Wall clock time and date at job start Tue Mar 31 2020 21:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00064 * 2 1 4 4 C 1.52997 * 109.47224 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47123 * 65.00090 * 4 3 2 6 6 C 1.48529 * 111.00331 * 287.39835 * 5 4 3 7 7 C 1.54936 * 103.23003 * 200.27914 * 6 5 4 8 8 C 1.54593 * 102.92101 * 37.41283 * 7 6 5 9 9 H 1.09006 * 110.39567 * 97.00272 * 8 7 6 10 10 N 1.46497 * 110.31094 * 219.12767 * 8 7 6 11 11 C 1.34776 * 120.00140 * 270.71907 * 10 8 7 12 12 O 1.21596 * 120.00141 * 359.97438 * 11 10 8 13 13 N 1.34779 * 120.00235 * 179.97438 * 11 10 8 14 14 C 1.40202 * 119.99955 * 179.97438 * 13 11 10 15 15 C 1.40398 * 125.97211 * 0.25471 * 14 13 11 16 16 C 1.35242 * 107.86869 * 180.14830 * 15 14 13 17 17 N 1.34965 * 107.85628 * 359.61679 * 16 15 14 18 18 C 1.46498 * 125.97909 * 180.22075 * 17 16 15 19 19 C 1.50704 * 109.47356 * 124.99922 * 18 17 16 20 20 H 1.08002 * 119.99714 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99798 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00480 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99756 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47171 * 59.99765 * 23 21 19 25 25 H 1.48500 * 109.47099 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47029 * 300.00145 * 23 21 19 27 27 N 1.31204 * 125.97033 * 179.97438 * 14 13 11 28 28 C 1.47900 * 111.00194 * 169.99899 * 5 4 3 29 29 H 1.08992 * 109.46883 * 299.99760 * 1 2 3 30 30 H 1.08999 * 109.47224 * 59.99596 * 1 2 3 31 31 H 1.09004 * 109.46962 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47070 * 60.00006 * 3 2 1 33 33 H 1.09000 * 109.47347 * 300.00115 * 3 2 1 34 34 H 1.09001 * 109.46879 * 305.00112 * 4 3 2 35 35 H 1.08998 * 109.47183 * 185.00443 * 4 3 2 36 36 H 1.09004 * 110.66792 * 318.71458 * 6 5 4 37 37 H 1.09004 * 110.66787 * 81.84312 * 6 5 4 38 38 H 1.08994 * 110.72536 * 279.05166 * 7 6 5 39 39 H 1.09000 * 110.72575 * 155.76959 * 7 6 5 40 40 H 0.96997 * 120.00183 * 90.70925 * 10 8 7 41 41 H 0.96997 * 120.00083 * 0.02562 * 13 11 10 42 42 H 1.08005 * 126.06627 * 0.04629 * 15 14 13 43 43 H 1.08002 * 126.07629 * 179.88650 * 16 15 14 44 44 H 1.09005 * 109.47477 * 245.00313 * 18 17 16 45 45 H 1.09006 * 109.46937 * 5.00433 * 18 17 16 46 46 H 0.97000 * 120.00453 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.91585 * 26.49150 * 28 5 4 48 48 H 1.09003 * 109.91864 * 265.20005 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5627 -1.2561 6 6 3.6481 -0.8855 -1.2772 7 6 4.6085 -1.4516 -2.3532 8 6 5.9013 -0.6347 -2.1268 9 1 6.6004 -1.1945 -1.5054 10 7 6.5211 -0.2973 -3.4106 11 6 7.4136 -1.1383 -3.9697 12 8 7.7049 -2.1768 -3.4083 13 7 7.9835 -0.8281 -5.1510 14 6 8.9124 -1.7027 -5.7323 15 6 9.3349 -2.9306 -5.1987 16 6 10.2349 -3.4671 -6.0539 17 7 10.3733 -2.6190 -7.0947 18 6 11.2478 -2.8144 -8.2536 19 6 10.4349 -2.7152 -9.5188 20 1 9.3731 -2.5251 -9.4648 21 6 11.0469 -2.8659 -10.7450 22 7 12.3399 -3.0968 -10.8106 23 14 10.0394 -2.7422 -12.3132 24 1 9.4067 -1.4010 -12.3905 25 1 10.9259 -2.9404 -13.4880 26 1 8.9846 -3.7875 -12.3077 27 7 9.5348 -1.5191 -6.8726 28 6 5.4466 0.6447 -1.4002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9785 2.1765 0.0890 36 1 3.8474 -1.3395 -0.3065 37 1 2.6093 -1.0400 -1.5692 38 1 4.2125 -1.2775 -3.3537 39 1 4.7895 -2.5137 -2.1884 40 1 6.2890 0.5312 -3.8583 41 1 7.7515 0.0005 -5.5987 42 1 9.0018 -3.3683 -4.2692 43 1 10.7481 -4.4090 -5.9286 44 1 12.0220 -2.0471 -8.2581 45 1 11.7121 -3.7989 -8.1965 46 1 12.7704 -3.2033 -11.6733 47 1 5.9136 0.6991 -0.4168 48 1 5.7136 1.5215 -1.9901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266379600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:49 Heat of formation + Delta-G solvation = 0.225442 kcal Electronic energy + Delta-G solvation = -28302.812961 eV Core-core repulsion = 24201.350276 eV Total energy + Delta-G solvation = -4101.462686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.21505 -41.12983 -39.91151 -38.45045 -36.24259 -35.56189 -35.22431 -33.05931 -32.26334 -30.91008 -29.90870 -28.95640 -28.22018 -26.97573 -25.06199 -23.61132 -23.34177 -22.10210 -21.83413 -21.61570 -21.19560 -19.25055 -18.67344 -18.21018 -17.57006 -17.44065 -17.16732 -16.79598 -16.60484 -16.25388 -16.01133 -15.73277 -15.57774 -15.38609 -15.12317 -14.69670 -14.44156 -14.24810 -13.86148 -13.77950 -13.72978 -13.64858 -13.06227 -12.94548 -12.74719 -12.71170 -12.61574 -12.44197 -12.26791 -12.16317 -12.05752 -11.79264 -11.77993 -11.61489 -11.38197 -11.09287 -10.70754 -10.52081 -10.17911 -9.70526 -9.39213 -9.03190 -8.31286 -6.45618 1.09238 1.15467 1.39197 1.41133 1.50019 1.72428 2.12836 2.37224 2.42976 2.95444 2.98894 3.00188 3.18790 3.56232 3.78005 3.99311 4.10181 4.20837 4.30301 4.35479 4.36883 4.41205 4.47914 4.58792 4.63997 4.69838 4.73167 4.78150 4.82590 4.90509 4.91620 4.95017 4.97253 4.99220 5.05139 5.13500 5.20385 5.22400 5.55977 5.58711 5.77692 5.86784 5.92749 5.99725 6.05921 6.30766 6.31289 6.65124 6.78811 7.17411 7.24228 7.45896 8.75860 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.001734 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.920936 B =16148.115208 C =16747.892563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.064 3.936 4 C 0.045 3.955 5 N -0.520 5.520 6 C 0.057 3.943 7 C -0.137 4.137 8 C 0.156 3.844 9 H 0.084 0.916 10 N -0.712 5.712 11 C 0.713 3.287 12 O -0.601 6.601 13 N -0.636 5.636 14 C 0.285 3.715 15 C -0.293 4.293 16 C 0.056 3.944 17 N -0.345 5.345 18 C 0.273 3.727 19 C -0.549 4.549 20 H 0.052 0.948 21 C 0.019 3.981 22 N -0.920 5.920 23 Si 0.971 3.029 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.270 1.270 27 N -0.348 5.348 28 C 0.036 3.964 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.414 0.586 41 H 0.421 0.579 42 H 0.166 0.834 43 H 0.200 0.800 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.272 0.728 47 H 0.068 0.932 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.173 10.162 24.115 33.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.013 4.013 4 C -0.083 4.083 5 N -0.245 5.245 6 C -0.071 4.071 7 C -0.176 4.176 8 C 0.050 3.950 9 H 0.102 0.898 10 N -0.369 5.369 11 C 0.412 3.588 12 O -0.479 6.479 13 N -0.288 5.288 14 C 0.030 3.970 15 C -0.324 4.324 16 C -0.093 4.093 17 N -0.127 5.127 18 C 0.154 3.846 19 C -0.587 4.587 20 H 0.070 0.930 21 C -0.181 4.181 22 N -0.559 5.559 23 Si 0.795 3.205 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.195 1.195 27 N -0.179 5.179 28 C -0.092 4.092 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.126 0.874 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.252 0.748 41 H 0.258 0.742 42 H 0.184 0.816 43 H 0.217 0.783 44 H 0.039 0.961 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.695 10.102 23.030 32.568 hybrid contribution -0.228 -0.063 -0.104 0.258 sum -20.923 10.039 22.926 32.621 Atomic orbital electron populations 1.22820 0.80222 1.03279 1.00497 1.87899 1.20767 1.28809 1.95481 1.22616 0.92951 0.84653 1.01042 1.22432 0.94402 1.01105 0.90378 1.64824 1.11448 1.13804 1.34397 1.23106 0.99885 0.87101 0.96960 1.22965 0.94883 0.99526 1.00231 1.21704 0.93906 0.96261 0.83081 0.89822 1.44982 1.44105 1.24033 1.23771 1.15789 0.79405 0.83764 0.79793 1.90834 1.66705 1.26409 1.63928 1.41387 1.42398 1.23446 1.21576 1.19080 0.93536 0.92044 0.92379 1.21681 1.07275 0.97687 1.05760 1.23148 0.99910 0.98050 0.88142 1.48808 1.32324 1.13702 1.17873 1.19326 0.87548 0.97532 0.80174 1.21384 0.95173 1.50984 0.91159 0.92954 1.25730 0.96182 0.93935 1.02300 1.69984 1.10366 1.48422 1.27101 0.85411 0.78404 0.78850 0.77817 1.19830 1.19773 1.19540 1.77241 1.12240 1.11488 1.16968 1.23102 0.88392 0.97258 1.00489 0.93242 0.93765 0.89324 0.91445 0.92563 0.93816 0.87432 0.93746 0.89396 0.90965 0.91540 0.74824 0.74212 0.81633 0.78285 0.96079 0.92383 0.91850 0.91358 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -5.62 8.07 -148.98 -1.20 -6.82 16 3 C 0.06 0.64 6.25 71.98 0.45 1.09 16 4 C 0.04 0.45 5.27 86.30 0.45 0.90 16 5 N -0.52 -6.90 5.24 -883.04 -4.63 -11.53 16 6 C 0.06 0.91 5.32 86.65 0.46 1.37 16 7 C -0.14 -2.51 6.78 31.80 0.22 -2.30 16 8 C 0.16 2.73 3.34 45.87 0.15 2.88 16 9 H 0.08 1.76 7.56 -2.38 -0.02 1.74 16 10 N -0.71 -13.42 5.06 -453.60 -2.30 -15.72 16 11 C 0.71 20.41 8.53 179.05 1.53 21.94 16 12 O -0.60 -21.47 13.12 -4.02 -0.05 -21.52 16 13 N -0.64 -19.55 5.46 -321.22 -1.75 -21.30 16 14 C 0.29 11.64 8.11 133.31 1.08 12.72 16 15 C -0.29 -11.81 9.61 22.10 0.21 -11.59 16 16 C 0.06 2.26 11.44 83.52 0.96 3.22 16 17 N -0.35 -16.51 3.67 -351.83 -1.29 -17.80 16 18 C 0.27 14.36 6.26 85.63 0.54 14.90 16 19 C -0.55 -31.32 9.24 25.60 0.24 -31.09 16 20 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 21 C 0.02 1.06 5.46 84.65 0.46 1.52 16 22 N -0.92 -52.48 13.29 21.44 0.28 -52.19 16 23 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 N -0.35 -16.46 12.42 -54.44 -0.68 -17.14 16 28 C 0.04 0.43 6.43 86.45 0.56 0.99 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.04 0.48 7.83 -2.39 -0.02 0.46 16 35 H 0.11 0.67 8.08 -2.39 -0.02 0.65 16 36 H 0.04 0.73 7.81 -2.38 -0.02 0.71 16 37 H 0.09 1.54 6.80 -2.38 -0.02 1.52 16 38 H 0.07 1.43 8.06 -2.39 -0.02 1.42 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.41 5.35 8.37 -92.71 -0.78 4.57 16 41 H 0.42 10.26 8.84 -92.71 -0.82 9.44 16 42 H 0.17 6.54 5.91 -2.91 -0.02 6.52 16 43 H 0.20 6.40 8.06 -2.91 -0.02 6.37 16 44 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.06 2.98 8.07 -2.38 -0.02 2.96 16 46 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.07 0.70 7.77 -2.39 -0.02 0.68 16 48 H 0.10 0.96 7.65 -2.39 -0.02 0.94 16 Total: -1.00 -72.47 394.15 -1.65 -74.12 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.61 Total: 25.94 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 8.55 Total: 18.04 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -10.36 Total: -135.68 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.26 Total: -28.35 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.47 -1.65 -74.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266379600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.344 kcal (2) G-P(sol) polarization free energy of solvation -72.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds