Wall clock time and date at job start Tue Mar 31 2020 20:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35843 * 126.06436 * 2 1 4 4 C 1.35719 * 107.56856 * 180.02562 * 3 2 1 5 5 N 1.40845 * 126.07734 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99873 * 179.97438 * 5 4 3 7 7 O 1.21597 * 120.00423 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99964 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99635 * 0.02562 * 8 6 5 10 10 C 1.50694 * 109.47248 * 90.00174 * 9 8 6 11 11 H 1.07999 * 119.99904 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00385 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00419 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99411 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47279 * 90.00270 * 14 12 10 16 16 H 1.48505 * 109.46775 * 209.99777 * 14 12 10 17 17 H 1.48495 * 109.47628 * 329.99523 * 14 12 10 18 18 C 1.46493 * 119.99864 * 179.73002 * 8 6 5 19 19 C 1.53000 * 109.47637 * 90.00039 * 18 8 6 20 20 N 1.46896 * 109.47529 * 179.97438 * 19 18 8 21 21 C 1.47011 * 111.00062 * 293.63441 * 20 19 18 22 22 C 1.53092 * 109.26074 * 177.60605 * 21 20 19 23 23 O 1.43021 * 109.26045 * 56.84909 * 22 21 20 24 24 C 1.43023 * 113.73441 * 301.33200 * 23 22 21 25 25 C 1.47012 * 110.99893 * 169.99740 * 20 19 18 26 26 C 1.40239 * 107.85042 * 0.23953 * 4 3 2 27 27 N 1.30846 * 108.33884 * 359.59446 * 26 4 3 28 28 H 1.09005 * 109.46859 * 89.99764 * 1 2 3 29 29 H 1.08995 * 109.47245 * 210.00140 * 1 2 3 30 30 H 1.08993 * 109.46954 * 330.00077 * 1 2 3 31 31 H 1.08004 * 126.21214 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00239 * 0.02562 * 5 4 3 33 33 H 1.09003 * 109.47006 * 210.00121 * 9 8 6 34 34 H 1.09004 * 109.47665 * 329.99813 * 9 8 6 35 35 H 0.96993 * 119.99970 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47192 * 209.99937 * 18 8 6 37 37 H 1.08996 * 109.47342 * 329.99648 * 18 8 6 38 38 H 1.09002 * 109.46747 * 300.00171 * 19 18 8 39 39 H 1.08996 * 109.47074 * 59.99445 * 19 18 8 40 40 H 1.09006 * 109.50562 * 297.54216 * 21 20 19 41 41 H 1.09007 * 109.50681 * 57.66859 * 21 20 19 42 42 H 1.08997 * 109.50787 * 296.91408 * 22 21 20 43 43 H 1.09005 * 109.54473 * 176.80322 * 22 21 20 44 44 H 1.08997 * 109.50650 * 298.73497 * 24 23 22 45 45 H 1.08999 * 109.53993 * 178.62029 * 24 23 22 46 46 H 1.09001 * 109.51003 * 302.32777 * 25 20 19 47 47 H 1.09002 * 109.50690 * 62.41612 * 25 20 19 48 48 H 1.07998 * 125.83294 * 179.73187 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2647 1.0981 0.0000 4 6 3.5518 0.6675 -0.0006 5 7 4.6995 1.4840 -0.0013 6 6 5.9252 0.9235 -0.0013 7 8 6.0403 -0.2870 -0.0012 8 7 7.0235 1.7047 -0.0014 9 6 6.8849 3.1631 -0.0010 10 6 6.8378 3.6629 1.4198 11 1 6.9041 2.9640 2.2405 12 6 6.7102 5.0124 1.6722 13 7 6.6686 5.4484 2.9122 14 14 6.5948 6.2211 0.2526 15 1 5.1705 6.4094 -0.1227 16 1 7.1748 7.5248 0.6643 17 1 7.3476 5.6902 -0.9121 18 6 8.3557 1.0955 0.0045 19 6 8.8235 0.8777 -1.4358 20 7 10.1597 0.2673 -1.4298 21 6 11.1599 1.1943 -0.8808 22 6 12.5230 0.4988 -0.8375 23 8 12.8652 0.0492 -2.1514 24 6 11.9127 -0.8559 -2.7164 25 6 10.5433 -0.1740 -2.7786 26 6 3.5360 -0.7347 -0.0065 27 7 2.2895 -1.1324 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.9359 2.1269 -0.0004 32 1 4.6078 2.4496 -0.0010 33 1 7.7364 3.6091 -0.5151 34 1 5.9644 3.4408 -0.5145 35 1 6.5785 6.3977 3.0897 36 1 9.0549 1.7558 0.5176 37 1 8.3147 0.1371 0.5221 38 1 8.1243 0.2174 -1.9489 39 1 8.8645 1.8360 -1.9534 40 1 11.2226 2.0791 -1.5144 41 1 10.8689 1.4881 0.1279 42 1 12.4746 -0.3551 -0.1618 43 1 13.2791 1.2000 -0.4844 44 1 11.8466 -1.7491 -2.0952 45 1 12.2267 -1.1344 -3.7223 46 1 9.8024 -0.8791 -3.1555 47 1 10.5955 0.6888 -3.4428 48 1 4.4044 -1.3768 -0.0125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176813170.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:41 Heat of formation + Delta-G solvation = 10.585850 kcal Electronic energy + Delta-G solvation = -29789.457228 eV Core-core repulsion = 25688.443804 eV Total energy + Delta-G solvation = -4101.013425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.28017 -41.02768 -40.39656 -37.56845 -36.42113 -35.73984 -34.53952 -33.63561 -32.19305 -31.41189 -30.28195 -29.43320 -27.52569 -26.66705 -25.00519 -24.53675 -23.62534 -22.49879 -21.88716 -21.33521 -20.42254 -19.07563 -18.87492 -18.28612 -17.68420 -17.13988 -16.91468 -16.63308 -16.30270 -16.23743 -15.97548 -15.95799 -15.90699 -15.33316 -15.26269 -14.90331 -14.61041 -14.46683 -14.17543 -13.84006 -13.79504 -13.54877 -13.41768 -13.36436 -13.16633 -12.91623 -12.50197 -12.44051 -12.30011 -12.11020 -11.82611 -11.79225 -11.71145 -11.66426 -11.43930 -11.03486 -10.78219 -10.69153 -10.30221 -9.61079 -9.39174 -8.54080 -8.28912 -6.37844 0.84222 1.39970 1.42871 1.48945 1.52690 1.64104 1.89034 2.34267 2.44947 2.75072 2.96399 3.04371 3.15776 3.80069 3.85135 3.92978 4.00911 4.01150 4.10988 4.21202 4.32161 4.36720 4.40355 4.48129 4.51637 4.56949 4.60694 4.63607 4.74075 4.75122 4.76735 4.77353 4.81463 4.83498 4.92637 5.00878 5.04498 5.25432 5.41574 5.59575 5.83919 5.91349 5.94784 6.07630 6.16077 6.18087 6.24725 6.67029 6.69263 6.99876 7.28732 7.63300 8.87372 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008099 B = 0.003752 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3456.199810 B = 7461.578547 C =10323.639423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.374 5.374 3 C 0.025 3.975 4 C 0.000 4.000 5 N -0.651 5.651 6 C 0.707 3.293 7 O -0.620 6.620 8 N -0.608 5.608 9 C 0.221 3.779 10 C -0.541 4.541 11 H 0.028 0.972 12 C 0.023 3.977 13 N -0.940 5.940 14 Si 0.940 3.060 15 H -0.255 1.255 16 H -0.289 1.289 17 H -0.242 1.242 18 C 0.147 3.853 19 C 0.060 3.940 20 N -0.541 5.541 21 C 0.011 3.989 22 C 0.066 3.934 23 O -0.403 6.403 24 C 0.065 3.935 25 C 0.018 3.982 26 C 0.032 3.968 27 N -0.315 5.315 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.213 0.787 32 H 0.416 0.584 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.268 0.732 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.039 0.961 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.115 0.885 44 H 0.061 0.939 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.039 0.961 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 -6.025 -12.257 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.160 5.160 3 C -0.124 4.124 4 C -0.105 4.105 5 N -0.300 5.300 6 C 0.409 3.591 7 O -0.502 6.502 8 N -0.342 5.342 9 C 0.099 3.901 10 C -0.580 4.580 11 H 0.046 0.954 12 C -0.177 4.177 13 N -0.579 5.579 14 Si 0.762 3.238 15 H -0.179 1.179 16 H -0.215 1.215 17 H -0.165 1.165 18 C 0.023 3.977 19 C -0.069 4.069 20 N -0.267 5.267 21 C -0.117 4.117 22 C -0.010 4.010 23 O -0.322 6.322 24 C -0.012 4.012 25 C -0.110 4.110 26 C -0.154 4.154 27 N -0.139 5.139 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.133 0.867 31 H 0.230 0.770 32 H 0.255 0.745 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.137 0.863 46 H 0.111 0.889 47 H 0.057 0.943 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.707 -8.045 -11.942 14.652 hybrid contribution 0.289 2.597 -0.106 2.616 sum -2.417 -5.448 -12.048 13.442 Atomic orbital electron populations 1.22213 0.71021 1.06025 1.04806 1.48647 1.07779 1.02498 1.57051 1.22349 0.88419 0.95033 1.06574 1.17851 0.86696 0.90888 1.15057 1.41964 1.02072 1.09692 1.76256 1.15825 0.80871 0.84713 0.77725 1.90697 1.85901 1.13131 1.60429 1.46987 1.04398 1.06969 1.75811 1.19569 0.98187 0.76686 0.95692 1.21486 1.51684 0.92756 0.92067 0.95402 1.25775 0.93640 1.00052 0.98183 1.70057 1.50693 1.15655 1.21541 0.85835 0.80151 0.78018 0.79754 1.17938 1.21472 1.16548 1.21078 0.81805 0.98450 0.96350 1.22265 0.90041 0.97630 0.96996 1.62108 1.01623 1.39871 1.23111 1.22920 0.93190 0.94245 1.01328 1.22743 0.94929 0.99130 0.84229 1.87944 1.47688 1.64575 1.31961 1.22786 0.86480 0.91595 1.00309 1.22844 0.99041 1.00198 0.88875 1.24284 0.95285 0.94295 1.01552 1.77242 1.01315 1.10004 1.25304 0.89167 0.89009 0.86704 0.77018 0.74516 0.93497 0.93980 0.92253 0.90570 0.91243 0.91189 0.94609 0.94274 0.89364 0.91955 0.86729 0.92032 0.86297 0.88910 0.94264 0.79611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.36 11.48 127.77 1.47 2.83 16 2 N -0.37 -9.66 4.04 -368.48 -1.49 -11.15 16 3 C 0.02 0.66 11.56 83.49 0.97 1.63 16 4 C 0.00 0.01 6.90 37.59 0.26 0.27 16 5 N -0.65 -24.16 5.34 -317.70 -1.70 -25.86 16 6 C 0.71 29.31 8.25 179.05 1.48 30.79 16 7 O -0.62 -27.76 13.08 -4.02 -0.05 -27.81 16 8 N -0.61 -24.20 2.46 -844.21 -2.07 -26.27 16 9 C 0.22 9.03 3.99 85.63 0.34 9.37 16 10 C -0.54 -27.71 9.94 25.60 0.25 -27.46 16 11 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 12 C 0.02 1.18 5.47 84.66 0.46 1.64 16 13 N -0.94 -54.10 13.96 21.45 0.30 -53.80 16 14 Si 0.94 37.63 27.47 68.60 1.88 39.51 16 15 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 16 H -0.29 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.24 -8.75 6.54 99.48 0.65 -8.10 16 18 C 0.15 5.29 5.34 86.38 0.46 5.75 16 19 C 0.06 1.82 5.28 86.30 0.46 2.28 16 20 N -0.54 -14.53 4.73 -895.22 -4.23 -18.76 16 21 C 0.01 0.28 5.44 86.31 0.47 0.75 16 22 C 0.07 1.43 7.01 72.01 0.50 1.93 16 23 O -0.40 -9.43 10.83 -148.98 -1.61 -11.05 16 24 C 0.06 1.27 7.01 72.02 0.50 1.77 16 25 C 0.02 0.41 5.65 86.32 0.49 0.90 16 26 C 0.03 1.18 10.84 85.33 0.92 2.11 16 27 N -0.31 -10.60 12.57 -56.77 -0.71 -11.31 16 28 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.21 3.84 8.06 -2.91 -0.02 3.81 16 32 H 0.42 14.52 6.56 -92.71 -0.61 13.92 16 33 H 0.05 1.84 7.13 -2.39 -0.02 1.83 16 34 H 0.04 1.57 5.79 -2.38 -0.01 1.56 16 35 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.08 2.75 6.44 -2.39 -0.02 2.73 16 37 H 0.07 2.71 7.42 -2.39 -0.02 2.70 16 38 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 39 H 0.04 1.08 8.12 -2.39 -0.02 1.06 16 40 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.09 2.28 6.38 -2.38 -0.02 2.26 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 45 H 0.12 1.72 8.14 -2.39 -0.02 1.71 16 46 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 47 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.19 7.54 5.91 -2.91 -0.02 7.52 16 Total: -1.00 -71.75 386.96 -0.34 -72.09 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: 0.31 Total: 39.85 kcal Atomic # 6 Polarization: 25.53 SS G_CDS: 9.04 Total: 34.56 kcal Atomic # 7 Polarization: -137.25 SS G_CDS: -9.90 Total: -147.15 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.67 Total: -38.86 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 1.88 Total: 39.51 kcal Total: -71.75 -0.34 -72.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176813170.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.675 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds