Wall clock time and date at job start Tue Mar 31 2020 21:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 119.99796 * 2 1 4 4 H 1.08003 * 120.00236 * 202.35154 * 3 2 1 5 5 C 1.38815 * 120.00155 * 22.35495 * 3 2 1 6 6 N 1.31614 * 120.00064 * 11.43559 * 5 3 2 7 7 Si 1.86802 * 119.99926 * 191.43942 * 5 3 2 8 8 H 1.48503 * 109.47184 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47287 * 119.99985 * 7 5 3 10 10 H 1.48500 * 109.46754 * 239.99968 * 7 5 3 11 11 C 1.46498 * 120.00071 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.46974 * 270.00047 * 11 2 1 13 13 O 1.21273 * 119.99801 * 359.97438 * 12 11 2 14 14 N 1.34776 * 119.99807 * 179.97438 * 12 11 2 15 15 C 1.46961 * 120.59344 * 179.97438 * 14 12 11 16 16 C 1.53367 * 108.63788 * 235.24843 * 15 14 12 17 17 N 1.46965 * 108.63366 * 310.57795 * 16 15 14 18 18 C 1.34782 * 120.59158 * 235.19766 * 17 16 15 19 19 O 1.21279 * 120.00185 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99688 * 179.97438 * 18 17 16 21 21 N 1.46896 * 109.46953 * 180.02562 * 20 18 17 22 22 C 1.46897 * 111.00427 * 293.95702 * 21 20 18 23 23 C 1.46900 * 110.99960 * 170.00269 * 21 20 18 24 24 C 1.47204 * 109.47184 * 190.00290 * 23 21 20 25 25 N 9.43940 * 154.66679 * 256.99360 * 14 1 2 26 26 C 1.46963 * 118.81453 * 55.47765 * 17 16 15 27 27 C 1.46965 * 120.59394 * 0.02562 * 14 12 11 28 28 H 1.09003 * 109.46822 * 274.11923 * 1 2 3 29 29 H 1.08997 * 109.47178 * 34.12153 * 1 2 3 30 30 H 1.08999 * 109.46802 * 154.11744 * 1 2 3 31 31 H 0.96999 * 120.00154 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47319 * 149.99601 * 11 2 1 33 33 H 1.08999 * 109.47180 * 29.99840 * 11 2 1 34 34 H 1.09003 * 109.60468 * 115.50346 * 15 14 12 35 35 H 1.08996 * 109.61147 * 354.99648 * 15 14 12 36 36 H 1.09003 * 109.61409 * 190.83404 * 16 15 14 37 37 H 1.09000 * 109.75150 * 70.40853 * 16 15 14 38 38 H 1.09009 * 109.46765 * 60.00858 * 20 18 17 39 39 H 1.08996 * 109.47823 * 300.00548 * 20 18 17 40 40 H 1.09001 * 109.47158 * 296.04554 * 22 21 20 41 41 H 1.09001 * 109.47107 * 56.04295 * 22 21 20 42 42 H 1.08994 * 109.47443 * 176.04516 * 22 21 20 43 43 H 1.08997 * 109.47568 * 310.00259 * 23 21 20 44 44 H 1.09005 * 109.47163 * 70.00240 * 23 21 20 45 45 H 1.09000 * 109.60838 * 64.26367 * 26 17 16 46 46 H 1.08992 * 109.61488 * 184.77418 * 26 17 16 47 47 H 1.08997 * 109.61189 * 244.49228 * 27 14 12 48 48 H 1.09003 * 109.61060 * 4.84022 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5338 2.3429 0.4572 6 7 0.3852 2.2689 1.0955 7 14 2.3354 4.0050 0.1666 8 1 3.6121 3.8172 -0.5682 9 1 1.4239 4.8608 -0.6347 10 1 2.6076 4.6583 1.4721 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 8 2.0550 -1.0220 2.3421 14 7 3.1108 -2.8523 1.6658 15 6 3.3634 -3.2892 3.0461 16 6 4.8705 -3.5125 3.2214 17 7 5.3533 -4.3493 2.1140 18 6 6.0163 -5.4968 2.3598 19 8 6.2188 -5.8472 3.5031 20 6 6.5049 -6.3449 1.2139 21 7 7.1905 -7.5323 1.7412 22 6 8.4220 -7.1582 2.4491 23 6 7.4716 -8.4971 0.6698 24 6 7.9352 -9.7638 1.2592 25 7 8.2983 -10.7383 1.7143 26 6 5.1057 -3.9095 0.7337 27 6 3.5941 -3.6888 0.5584 28 1 -0.3633 0.0738 1.0251 29 1 -0.3633 0.8507 -0.5764 30 1 -0.3633 -0.9246 -0.4486 31 1 -0.0453 3.0773 1.4146 32 1 3.1499 -1.1382 -0.5144 33 1 1.6085 -2.0281 -0.5147 34 1 2.8308 -4.2207 3.2380 35 1 3.0240 -2.5211 3.7409 36 1 5.0579 -4.0167 4.1695 37 1 5.3889 -2.5537 3.2084 38 1 7.1979 -5.7661 0.6032 39 1 5.6564 -6.6563 0.6047 40 1 9.1220 -6.7060 1.7465 41 1 8.1853 -6.4431 3.2370 42 1 8.8727 -8.0477 2.8892 43 1 6.5635 -8.6754 0.0938 44 1 8.2449 -8.0969 0.0141 45 1 5.6382 -2.9772 0.5458 46 1 5.4483 -4.6758 0.0385 47 1 3.0781 -4.6488 0.5729 48 1 3.4044 -3.1857 -0.3899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170778478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:47 Heat of formation + Delta-G solvation = -2.331580 kcal Electronic energy + Delta-G solvation = -29499.023836 eV Core-core repulsion = 25397.450269 eV Total energy + Delta-G solvation = -4101.573566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.46305 -40.42306 -38.74694 -37.87137 -36.90864 -36.68459 -34.92443 -33.38516 -32.58762 -30.17932 -29.46332 -28.99744 -27.95955 -27.59948 -25.08183 -24.23339 -23.74642 -22.63447 -20.81738 -19.47869 -18.80499 -18.75615 -18.01954 -17.41219 -17.20708 -16.97180 -16.79835 -16.44819 -16.25506 -16.19308 -15.95552 -15.31437 -15.10040 -14.99792 -14.78105 -14.71104 -14.35556 -14.12594 -13.95274 -13.67487 -13.61536 -13.40945 -13.29825 -13.04417 -12.81805 -12.75041 -12.59835 -12.50786 -12.41723 -12.38565 -12.29395 -12.26114 -12.12723 -11.98611 -11.81302 -10.81841 -10.73898 -10.47229 -10.14605 -9.34723 -9.20020 -8.76066 -7.78015 -5.26994 1.46805 1.48373 1.53642 1.58516 1.70629 1.87740 1.92337 2.00368 2.32317 2.54447 2.98846 3.25819 3.38331 3.54956 3.73917 3.83596 3.92222 4.17566 4.25277 4.30768 4.34392 4.36306 4.45226 4.49347 4.54301 4.60411 4.66328 4.68449 4.73908 4.74417 4.75363 4.79857 4.85534 4.87937 5.11416 5.14197 5.34754 5.45664 5.64426 5.72109 5.79448 5.82489 5.91571 6.31991 6.47618 6.65132 6.66134 7.16839 7.27663 7.56516 7.90080 8.30407 9.26031 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025329 B = 0.002108 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.181289 B =13279.665648 C =13317.075921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.594 5.594 3 C -0.256 4.256 4 H 0.082 0.918 5 C -0.059 4.059 6 N -0.937 5.937 7 Si 0.968 3.032 8 H -0.256 1.256 9 H -0.289 1.289 10 H -0.304 1.304 11 C 0.132 3.868 12 C 0.472 3.528 13 O -0.579 6.579 14 N -0.621 5.621 15 C 0.103 3.897 16 C 0.112 3.888 17 N -0.611 5.611 18 C 0.510 3.490 19 O -0.573 6.573 20 C 0.044 3.956 21 N -0.550 5.550 22 C 0.020 3.980 23 C 0.150 3.850 24 C 0.239 3.761 25 N -0.500 5.500 26 C 0.091 3.909 27 C 0.086 3.914 28 H -0.013 1.013 29 H 0.024 0.976 30 H 0.038 0.962 31 H 0.243 0.757 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.153 0.847 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.162 0.838 44 H 0.124 0.876 45 H 0.077 0.923 46 H 0.149 0.851 47 H 0.092 0.908 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.583 -20.288 -10.347 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.314 5.314 3 C -0.387 4.387 4 H 0.099 0.901 5 C -0.254 4.254 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.180 1.180 9 H -0.216 1.216 10 H -0.232 1.232 11 C 0.002 3.998 12 C 0.260 3.740 13 O -0.456 6.456 14 N -0.358 5.358 15 C -0.022 4.022 16 C -0.013 4.013 17 N -0.345 5.345 18 C 0.299 3.701 19 O -0.452 6.452 20 C -0.085 4.085 21 N -0.276 5.276 22 C -0.128 4.128 23 C 0.021 3.979 24 C -0.079 4.079 25 N -0.178 5.178 26 C -0.032 4.032 27 C -0.036 4.036 28 H 0.006 0.994 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.171 0.829 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.179 0.821 44 H 0.141 0.859 45 H 0.096 0.904 46 H 0.166 0.834 47 H 0.110 0.890 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.588 -21.631 -8.242 27.361 hybrid contribution 0.267 2.036 0.672 2.161 sum 14.855 -19.594 -7.570 25.728 Atomic orbital electron populations 1.20543 0.82665 0.96467 0.96957 1.44088 1.02199 1.01351 1.83753 1.19604 0.98456 0.86002 1.34591 0.90065 1.25930 0.98553 1.02361 0.98536 1.70316 1.19544 1.26980 1.41532 0.85185 0.78541 0.80010 0.76584 1.17965 1.21585 1.23179 1.21334 0.99262 0.88832 0.90410 1.23644 0.76057 0.79255 0.95070 1.90699 1.51947 1.54733 1.48264 1.48558 1.57342 1.22892 1.07051 1.21708 0.95536 0.99742 0.85211 1.21659 0.93059 0.94770 0.91776 1.48163 1.56230 1.22117 1.07975 1.21317 0.77012 0.80413 0.91333 1.90694 1.57732 1.71410 1.25331 1.22176 1.02265 0.90285 0.93794 1.61330 1.25329 1.13740 1.27193 1.22499 0.90056 1.00946 0.99320 1.20000 1.05446 0.81333 0.91170 1.29723 0.91306 0.94685 0.92151 1.81226 1.12073 1.14970 1.09565 1.22587 0.95543 1.03333 0.81696 1.22541 0.94517 0.96279 0.90254 0.99419 0.95741 0.94322 0.94768 0.87855 0.87480 0.91014 0.91780 0.89320 0.92112 0.87148 0.82937 0.92656 0.91706 0.93318 0.82105 0.85910 0.90441 0.83352 0.88995 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.91 9.01 127.77 1.15 10.06 16 2 N -0.59 -28.77 2.41 -731.30 -1.76 -30.54 16 3 C -0.26 -13.79 9.67 84.03 0.81 -12.98 16 4 H 0.08 4.07 7.84 -2.91 -0.02 4.05 16 5 C -0.06 -3.38 5.13 84.86 0.44 -2.94 16 6 N -0.94 -58.27 10.59 21.65 0.23 -58.04 16 7 Si 0.97 45.55 29.57 68.60 2.03 47.58 16 8 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 9 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 10 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 11 C 0.13 4.49 4.53 85.63 0.39 4.88 16 12 C 0.47 17.74 7.77 87.66 0.68 18.42 16 13 O -0.58 -30.41 15.84 -3.01 -0.05 -30.45 16 14 N -0.62 -15.82 2.95 -817.26 -2.41 -18.23 16 15 C 0.10 2.69 6.59 86.41 0.57 3.26 16 16 C 0.11 2.46 6.59 86.41 0.57 3.03 16 17 N -0.61 -8.89 2.94 -817.25 -2.40 -11.29 16 18 C 0.51 7.63 7.39 87.66 0.65 8.28 16 19 O -0.57 -14.65 13.74 -3.03 -0.04 -14.69 16 20 C 0.04 0.15 3.79 85.56 0.32 0.47 16 21 N -0.55 -4.64 4.48 -938.25 -4.20 -8.84 16 22 C 0.02 0.24 9.00 127.69 1.15 1.39 16 23 C 0.15 0.19 5.46 84.50 0.46 0.65 16 24 C 0.24 3.00 14.53 89.45 1.30 4.30 16 25 N -0.50 -10.65 18.53 20.00 0.37 -10.28 16 26 C 0.09 0.63 6.53 86.55 0.57 1.20 16 27 C 0.09 1.00 6.52 86.55 0.56 1.56 16 28 H -0.01 -0.74 7.42 -2.39 -0.02 -0.76 16 29 H 0.02 1.29 7.18 -2.39 -0.02 1.27 16 30 H 0.04 1.54 7.84 -2.39 -0.02 1.53 16 31 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.10 2.88 7.61 -2.39 -0.02 2.86 16 33 H 0.11 2.76 7.63 -2.39 -0.02 2.74 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 2.17 6.99 -2.39 -0.02 2.16 16 36 H 0.09 2.16 6.99 -2.39 -0.02 2.14 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 -0.34 7.88 -2.38 -0.02 -0.36 16 39 H 0.15 -0.64 7.52 -2.39 -0.02 -0.66 16 40 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 41 H 0.06 1.22 5.83 -2.39 -0.01 1.20 16 42 H 0.05 0.75 7.29 -2.39 -0.02 0.73 16 43 H 0.16 -0.95 7.93 -2.39 -0.02 -0.97 16 44 H 0.12 -0.66 8.12 -2.38 -0.02 -0.68 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.15 -0.56 5.91 -2.39 -0.01 -0.58 16 47 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.12 0.97 5.91 -2.39 -0.01 0.96 16 Total: -1.00 -98.15 389.81 2.35 -95.80 By element: Atomic # 1 Polarization: -3.58 SS G_CDS: 0.97 Total: -2.60 kcal Atomic # 6 Polarization: 31.97 SS G_CDS: 9.62 Total: 41.59 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -10.18 Total: -137.22 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.09 Total: -45.15 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -98.15 2.35 -95.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.469 kcal (2) G-P(sol) polarization free energy of solvation -98.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds