Wall clock time and date at job start Tue Mar 31 2020 21:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35538 * 117.00656 * 2 1 4 4 C 1.38998 * 120.47663 * 180.02562 * 3 2 1 5 5 C 1.39126 * 118.29127 * 180.02562 * 4 3 2 6 6 N 1.39065 * 120.48751 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99912 * 174.83914 * 6 5 4 8 8 O 1.21576 * 119.99921 * 5.08247 * 7 6 5 9 9 N 1.34773 * 120.00237 * 185.08026 * 7 6 5 10 10 C 1.46504 * 119.99734 * 0.02562 * 9 7 6 11 11 C 1.50699 * 109.47269 * 89.99989 * 10 9 7 12 12 H 1.07995 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00004 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99826 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00251 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46815 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47104 * 119.99748 * 15 13 11 18 18 H 1.48501 * 109.46696 * 240.00005 * 15 13 11 19 19 C 1.46498 * 120.00144 * 180.02562 * 9 7 6 20 20 C 1.53004 * 109.46934 * 90.00415 * 19 9 7 21 21 C 1.53006 * 109.47018 * 180.02562 * 20 19 9 22 22 N 1.46893 * 109.46844 * 179.97438 * 21 20 19 23 23 C 1.46902 * 110.99822 * 169.99592 * 22 21 20 24 24 C 1.46902 * 111.00045 * 293.94879 * 22 21 20 25 25 N 1.33088 * 119.02097 * 359.97438 * 5 4 3 26 26 C 1.31716 * 120.85370 * 359.97438 * 25 5 4 27 27 N 1.31783 * 121.88912 * 0.02562 * 26 25 5 28 28 H 1.08997 * 109.47471 * 299.99984 * 1 2 3 29 29 H 1.09005 * 109.47019 * 59.99769 * 1 2 3 30 30 H 1.08999 * 109.47643 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.85510 * 359.74674 * 4 3 2 32 32 H 0.96991 * 120.00102 * 354.84081 * 6 5 4 33 33 H 1.09006 * 109.46784 * 209.99784 * 10 9 7 34 34 H 1.08997 * 109.47100 * 329.99465 * 10 9 7 35 35 H 0.97004 * 120.00148 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.47386 * 210.00223 * 19 9 7 37 37 H 1.09002 * 109.47374 * 330.00512 * 19 9 7 38 38 H 1.09006 * 109.46783 * 299.99550 * 20 19 9 39 39 H 1.08995 * 109.47316 * 60.00111 * 20 19 9 40 40 H 1.08998 * 109.46655 * 299.99590 * 21 20 19 41 41 H 1.08995 * 109.47171 * 59.99796 * 21 20 19 42 42 H 1.09003 * 109.46910 * 60.00421 * 23 22 21 43 43 H 1.09005 * 109.47214 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.47382 * 300.00114 * 23 22 21 45 45 H 1.09003 * 109.46803 * 60.00706 * 24 22 21 46 46 H 1.09005 * 109.46696 * 179.97438 * 24 22 21 47 47 H 1.08994 * 109.47577 * 300.00163 * 24 22 21 48 48 H 1.08001 * 119.06129 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 3.4318 1.2917 -0.0005 5 6 4.0159 2.5545 0.0000 6 7 5.3997 2.6918 0.0001 7 6 5.9555 3.9152 -0.1044 8 8 5.2500 4.9053 -0.1055 9 7 7.2934 4.0410 -0.2075 10 6 8.1435 2.8478 -0.2066 11 6 8.3329 2.3649 -1.6215 12 1 7.8663 2.8935 -2.4395 13 6 9.1010 1.2475 -1.8716 14 7 9.6687 0.6035 -0.8753 15 14 9.3352 0.6484 -3.6253 16 1 8.5974 1.5403 -4.5557 17 1 10.7806 0.6646 -3.9651 18 1 8.8130 -0.7363 -3.7492 19 6 7.8975 5.3708 -0.3204 20 6 8.2116 5.9086 1.0771 21 6 8.8420 7.2978 0.9592 22 7 9.1430 7.8143 2.3009 23 6 9.9597 9.0330 2.2249 24 6 7.9094 8.0539 3.0618 25 7 3.2306 3.6290 0.0005 26 6 1.9191 3.5072 0.0000 27 7 1.3293 2.3287 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.0408 0.3998 0.0031 32 1 5.9649 1.9071 0.0752 33 1 9.1133 3.0931 0.2265 34 1 7.6694 2.0643 0.3844 35 1 10.2094 -0.1825 -1.0512 36 1 8.8186 5.3035 -0.8993 37 1 7.2022 6.0445 -0.8212 38 1 7.2904 5.9760 1.6559 39 1 8.9070 5.2350 1.5778 40 1 9.7631 7.2307 0.3802 41 1 8.1464 7.9712 0.4586 42 1 9.4187 9.7988 1.6688 43 1 10.1676 9.3946 3.2320 44 1 10.8982 8.8104 1.7174 45 1 7.3576 7.1193 3.1628 46 1 8.1612 8.4355 4.0513 47 1 7.2942 8.7841 2.5361 48 1 1.3095 4.3987 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182140076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:31 Heat of formation + Delta-G solvation = 7.533504 kcal Electronic energy + Delta-G solvation = -29408.426542 eV Core-core repulsion = 25307.280758 eV Total energy + Delta-G solvation = -4101.145784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.12412 -39.67638 -38.31311 -37.59988 -35.53111 -34.75098 -32.93088 -32.19917 -31.60138 -30.59225 -27.61104 -27.46976 -27.46715 -25.90116 -24.24457 -23.60356 -23.05825 -22.17227 -20.66097 -19.76778 -18.91910 -17.46722 -17.19733 -16.62298 -16.16592 -15.96532 -15.46926 -15.40990 -15.19111 -15.10259 -14.78464 -14.65129 -14.53210 -14.26842 -13.92697 -13.84566 -13.63859 -12.98329 -12.61681 -12.38717 -12.20663 -12.10494 -11.82041 -11.75079 -11.68606 -11.44572 -11.38191 -11.21326 -10.96083 -10.91024 -10.81950 -10.54192 -10.30035 -10.12870 -9.81203 -9.74800 -9.19052 -8.79792 -8.64465 -8.47537 -8.33295 -7.74939 -6.27176 -4.36044 1.17730 1.44130 2.68314 3.17111 3.22293 3.26583 3.31580 3.68878 3.96572 4.16130 4.22726 4.26491 4.30428 4.76578 5.05891 5.09366 5.11359 5.14611 5.16344 5.19648 5.29824 5.39091 5.39689 5.46623 5.56467 5.64937 5.66195 5.71398 5.77753 5.79975 5.89522 6.01527 6.06063 6.17289 6.43989 6.56880 6.68827 6.73531 6.99145 7.01384 7.05155 7.09166 7.12548 7.34230 7.62430 7.68559 7.93690 8.27402 8.51513 8.75542 9.17231 9.34205 10.78796 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007022 B = 0.003837 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3986.490279 B = 7295.910390 C =10738.176677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.303 6.303 3 C 0.378 3.622 4 C -0.292 4.292 5 C 0.460 3.540 6 N -0.651 5.651 7 C 0.699 3.301 8 O -0.553 6.553 9 N -0.607 5.607 10 C 0.238 3.762 11 C -0.543 4.543 12 H 0.063 0.937 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.141 3.859 20 C -0.130 4.130 21 C 0.059 3.941 22 N -0.548 5.548 23 C 0.025 3.975 24 C 0.022 3.978 25 N -0.528 5.528 26 C 0.356 3.644 27 N -0.609 5.609 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.427 0.573 33 H 0.044 0.956 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.024 0.976 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.123 5.931 4.917 11.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.194 3.806 4 C -0.320 4.320 5 C 0.220 3.780 6 N -0.300 5.300 7 C 0.400 3.600 8 O -0.427 6.427 9 N -0.341 5.341 10 C 0.118 3.882 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.527 5.527 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.017 3.983 20 C -0.170 4.170 21 C -0.069 4.069 22 N -0.272 5.272 23 C -0.123 4.123 24 C -0.126 4.126 25 N -0.253 5.253 26 C 0.067 3.933 27 N -0.343 5.343 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.170 0.830 32 H 0.269 0.731 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.043 0.957 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -9.469 6.646 5.187 12.678 hybrid contribution 0.419 -1.010 -1.357 1.743 sum -9.050 5.635 3.830 11.328 Atomic orbital electron populations 1.22884 0.77011 1.02922 1.02648 1.86220 1.23057 1.24295 1.87192 1.19560 0.88620 0.84837 0.87631 1.21035 0.93334 0.98760 1.18857 1.18113 0.85051 0.88257 0.86541 1.43042 1.03087 1.11334 1.72494 1.15886 0.82956 0.82604 0.78549 1.90951 1.60706 1.35395 1.55635 1.47441 1.03723 1.08798 1.74134 1.19389 0.90554 0.80918 0.97380 1.21560 1.31935 1.11825 0.92806 0.91895 1.24947 0.95004 0.96197 0.97530 1.69926 1.32416 1.19396 1.30947 0.86457 0.78075 0.78727 0.84361 1.19678 1.20757 1.20775 1.21107 0.98345 0.83099 0.95795 1.21982 1.01006 0.95402 0.98568 1.22071 0.99978 0.95921 0.88952 1.61969 1.18893 1.29705 1.16608 1.22367 0.97723 0.90691 1.01547 1.22422 0.91183 1.01278 0.97694 1.68572 1.05403 1.31127 1.20159 1.24592 0.87769 0.93533 0.87426 1.68082 1.41612 0.99126 1.25466 0.92148 0.92124 0.88606 0.83015 0.73100 0.93825 0.95485 0.92423 0.90164 0.90962 0.91789 0.90909 0.90613 0.94761 0.95906 0.91663 0.91358 0.90858 0.91829 0.95739 0.78534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.41 101.05 1.05 1.44 16 2 O -0.30 -4.06 10.49 -18.31 -0.19 -4.25 16 3 C 0.38 5.73 7.52 -16.77 -0.13 5.61 16 4 C -0.29 -4.65 9.99 -38.97 -0.39 -5.04 16 5 C 0.46 8.36 7.45 -154.37 -1.15 7.21 16 6 N -0.65 -12.46 5.26 -15.71 -0.08 -12.55 16 7 C 0.70 14.68 8.24 -86.92 -0.72 13.96 16 8 O -0.55 -12.54 14.23 5.30 0.08 -12.47 16 9 N -0.61 -12.30 2.46 -180.80 -0.44 -12.75 16 10 C 0.24 5.31 4.97 -5.19 -0.03 5.29 16 11 C -0.54 -13.48 9.39 -34.44 -0.32 -13.80 16 12 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -23.43 13.29 55.43 0.74 -22.69 16 15 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.14 2.49 5.41 -4.04 -0.02 2.47 16 20 C -0.13 -2.05 5.46 -26.73 -0.15 -2.19 16 21 C 0.06 0.79 4.96 -3.82 -0.02 0.77 16 22 N -0.55 -7.07 5.02 -251.26 -1.26 -8.33 16 23 C 0.03 0.26 9.57 60.07 0.57 0.84 16 24 C 0.02 0.27 9.32 60.07 0.56 0.83 16 25 N -0.53 -9.70 8.04 -13.80 -0.11 -9.81 16 26 C 0.36 5.33 12.28 -92.23 -1.13 4.20 16 27 N -0.61 -8.95 9.38 -14.71 -0.14 -9.08 16 28 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.43 7.90 6.41 -40.82 -0.26 7.63 16 33 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 34 H 0.03 0.61 6.29 -51.93 -0.33 0.29 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 37 H 0.07 1.30 7.42 -51.93 -0.39 0.92 16 38 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 41 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 42 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 44 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 45 H 0.07 0.95 6.47 -51.93 -0.34 0.61 16 46 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 47 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.20 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -30.24 400.32 -9.88 -40.13 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.52 Total: 7.57 kcal Atomic # 6 Polarization: 25.12 SS G_CDS: -1.96 Total: 23.16 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -1.30 Total: -75.21 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.12 Total: -16.72 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.24 -9.88 -40.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182140076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.660 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds