Wall clock time and date at job start Tue Mar 31 2020 21:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00064 * 2 1 4 4 C 1.52997 * 109.47224 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47123 * 65.00090 * 4 3 2 6 6 C 1.48529 * 111.00331 * 287.39835 * 5 4 3 7 7 C 1.54936 * 103.23003 * 200.27914 * 6 5 4 8 8 C 1.54593 * 102.92101 * 37.41283 * 7 6 5 9 9 H 1.09006 * 110.39567 * 97.00272 * 8 7 6 10 10 N 1.46497 * 110.31094 * 219.12767 * 8 7 6 11 11 C 1.34776 * 120.00140 * 270.71907 * 10 8 7 12 12 O 1.21596 * 120.00141 * 359.97438 * 11 10 8 13 13 N 1.34779 * 120.00235 * 179.97438 * 11 10 8 14 14 C 1.40202 * 119.99955 * 179.97438 * 13 11 10 15 15 C 1.40398 * 125.97211 * 0.25471 * 14 13 11 16 16 C 1.35242 * 107.86869 * 180.14830 * 15 14 13 17 17 N 1.34965 * 107.85628 * 359.61679 * 16 15 14 18 18 C 1.46498 * 125.97909 * 180.22075 * 17 16 15 19 19 C 1.50704 * 109.47356 * 124.99922 * 18 17 16 20 20 H 1.08002 * 119.99714 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99798 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00480 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99756 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47171 * 59.99765 * 23 21 19 25 25 H 1.48500 * 109.47099 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47029 * 300.00145 * 23 21 19 27 27 N 1.31204 * 125.97033 * 179.97438 * 14 13 11 28 28 C 1.47900 * 111.00194 * 169.99899 * 5 4 3 29 29 H 1.08992 * 109.46883 * 299.99760 * 1 2 3 30 30 H 1.08999 * 109.47224 * 59.99596 * 1 2 3 31 31 H 1.09004 * 109.46962 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47070 * 60.00006 * 3 2 1 33 33 H 1.09000 * 109.47347 * 300.00115 * 3 2 1 34 34 H 1.09001 * 109.46879 * 305.00112 * 4 3 2 35 35 H 1.08998 * 109.47183 * 185.00443 * 4 3 2 36 36 H 1.09004 * 110.66792 * 318.71458 * 6 5 4 37 37 H 1.09004 * 110.66787 * 81.84312 * 6 5 4 38 38 H 1.08994 * 110.72536 * 279.05166 * 7 6 5 39 39 H 1.09000 * 110.72575 * 155.76959 * 7 6 5 40 40 H 0.96997 * 120.00183 * 90.70925 * 10 8 7 41 41 H 0.96997 * 120.00083 * 0.02562 * 13 11 10 42 42 H 1.08005 * 126.06627 * 0.04629 * 15 14 13 43 43 H 1.08002 * 126.07629 * 179.88650 * 16 15 14 44 44 H 1.09005 * 109.47477 * 245.00313 * 18 17 16 45 45 H 1.09006 * 109.46937 * 5.00433 * 18 17 16 46 46 H 0.97000 * 120.00453 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.91585 * 26.49150 * 28 5 4 48 48 H 1.09003 * 109.91864 * 265.20005 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5627 -1.2561 6 6 3.6481 -0.8855 -1.2772 7 6 4.6085 -1.4516 -2.3532 8 6 5.9013 -0.6347 -2.1268 9 1 6.6004 -1.1945 -1.5054 10 7 6.5211 -0.2973 -3.4106 11 6 7.4136 -1.1383 -3.9697 12 8 7.7049 -2.1768 -3.4083 13 7 7.9835 -0.8281 -5.1510 14 6 8.9124 -1.7027 -5.7323 15 6 9.3349 -2.9306 -5.1987 16 6 10.2349 -3.4671 -6.0539 17 7 10.3733 -2.6190 -7.0947 18 6 11.2478 -2.8144 -8.2536 19 6 10.4349 -2.7152 -9.5188 20 1 9.3731 -2.5251 -9.4648 21 6 11.0469 -2.8659 -10.7450 22 7 12.3399 -3.0968 -10.8106 23 14 10.0394 -2.7422 -12.3132 24 1 9.4067 -1.4010 -12.3905 25 1 10.9259 -2.9404 -13.4880 26 1 8.9846 -3.7875 -12.3077 27 7 9.5348 -1.5191 -6.8726 28 6 5.4466 0.6447 -1.4002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9785 2.1765 0.0890 36 1 3.8474 -1.3395 -0.3065 37 1 2.6093 -1.0400 -1.5692 38 1 4.2125 -1.2775 -3.3537 39 1 4.7895 -2.5137 -2.1884 40 1 6.2890 0.5312 -3.8583 41 1 7.7515 0.0005 -5.5987 42 1 9.0018 -3.3683 -4.2692 43 1 10.7481 -4.4090 -5.9286 44 1 12.0220 -2.0471 -8.2581 45 1 11.7121 -3.7989 -8.1965 46 1 12.7704 -3.2033 -11.6733 47 1 5.9136 0.6991 -0.4168 48 1 5.7136 1.5215 -1.9901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266379600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:50 Heat of formation + Delta-G solvation = 24.850823 kcal Electronic energy + Delta-G solvation = -28301.745124 eV Core-core repulsion = 24201.350276 eV Total energy + Delta-G solvation = -4100.394849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.74458 -39.98242 -39.05039 -37.86934 -34.90002 -34.47483 -33.31947 -32.02768 -30.74466 -29.29711 -29.24748 -28.03288 -26.61800 -26.41808 -23.28177 -22.98223 -22.05092 -21.23515 -20.87444 -20.36774 -19.73475 -18.02106 -17.04840 -16.96715 -16.65787 -16.53023 -16.18632 -15.69887 -15.41443 -15.17474 -14.92978 -14.50436 -14.44493 -14.13746 -14.02380 -13.83197 -13.21061 -13.13733 -12.76502 -12.41839 -12.26972 -12.22378 -12.15808 -12.06144 -11.89043 -11.72523 -11.58038 -11.24632 -11.07441 -10.99484 -10.84048 -10.39426 -10.22653 -10.06949 -10.03231 -9.64382 -9.47034 -9.18817 -8.80226 -8.60095 -8.05605 -7.36812 -6.21323 -4.26345 2.42239 2.70972 3.15459 3.27695 3.30702 3.35388 3.35676 3.54740 3.67717 3.88238 4.23456 4.30411 4.38835 4.46036 4.66546 4.78040 4.83747 4.89865 4.94689 5.00764 5.04905 5.13655 5.14658 5.17843 5.27167 5.34174 5.41687 5.48797 5.59370 5.76028 5.86610 5.87090 5.96684 6.27486 6.38258 6.49383 6.58850 6.61363 6.66211 6.72339 6.91584 7.05406 7.15476 7.54670 7.72672 7.86616 8.02738 8.11078 8.64695 8.70751 8.84100 9.39101 10.87263 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.001734 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.920936 B =16148.115208 C =16747.892563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.066 3.934 4 C 0.046 3.954 5 N -0.514 5.514 6 C 0.047 3.953 7 C -0.139 4.139 8 C 0.158 3.842 9 H 0.098 0.902 10 N -0.735 5.735 11 C 0.714 3.286 12 O -0.568 6.568 13 N -0.644 5.644 14 C 0.276 3.724 15 C -0.286 4.286 16 C 0.050 3.950 17 N -0.321 5.321 18 C 0.259 3.741 19 C -0.528 4.528 20 H 0.068 0.932 21 C 0.062 3.938 22 N -0.896 5.896 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.308 5.308 28 C 0.028 3.972 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.398 0.602 41 H 0.406 0.594 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.267 0.733 47 H 0.056 0.944 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.769 9.138 23.440 31.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.082 4.082 5 N -0.239 5.239 6 C -0.081 4.081 7 C -0.178 4.178 8 C 0.052 3.948 9 H 0.116 0.884 10 N -0.392 5.392 11 C 0.413 3.587 12 O -0.444 6.444 13 N -0.293 5.293 14 C 0.022 3.978 15 C -0.318 4.318 16 C -0.100 4.100 17 N -0.103 5.103 18 C 0.142 3.858 19 C -0.567 4.567 20 H 0.086 0.914 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 N -0.139 5.139 28 C -0.101 4.101 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.233 0.767 41 H 0.241 0.759 42 H 0.178 0.822 43 H 0.184 0.816 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.248 9.026 22.324 30.827 hybrid contribution -0.585 0.232 -0.041 0.631 sum -19.833 9.259 22.283 31.235 Atomic orbital electron populations 1.22720 0.81193 1.02753 0.99855 1.87935 1.19563 1.27818 1.95332 1.22542 0.93133 0.85053 1.00405 1.22327 0.94110 1.00385 0.91380 1.64801 1.11302 1.14590 1.33228 1.23266 1.00701 0.86420 0.97704 1.23038 0.94495 1.00112 1.00188 1.21614 0.94476 0.94943 0.83796 0.88413 1.45116 1.45862 1.24384 1.23814 1.15638 0.79090 0.83673 0.80298 1.90861 1.65509 1.24769 1.63216 1.41391 1.43218 1.23482 1.21259 1.18784 0.94072 0.91586 0.93350 1.21509 1.07142 0.97527 1.05576 1.22551 1.00410 0.97510 0.89484 1.49043 1.31331 1.12495 1.17410 1.19721 0.87911 0.98401 0.79815 1.21230 0.95662 1.50188 0.89605 0.91357 1.24937 0.95113 0.94645 0.99360 1.69906 1.09155 1.48279 1.26057 0.86390 0.79716 0.78921 0.81472 1.19959 1.21068 1.20055 1.77321 1.10761 1.10640 1.15227 1.23132 0.88574 0.98287 1.00057 0.94319 0.94016 0.89686 0.93039 0.92301 0.93524 0.89328 0.93482 0.88747 0.90261 0.90287 0.76732 0.75891 0.82207 0.81574 0.93791 0.92567 0.92306 0.92533 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.88 8.07 -35.23 -0.28 -3.17 16 3 C 0.07 0.39 6.25 37.16 0.23 0.62 16 4 C 0.05 0.28 5.27 -3.83 -0.02 0.26 16 5 N -0.51 -3.92 5.24 -230.46 -1.21 -5.13 16 6 C 0.05 0.39 5.32 -1.90 -0.01 0.38 16 7 C -0.14 -1.32 6.78 -24.87 -0.17 -1.49 16 8 C 0.16 1.48 3.34 -66.58 -0.22 1.26 16 9 H 0.10 1.06 7.56 -51.93 -0.39 0.67 16 10 N -0.74 -7.52 5.06 -57.35 -0.29 -7.81 16 11 C 0.71 10.58 8.53 -86.92 -0.74 9.84 16 12 O -0.57 -10.29 13.12 5.28 0.07 -10.22 16 13 N -0.64 -10.17 5.46 -15.50 -0.08 -10.25 16 14 C 0.28 5.66 8.11 -154.36 -1.25 4.41 16 15 C -0.29 -5.83 9.61 -39.84 -0.38 -6.21 16 16 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 17 N -0.32 -7.59 3.67 -62.56 -0.23 -7.82 16 18 C 0.26 6.67 6.26 -5.19 -0.03 6.63 16 19 C -0.53 -14.86 9.24 -34.44 -0.32 -15.18 16 20 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.90 -25.50 13.29 55.43 0.74 -24.77 16 23 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 N -0.31 -7.21 12.42 31.44 0.39 -6.82 16 28 C 0.03 0.20 6.43 -2.75 -0.02 0.18 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.30 7.83 -51.93 -0.41 -0.11 16 35 H 0.09 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.05 0.40 7.81 -51.93 -0.41 0.00 16 37 H 0.09 0.85 6.80 -51.93 -0.35 0.50 16 38 H 0.08 0.81 8.06 -51.93 -0.42 0.40 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 3.05 8.37 -40.82 -0.34 2.70 16 41 H 0.41 5.20 8.84 -40.82 -0.36 4.84 16 42 H 0.16 3.20 5.91 -52.48 -0.31 2.89 16 43 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 44 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 46 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.06 0.37 7.77 -51.93 -0.40 -0.04 16 48 H 0.09 0.55 7.65 -51.93 -0.40 0.16 16 LS Contribution 394.15 15.07 5.94 5.94 Total: -1.00 -33.65 394.15 -9.65 -43.30 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.56 Total: 5.80 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -2.12 Total: 4.44 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.69 Total: -62.60 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.22 Total: -13.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.65 -9.65 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266379600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.150 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds