Wall clock time and date at job start Tue Mar 31 2020 21:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35538 * 117.00656 * 2 1 4 4 C 1.38998 * 120.47663 * 180.02562 * 3 2 1 5 5 C 1.39126 * 118.29127 * 180.02562 * 4 3 2 6 6 N 1.39065 * 120.48751 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99912 * 174.83914 * 6 5 4 8 8 O 1.21576 * 119.99921 * 5.08247 * 7 6 5 9 9 N 1.34773 * 120.00237 * 185.08026 * 7 6 5 10 10 C 1.46504 * 119.99734 * 0.02562 * 9 7 6 11 11 C 1.50699 * 109.47269 * 89.99989 * 10 9 7 12 12 H 1.07995 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00004 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99826 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00251 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46815 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47104 * 119.99748 * 15 13 11 18 18 H 1.48501 * 109.46696 * 240.00005 * 15 13 11 19 19 C 1.46498 * 120.00144 * 180.02562 * 9 7 6 20 20 C 1.53004 * 109.46934 * 90.00415 * 19 9 7 21 21 C 1.53006 * 109.47018 * 180.02562 * 20 19 9 22 22 N 1.46893 * 109.46844 * 179.97438 * 21 20 19 23 23 C 1.46902 * 110.99822 * 169.99592 * 22 21 20 24 24 C 1.46902 * 111.00045 * 293.94879 * 22 21 20 25 25 N 1.33088 * 119.02097 * 359.97438 * 5 4 3 26 26 C 1.31716 * 120.85370 * 359.97438 * 25 5 4 27 27 N 1.31783 * 121.88912 * 0.02562 * 26 25 5 28 28 H 1.08997 * 109.47471 * 299.99984 * 1 2 3 29 29 H 1.09005 * 109.47019 * 59.99769 * 1 2 3 30 30 H 1.08999 * 109.47643 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.85510 * 359.74674 * 4 3 2 32 32 H 0.96991 * 120.00102 * 354.84081 * 6 5 4 33 33 H 1.09006 * 109.46784 * 209.99784 * 10 9 7 34 34 H 1.08997 * 109.47100 * 329.99465 * 10 9 7 35 35 H 0.97004 * 120.00148 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.47386 * 210.00223 * 19 9 7 37 37 H 1.09002 * 109.47374 * 330.00512 * 19 9 7 38 38 H 1.09006 * 109.46783 * 299.99550 * 20 19 9 39 39 H 1.08995 * 109.47316 * 60.00111 * 20 19 9 40 40 H 1.08998 * 109.46655 * 299.99590 * 21 20 19 41 41 H 1.08995 * 109.47171 * 59.99796 * 21 20 19 42 42 H 1.09003 * 109.46910 * 60.00421 * 23 22 21 43 43 H 1.09005 * 109.47214 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.47382 * 300.00114 * 23 22 21 45 45 H 1.09003 * 109.46803 * 60.00706 * 24 22 21 46 46 H 1.09005 * 109.46696 * 179.97438 * 24 22 21 47 47 H 1.08994 * 109.47577 * 300.00163 * 24 22 21 48 48 H 1.08001 * 119.06129 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 3.4318 1.2917 -0.0005 5 6 4.0159 2.5545 0.0000 6 7 5.3997 2.6918 0.0001 7 6 5.9555 3.9152 -0.1044 8 8 5.2500 4.9053 -0.1055 9 7 7.2934 4.0410 -0.2075 10 6 8.1435 2.8478 -0.2066 11 6 8.3329 2.3649 -1.6215 12 1 7.8663 2.8935 -2.4395 13 6 9.1010 1.2475 -1.8716 14 7 9.6687 0.6035 -0.8753 15 14 9.3352 0.6484 -3.6253 16 1 8.5974 1.5403 -4.5557 17 1 10.7806 0.6646 -3.9651 18 1 8.8130 -0.7363 -3.7492 19 6 7.8975 5.3708 -0.3204 20 6 8.2116 5.9086 1.0771 21 6 8.8420 7.2978 0.9592 22 7 9.1430 7.8143 2.3009 23 6 9.9597 9.0330 2.2249 24 6 7.9094 8.0539 3.0618 25 7 3.2306 3.6290 0.0005 26 6 1.9191 3.5072 0.0000 27 7 1.3293 2.3287 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.0408 0.3998 0.0031 32 1 5.9649 1.9071 0.0752 33 1 9.1133 3.0931 0.2265 34 1 7.6694 2.0643 0.3844 35 1 10.2094 -0.1825 -1.0512 36 1 8.8186 5.3035 -0.8993 37 1 7.2022 6.0445 -0.8212 38 1 7.2904 5.9760 1.6559 39 1 8.9070 5.2350 1.5778 40 1 9.7631 7.2307 0.3802 41 1 8.1464 7.9712 0.4586 42 1 9.4187 9.7988 1.6688 43 1 10.1676 9.3946 3.2320 44 1 10.8982 8.8104 1.7174 45 1 7.3576 7.1193 3.1628 46 1 8.1612 8.4355 4.0513 47 1 7.2942 8.7841 2.5361 48 1 1.3095 4.3987 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182140076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:30 Heat of formation + Delta-G solvation = -11.684419 kcal Electronic energy + Delta-G solvation = -29409.259894 eV Core-core repulsion = 25307.280758 eV Total energy + Delta-G solvation = -4101.979136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.41055 -41.15136 -39.45826 -38.66507 -37.01363 -36.32998 -34.73181 -33.51494 -32.93105 -31.89216 -29.26849 -28.48834 -28.39342 -27.17134 -25.47013 -25.11912 -24.59186 -23.40499 -21.79688 -21.24067 -20.16363 -19.05584 -18.52635 -18.46198 -17.36837 -17.23288 -16.63271 -16.57006 -16.53715 -16.40714 -16.35081 -15.93796 -15.71498 -15.49961 -15.10941 -15.05226 -14.86669 -14.56457 -14.34883 -13.60485 -13.43801 -13.26021 -12.93098 -12.90681 -12.89715 -12.77597 -12.68670 -12.55704 -12.41452 -12.36260 -12.19341 -11.99148 -11.75948 -11.69173 -11.48621 -11.32677 -10.62564 -10.42168 -10.14718 -9.87251 -9.39818 -9.30492 -8.21752 -6.36856 -0.07346 0.17564 1.35517 1.39593 1.44584 1.53907 2.03706 2.15148 2.39192 2.71316 2.88687 3.08006 3.08592 3.13066 3.43524 3.89280 3.96265 4.11495 4.14222 4.24329 4.41335 4.45014 4.45345 4.45473 4.47991 4.51410 4.64678 4.67969 4.73426 4.75480 4.82745 4.85280 4.92201 5.00509 5.02784 5.11884 5.14522 5.31390 5.36821 5.58390 5.67541 5.81107 6.00942 6.02487 6.06801 6.13551 6.18804 6.62940 6.85917 7.18153 7.35922 7.57654 8.83066 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007022 B = 0.003837 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3986.490279 B = 7295.910390 C =10738.176677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C 0.379 3.621 4 C -0.294 4.294 5 C 0.440 3.560 6 N -0.653 5.653 7 C 0.696 3.304 8 O -0.573 6.573 9 N -0.608 5.608 10 C 0.253 3.747 11 C -0.547 4.547 12 H 0.050 0.950 13 C 0.029 3.971 14 N -0.914 5.914 15 Si 0.953 3.047 16 H -0.276 1.276 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.140 3.860 20 C -0.114 4.114 21 C 0.066 3.934 22 N -0.564 5.564 23 C 0.025 3.975 24 C 0.024 3.976 25 N -0.561 5.561 26 C 0.358 3.642 27 N -0.600 5.600 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.163 0.837 32 H 0.428 0.572 33 H 0.031 0.969 34 H 0.025 0.975 35 H 0.269 0.731 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.026 0.974 48 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 5.960 4.683 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.213 6.213 3 C 0.193 3.807 4 C -0.321 4.321 5 C 0.202 3.798 6 N -0.302 5.302 7 C 0.397 3.603 8 O -0.449 6.449 9 N -0.343 5.343 10 C 0.132 3.868 11 C -0.586 4.586 12 H 0.068 0.932 13 C -0.172 4.172 14 N -0.553 5.553 15 Si 0.779 3.221 16 H -0.201 1.201 17 H -0.203 1.203 18 H -0.203 1.203 19 C 0.016 3.984 20 C -0.153 4.153 21 C -0.063 4.063 22 N -0.288 5.288 23 C -0.123 4.123 24 C -0.124 4.124 25 N -0.287 5.287 26 C 0.069 3.931 27 N -0.334 5.334 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.181 0.819 32 H 0.269 0.731 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.045 0.955 48 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.299 6.667 4.959 13.233 hybrid contribution 0.532 -1.050 -1.255 1.721 sum -9.767 5.617 3.704 11.860 Atomic orbital electron populations 1.23214 0.74794 1.05176 1.02886 1.86228 1.25208 1.23220 1.86642 1.19706 0.88570 0.85594 0.86805 1.21129 0.94074 0.98315 1.18600 1.18291 0.84574 0.89218 0.87735 1.42945 1.03855 1.10594 1.72818 1.16019 0.82906 0.82983 0.78368 1.90919 1.61027 1.36189 1.56758 1.47460 1.03555 1.09121 1.74126 1.19063 0.90101 0.81527 0.96093 1.21665 1.31714 1.11841 0.93391 0.93214 1.25549 0.94802 0.96328 1.00564 1.69996 1.33002 1.19838 1.32444 0.85589 0.77940 0.78150 0.80464 1.20085 1.20327 1.20308 1.21224 0.98091 0.81974 0.97069 1.21775 1.00117 0.96649 0.96753 1.21963 1.00168 0.94362 0.89772 1.61958 1.19471 1.31341 1.16055 1.22426 0.97475 0.89719 1.02653 1.22410 0.90886 1.00537 0.98573 1.68530 1.06870 1.31863 1.21401 1.25260 0.87025 0.94727 0.86069 1.68195 1.41199 0.98995 1.24995 0.91769 0.91966 0.85452 0.81925 0.73085 0.95139 0.95759 0.92186 0.89899 0.91300 0.93209 0.92124 0.89727 0.94535 0.95289 0.90306 0.90821 0.92508 0.90098 0.95513 0.75219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.41 113.37 1.18 1.74 16 2 O -0.31 -7.72 10.49 -88.43 -0.93 -8.64 16 3 C 0.38 11.02 7.52 84.70 0.64 11.66 16 4 C -0.29 -9.26 9.99 22.67 0.23 -9.03 16 5 C 0.44 16.13 7.45 132.83 0.99 17.12 16 6 N -0.65 -25.62 5.26 -321.90 -1.69 -27.31 16 7 C 0.70 29.96 8.24 179.05 1.47 31.43 16 8 O -0.57 -26.54 14.23 -3.96 -0.06 -26.59 16 9 N -0.61 -25.32 2.46 -844.20 -2.07 -27.39 16 10 C 0.25 11.57 4.97 85.63 0.43 12.00 16 11 C -0.55 -27.47 9.39 25.60 0.24 -27.23 16 12 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 13 C 0.03 1.46 5.46 84.65 0.46 1.92 16 14 N -0.91 -48.19 13.29 21.45 0.28 -47.91 16 15 Si 0.95 40.94 29.54 68.60 2.03 42.97 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 19 C 0.14 5.05 5.41 86.38 0.47 5.52 16 20 C -0.11 -3.64 5.46 30.60 0.17 -3.47 16 21 C 0.07 1.74 4.96 86.31 0.43 2.16 16 22 N -0.56 -14.01 5.02 -948.85 -4.76 -18.77 16 23 C 0.03 0.47 9.57 127.69 1.22 1.70 16 24 C 0.02 0.56 9.32 127.69 1.19 1.75 16 25 N -0.56 -20.59 8.04 -197.56 -1.59 -22.18 16 26 C 0.36 10.29 12.28 180.91 2.22 12.51 16 27 N -0.60 -16.72 9.38 -313.03 -2.94 -19.66 16 28 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 29 H 0.06 1.03 8.12 -2.38 -0.02 1.01 16 30 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 32 H 0.43 16.28 6.41 -92.72 -0.59 15.68 16 33 H 0.03 1.47 8.07 -2.38 -0.02 1.46 16 34 H 0.02 1.13 6.29 -2.39 -0.02 1.12 16 35 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 36 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16 37 H 0.07 2.53 7.42 -2.39 -0.02 2.51 16 38 H 0.05 1.73 6.55 -2.38 -0.02 1.72 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 2.07 8.06 -2.39 -0.02 2.05 16 41 H 0.04 0.95 8.12 -2.39 -0.02 0.93 16 42 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.08 1.27 8.12 -2.38 -0.02 1.26 16 44 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 45 H 0.06 1.49 6.47 -2.39 -0.02 1.47 16 46 H 0.08 1.56 8.12 -2.38 -0.02 1.54 16 47 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.23 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -63.97 400.32 -0.02 -64.00 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.37 Total: 31.73 kcal Atomic # 6 Polarization: 48.45 SS G_CDS: 11.33 Total: 59.78 kcal Atomic # 7 Polarization: -150.46 SS G_CDS: -12.77 Total: -163.23 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.98 Total: -35.24 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -63.97 -0.02 -64.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182140076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.312 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds