Wall clock time and date at job start Tue Mar 31 2020 21:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 119.99796 * 2 1 4 4 H 1.08003 * 120.00236 * 202.35154 * 3 2 1 5 5 C 1.38815 * 120.00155 * 22.35495 * 3 2 1 6 6 N 1.31614 * 120.00064 * 11.43559 * 5 3 2 7 7 Si 1.86802 * 119.99926 * 191.43942 * 5 3 2 8 8 H 1.48503 * 109.47184 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47287 * 119.99985 * 7 5 3 10 10 H 1.48500 * 109.46754 * 239.99968 * 7 5 3 11 11 C 1.46498 * 120.00071 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.46974 * 270.00047 * 11 2 1 13 13 O 1.21273 * 119.99801 * 359.97438 * 12 11 2 14 14 N 1.34776 * 119.99807 * 179.97438 * 12 11 2 15 15 C 1.46961 * 120.59344 * 179.97438 * 14 12 11 16 16 C 1.53367 * 108.63788 * 235.24843 * 15 14 12 17 17 N 1.46965 * 108.63366 * 310.57795 * 16 15 14 18 18 C 1.34782 * 120.59158 * 235.19766 * 17 16 15 19 19 O 1.21279 * 120.00185 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99688 * 179.97438 * 18 17 16 21 21 N 1.46896 * 109.46953 * 180.02562 * 20 18 17 22 22 C 1.46897 * 111.00427 * 293.95702 * 21 20 18 23 23 C 1.46900 * 110.99960 * 170.00269 * 21 20 18 24 24 C 1.47204 * 109.47184 * 190.00290 * 23 21 20 25 25 N 9.43940 * 154.66679 * 256.99360 * 14 1 2 26 26 C 1.46963 * 118.81453 * 55.47765 * 17 16 15 27 27 C 1.46965 * 120.59394 * 0.02562 * 14 12 11 28 28 H 1.09003 * 109.46822 * 274.11923 * 1 2 3 29 29 H 1.08997 * 109.47178 * 34.12153 * 1 2 3 30 30 H 1.08999 * 109.46802 * 154.11744 * 1 2 3 31 31 H 0.96999 * 120.00154 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47319 * 149.99601 * 11 2 1 33 33 H 1.08999 * 109.47180 * 29.99840 * 11 2 1 34 34 H 1.09003 * 109.60468 * 115.50346 * 15 14 12 35 35 H 1.08996 * 109.61147 * 354.99648 * 15 14 12 36 36 H 1.09003 * 109.61409 * 190.83404 * 16 15 14 37 37 H 1.09000 * 109.75150 * 70.40853 * 16 15 14 38 38 H 1.09009 * 109.46765 * 60.00858 * 20 18 17 39 39 H 1.08996 * 109.47823 * 300.00548 * 20 18 17 40 40 H 1.09001 * 109.47158 * 296.04554 * 22 21 20 41 41 H 1.09001 * 109.47107 * 56.04295 * 22 21 20 42 42 H 1.08994 * 109.47443 * 176.04516 * 22 21 20 43 43 H 1.08997 * 109.47568 * 310.00259 * 23 21 20 44 44 H 1.09005 * 109.47163 * 70.00240 * 23 21 20 45 45 H 1.09000 * 109.60838 * 64.26367 * 26 17 16 46 46 H 1.08992 * 109.61488 * 184.77418 * 26 17 16 47 47 H 1.08997 * 109.61189 * 244.49228 * 27 14 12 48 48 H 1.09003 * 109.61060 * 4.84022 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5338 2.3429 0.4572 6 7 0.3852 2.2689 1.0955 7 14 2.3354 4.0050 0.1666 8 1 3.6121 3.8172 -0.5682 9 1 1.4239 4.8608 -0.6347 10 1 2.6076 4.6583 1.4721 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 8 2.0550 -1.0220 2.3421 14 7 3.1108 -2.8523 1.6658 15 6 3.3634 -3.2892 3.0461 16 6 4.8705 -3.5125 3.2214 17 7 5.3533 -4.3493 2.1140 18 6 6.0163 -5.4968 2.3598 19 8 6.2188 -5.8472 3.5031 20 6 6.5049 -6.3449 1.2139 21 7 7.1905 -7.5323 1.7412 22 6 8.4220 -7.1582 2.4491 23 6 7.4716 -8.4971 0.6698 24 6 7.9352 -9.7638 1.2592 25 7 8.2983 -10.7383 1.7143 26 6 5.1057 -3.9095 0.7337 27 6 3.5941 -3.6888 0.5584 28 1 -0.3633 0.0738 1.0251 29 1 -0.3633 0.8507 -0.5764 30 1 -0.3633 -0.9246 -0.4486 31 1 -0.0453 3.0773 1.4146 32 1 3.1499 -1.1382 -0.5144 33 1 1.6085 -2.0281 -0.5147 34 1 2.8308 -4.2207 3.2380 35 1 3.0240 -2.5211 3.7409 36 1 5.0579 -4.0167 4.1695 37 1 5.3889 -2.5537 3.2084 38 1 7.1979 -5.7661 0.6032 39 1 5.6564 -6.6563 0.6047 40 1 9.1220 -6.7060 1.7465 41 1 8.1853 -6.4431 3.2370 42 1 8.8727 -8.0477 2.8892 43 1 6.5635 -8.6754 0.0938 44 1 8.2449 -8.0969 0.0141 45 1 5.6382 -2.9772 0.5458 46 1 5.4483 -4.6758 0.0385 47 1 3.0781 -4.6488 0.5729 48 1 3.4044 -3.1857 -0.3899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170778478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:48 Heat of formation + Delta-G solvation = 28.803292 kcal Electronic energy + Delta-G solvation = -29497.673726 eV Core-core repulsion = 25397.450269 eV Total energy + Delta-G solvation = -4100.223457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.67597 -39.28603 -38.09565 -36.85874 -36.08127 -35.09886 -33.84435 -32.03149 -31.12859 -29.70302 -28.69303 -28.00121 -26.62483 -25.79053 -24.23736 -23.55572 -22.48823 -21.30086 -19.85380 -18.74713 -17.97156 -17.30169 -16.83635 -16.60692 -16.36928 -16.20536 -15.75865 -15.49786 -15.40276 -15.07069 -14.65323 -14.46132 -14.21884 -13.73569 -13.62374 -13.45615 -13.35815 -13.13459 -13.02004 -12.87391 -12.64641 -12.43967 -12.28069 -12.07062 -11.92804 -11.86617 -11.64936 -11.53283 -11.31194 -11.19683 -10.87023 -10.68493 -10.39441 -10.04159 -10.01626 -9.91396 -9.24903 -9.08460 -8.99412 -8.51170 -8.16320 -6.79302 -5.71642 -3.18892 2.04986 2.33926 2.37184 2.62960 3.30469 3.37346 3.41701 3.43318 3.46115 3.47119 3.63220 4.07504 4.48201 4.53314 4.55742 4.61436 4.66173 4.69652 4.75556 4.92746 5.04109 5.05886 5.07544 5.26649 5.28174 5.31547 5.48464 5.54648 5.59915 5.66745 5.68452 5.87068 5.94674 6.05742 6.13430 6.16875 6.27410 6.30033 6.69467 6.81413 7.11114 7.13674 7.36655 7.72043 7.82206 7.89031 7.91960 8.36094 8.99545 9.20662 9.82080 10.29145 11.32956 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025329 B = 0.002108 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.181289 B =13279.665648 C =13317.075921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.573 5.573 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.009 3.991 6 N -0.895 5.895 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.135 3.865 12 C 0.473 3.527 13 O -0.502 6.502 14 N -0.632 5.632 15 C 0.097 3.903 16 C 0.101 3.899 17 N -0.610 5.610 18 C 0.516 3.484 19 O -0.523 6.523 20 C 0.038 3.962 21 N -0.523 5.523 22 C 0.013 3.987 23 C 0.148 3.852 24 C 0.214 3.786 25 N -0.424 5.424 26 C 0.089 3.911 27 C 0.099 3.901 28 H 0.034 0.966 29 H 0.049 0.951 30 H -0.004 1.004 31 H 0.252 0.748 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.030 0.970 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.123 0.877 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.641 -18.374 -6.125 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.292 5.292 3 C -0.390 4.390 4 H 0.087 0.913 5 C -0.191 4.191 6 N -0.538 5.538 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.002 3.998 12 C 0.259 3.741 13 O -0.373 6.373 14 N -0.372 5.372 15 C -0.027 4.027 16 C -0.022 4.022 17 N -0.345 5.345 18 C 0.303 3.697 19 O -0.399 6.399 20 C -0.093 4.093 21 N -0.248 5.248 22 C -0.134 4.134 23 C 0.018 3.982 24 C -0.105 4.105 25 N -0.102 5.102 26 C -0.035 4.035 27 C -0.026 4.026 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.014 0.986 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.131 0.869 40 H 0.049 0.951 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.140 0.860 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.110 0.890 47 H 0.085 0.915 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.572 -19.620 -3.937 23.633 hybrid contribution 0.808 1.630 -0.639 1.928 sum 13.380 -17.991 -4.576 22.883 Atomic orbital electron populations 1.20863 0.81863 0.95555 0.99823 1.43914 1.02146 0.99773 1.83398 1.19162 0.98294 0.84837 1.36660 0.91260 1.25098 0.97646 0.98672 0.97649 1.70102 1.17649 1.26931 1.39143 0.86184 0.78645 0.84224 0.77408 1.20292 1.21547 1.21693 1.21050 0.97743 0.90354 0.90667 1.23855 0.76198 0.78421 0.95641 1.90705 1.48413 1.51790 1.46408 1.48756 1.59209 1.24003 1.05235 1.21798 0.94007 1.00756 0.86126 1.22031 0.94772 0.94780 0.90631 1.48074 1.56435 1.22349 1.07659 1.20339 0.78134 0.80636 0.90567 1.90694 1.56058 1.70333 1.22769 1.22036 1.00347 0.91200 0.95707 1.61509 1.25602 1.12406 1.25300 1.22678 0.88941 1.02500 0.99297 1.19559 1.02471 0.84176 0.92028 1.28786 0.93253 0.94534 0.93885 1.81205 1.09345 1.12290 1.07311 1.22333 0.97320 1.01373 0.82432 1.22021 0.92765 0.96076 0.91715 0.94810 0.93214 0.98556 0.93749 0.90970 0.91581 0.92027 0.88126 0.88262 0.90936 0.90864 0.86929 0.95105 0.88609 0.91424 0.85967 0.89774 0.90225 0.88967 0.91463 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 9.01 59.85 0.54 4.57 16 2 N -0.57 -14.11 2.41 -182.50 -0.44 -14.55 16 3 C -0.26 -7.05 9.67 -15.06 -0.15 -7.19 16 4 H 0.07 1.80 7.84 -52.48 -0.41 1.39 16 5 C 0.01 0.25 5.13 -17.43 -0.09 0.16 16 6 N -0.89 -26.61 10.59 55.49 0.59 -26.02 16 7 Si 0.91 21.79 29.57 -169.99 -5.03 16.76 16 8 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 C 0.13 2.49 4.53 -5.19 -0.02 2.47 16 12 C 0.47 9.11 7.77 -10.98 -0.09 9.02 16 13 O -0.50 -12.70 15.84 5.56 0.09 -12.61 16 14 N -0.63 -8.73 2.95 -172.25 -0.51 -9.24 16 15 C 0.10 1.28 6.59 -3.60 -0.02 1.26 16 16 C 0.10 1.13 6.59 -3.60 -0.02 1.11 16 17 N -0.61 -5.49 2.94 -172.25 -0.51 -6.00 16 18 C 0.52 4.74 7.39 -10.98 -0.08 4.66 16 19 O -0.52 -6.90 13.74 5.56 0.08 -6.82 16 20 C 0.04 0.18 3.79 -4.98 -0.02 0.16 16 21 N -0.52 -3.33 4.48 -247.91 -1.11 -4.44 16 22 C 0.01 0.10 9.00 60.06 0.54 0.64 16 23 C 0.15 0.50 5.46 -6.61 -0.04 0.46 16 24 C 0.21 1.60 14.53 -20.79 -0.30 1.30 16 25 N -0.42 -4.62 18.53 42.12 0.78 -3.84 16 26 C 0.09 0.58 6.53 -3.39 -0.02 0.55 16 27 C 0.10 0.84 6.52 -3.39 -0.02 0.82 16 28 H 0.03 0.94 7.42 -51.93 -0.39 0.56 16 29 H 0.05 1.29 7.18 -51.93 -0.37 0.92 16 30 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.07 1.18 7.61 -51.93 -0.40 0.78 16 33 H 0.07 1.02 7.63 -51.93 -0.40 0.62 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.58 6.99 -51.93 -0.36 1.22 16 36 H 0.10 1.16 6.99 -51.93 -0.36 0.80 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.19 7.88 -51.92 -0.41 -0.22 16 39 H 0.11 0.26 7.52 -51.93 -0.39 -0.13 16 40 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.10 0.92 5.83 -51.93 -0.30 0.62 16 42 H 0.07 0.54 7.29 -51.93 -0.38 0.16 16 43 H 0.12 0.09 7.93 -51.93 -0.41 -0.32 16 44 H 0.08 0.07 8.12 -51.93 -0.42 -0.35 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.23 5.91 -51.93 -0.31 -0.07 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.10 0.74 5.91 -51.93 -0.31 0.43 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -39.36 389.81 -7.25 -46.61 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -7.27 Total: -5.72 kcal Atomic # 6 Polarization: 19.79 SS G_CDS: 0.21 Total: 19.99 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -1.20 Total: -64.09 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.16 Total: -19.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.36 -7.25 -46.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.409 kcal (2) G-P(sol) polarization free energy of solvation -39.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds