -1.2754 14.1480 3.6659 46 1 2.7749 9.6867 2.8762 47 1 1.0529 9.3284 3.1493 48 1 2.1541 8.0409 2.6035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139204059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:39 Heat of formation + Delta-G solvation = -3.028333 kcal Electronic energy + Delta-G solvation = -28450.036717 eV Core-core repulsion = 24348.432937 eV Total energy + Delta-G solvation = -4101.603780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.13011 -41.59536 -40.34389 -36.90769 -36.37935 -36.05466 -34.86379 -34.16434 -32.62021 -31.51368 -30.82143 -30.36867 -28.00257 -27.58281 -25.37593 -24.24879 -23.92598 -22.20264 -21.92478 -20.32316 -20.20711 -20.00714 -18.82433 -18.71700 -17.39447 -17.11962 -17.02485 -16.63739 -16.46179 -16.23565 -15.95001 -15.57609 -15.23084 -15.09275 -14.79871 -14.62169 -14.38179 -14.08409 -13.89258 -13.60199 -13.34020 -13.29231 -13.24711 -13.17079 -12.83688 -12.74300 -12.66014 -12.63687 -12.58105 -12.54227 -12.29920 -12.21223 -11.82337 -11.81630 -11.69246 -11.16501 -11.03042 -10.74715 -10.31361 -9.80352 -9.36939 -8.99852 -8.34314 -6.51580 0.78967 1.22147 1.35669 1.37486 1.46206 1.48086 1.92109 1.98042 1.98257 2.03831 2.33464 2.95264 3.41181 3.89784 3.97868 4.00602 4.12670 4.26061 4.27178 4.28577 4.38910 4.55406 4.61312 4.68188 4.73158 4.76709 4.88812 4.91768 4.92592 4.94633 4.99953 5.09259 5.10161 5.19137 5.27101 5.34604 5.36757 5.38850 5.47931 5.52165 5.58681 5.60669 5.81769 6.09894 6.30283 6.34708 6.61335 6.64331 7.16272 7.19717 7.19860 7.38736 8.71379 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.001959 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.831751 B =14292.880846 C =14544.144848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 N -0.729 5.729 4 C 0.709 3.291 5 O -0.620 6.620 6 N -0.535 5.535 7 N -0.518 5.518 8 C 0.523 3.477 9 O -0.570 6.570 10 C -0.114 4.114 11 C -0.007 4.007 12 C -0.256 4.256 13 C 0.056 3.944 14 C -0.064 4.064 15 N -0.352 5.352 16 N -0.356 5.356 17 C 0.275 3.725 18 C -0.552 4.552 19 H 0.046 0.954 20 C 0.022 3.978 21 N -0.917 5.917 22 Si 0.969 3.031 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.270 1.270 26 C 0.079 3.921 27 C -0.084 4.084 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.408 0.592 34 H 0.438 0.562 35 H 0.436 0.564 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.019 0.981 44 H 0.048 0.952 45 H 0.273 0.727 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 -24.427 -5.731 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.003 3.997 3 N -0.388 5.388 4 C 0.408 3.592 5 O -0.498 6.498 6 N -0.289 5.289 7 N -0.272 5.272 8 C 0.312 3.688 9 O -0.447 6.447 10 C -0.155 4.155 11 C -0.046 4.046 12 C -0.267 4.267 13 C -0.109 4.109 14 C -0.122 4.122 15 N -0.176 5.176 16 N -0.136 5.136 17 C 0.156 3.844 18 C -0.590 4.590 19 H 0.065 0.935 20 C -0.179 4.179 21 N -0.556 5.556 22 Si 0.793 3.207 23 H -0.201 1.201 24 H -0.195 1.195 25 H -0.195 1.195 26 C -0.050 4.050 27 C -0.142 4.142 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.246 0.754 34 H 0.282 0.718 35 H 0.281 0.719 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.279 -23.923 -5.878 24.667 hybrid contribution 0.415 1.053 0.611 1.286 sum 1.694 -22.870 -5.267 23.529 Atomic orbital electron populations 1.21992 0.91667 1.04453 1.03489 1.21344 0.96016 0.80456 1.01844 1.45142 1.03993 1.10639 1.79034 1.15849 0.83968 0.81225 0.78130 1.91002 1.56357 1.41702 1.60720 1.44517 1.06833 0.97225 1.80338 1.45020 1.05995 0.98803 1.77380 1.21494 0.90370 0.82350 0.74621 1.90754 1.18642 1.84455 1.50845 1.21649 0.97191 0.89317 1.07382 1.19395 0.93849 0.88170 1.03176 1.19646 1.10260 1.06833 0.90009 1.22791 0.95790 0.93943 0.98392 1.20229 1.03317 1.02144 0.86559 1.77233 1.25841 1.24016 0.90500 1.48990 1.34511 1.26075 1.04002 1.19107 0.90311 0.87347 0.87646 1.21436 1.01609 1.03729 1.32223 0.93533 1.25719 0.96173 1.01293 0.94725 1.69990 1.16289 1.35455 1.33833 0.85393 0.78763 0.78573 0.78004 1.20106 1.19463 1.19481 1.21480 0.94077 0.91114 0.98353 1.20461 1.02239 1.03617 0.87911 0.91056 0.90947 0.89555 0.92189 0.92284 0.75449 0.71752 0.71922 0.86334 0.85807 0.90793 0.91572 0.88723 0.92060 0.88909 0.96309 0.93397 0.91765 0.90855 0.91928 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.47 10.03 71.98 0.72 0.25 16 2 C 0.13 1.18 6.39 86.38 0.55 1.73 16 3 N -0.73 -7.41 5.52 -478.54 -2.64 -10.05 16 4 C 0.71 12.97 8.68 179.06 1.55 14.53 16 5 O -0.62 -17.00 17.18 -3.98 -0.07 -17.07 16 6 N -0.54 -8.71 6.26 -184.75 -1.16 -9.86 16 7 N -0.52 -5.59 6.26 -173.53 -1.09 -6.67 16 8 C 0.52 8.28 7.95 87.65 0.70 8.98 16 9 O -0.57 -14.16 15.82 -3.03 -0.05 -14.20 16 10 C -0.11 -1.53 5.68 29.85 0.17 -1.36 16 11 C -0.01 -0.15 4.41 29.85 0.13 -0.02 16 12 C -0.26 -7.83 5.35 -20.14 -0.11 -7.94 16 13 C 0.06 1.89 7.22 43.10 0.31 2.20 16 14 C -0.06 -1.49 10.26 71.24 0.73 -0.76 16 15 N -0.35 -15.64 12.58 -47.38 -0.60 -16.24 16 16 N -0.36 -16.20 3.60 -338.42 -1.22 -17.42 16 17 C 0.28 14.26 6.00 85.63 0.51 14.77 16 18 C -0.55 -30.76 9.39 25.60 0.24 -30.52 16 19 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 20 C 0.02 1.19 5.46 84.66 0.46 1.66 16 21 N -0.92 -51.50 13.29 21.45 0.28 -51.21 16 22 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.08 2.89 6.93 41.40 0.29 3.18 16 27 C -0.08 -2.47 9.72 71.23 0.69 -1.77 16 28 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.41 1.44 6.39 -92.71 -0.59 0.85 16 34 H 0.44 8.44 8.10 -213.32 -1.73 6.71 16 35 H 0.44 1.35 6.70 -213.33 -1.43 -0.08 16 36 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.63 7.20 -2.39 -0.02 1.62 16 39 H 0.07 1.55 7.73 -2.39 -0.02 1.53 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 1.75 7.25 -2.39 -0.02 1.73 16 43 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.05 2.45 7.05 -2.39 -0.02 2.43 16 45 H 0.27 14.32 8.31 -92.71 -0.77 13.54 16 46 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.06 1.95 7.08 -2.39 -0.02 1.93 16 48 H 0.11 2.28 7.77 -2.39 -0.02 2.26 16 Total: -1.00 -80.03 405.79 -0.29 -80.31 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -2.74 Total: 12.44 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 6.95 Total: 4.92 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -6.41 Total: -111.46 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.12 Total: -31.27 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -80.03 -0.29 -80.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139204059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.286 kcal (2) G-P(sol) polarization free energy of solvation -80.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds