Wall clock time and date at job start Tue Mar 31 2020 21:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00438 * 2 1 4 4 C 1.53000 * 109.47654 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47065 * 64.14356 * 4 3 2 6 6 C 1.47899 * 111.00164 * 175.79333 * 5 4 3 7 7 C 1.53995 * 107.05965 * 214.15609 * 6 5 4 8 8 C 1.54594 * 105.13888 * 1.22825 * 7 6 5 9 9 H 1.09003 * 110.72061 * 263.42248 * 8 7 6 10 10 N 1.46498 * 110.72452 * 140.31670 * 8 7 6 11 11 C 1.34770 * 120.00372 * 86.45159 * 10 8 7 12 12 O 1.21588 * 119.99851 * 359.97438 * 11 10 8 13 13 N 1.34782 * 120.00264 * 179.97438 * 11 10 8 14 14 C 1.40192 * 119.99997 * 179.97438 * 13 11 10 15 15 C 1.40405 * 125.97391 * 359.71567 * 14 13 11 16 16 C 1.35243 * 107.86593 * 179.82781 * 15 14 13 17 17 N 1.34959 * 107.85882 * 0.43014 * 16 15 14 18 18 C 1.46504 * 125.97676 * 179.70610 * 17 16 15 19 19 C 1.50700 * 109.46869 * 125.00004 * 18 17 16 20 20 H 1.08002 * 120.00427 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99852 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00300 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00034 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47308 * 89.99613 * 23 21 19 25 25 H 1.48492 * 109.47202 * 209.99663 * 23 21 19 26 26 H 1.48504 * 109.46906 * 329.99960 * 23 21 19 27 27 N 1.31210 * 125.97235 * 180.02562 * 14 13 11 28 28 C 1.48540 * 110.99953 * 58.39785 * 5 4 3 29 29 H 1.09001 * 109.46660 * 59.99706 * 1 2 3 30 30 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47090 * 300.00428 * 1 2 3 32 32 H 1.09001 * 109.47053 * 300.00063 * 3 2 1 33 33 H 1.09004 * 109.47310 * 59.99693 * 3 2 1 34 34 H 1.08995 * 109.47250 * 184.14880 * 4 3 2 35 35 H 1.08996 * 109.46586 * 304.14834 * 4 3 2 36 36 H 1.09005 * 109.91749 * 333.51037 * 6 5 4 37 37 H 1.09005 * 109.91704 * 94.60401 * 6 5 4 38 38 H 1.09001 * 110.30379 * 120.14182 * 7 6 5 39 39 H 1.08993 * 110.30947 * 242.30657 * 7 6 5 40 40 H 0.97009 * 119.99623 * 266.44835 * 10 8 7 41 41 H 0.96996 * 119.99785 * 0.02562 * 13 11 10 42 42 H 1.07999 * 126.06347 * 0.02562 * 15 14 13 43 43 H 1.08005 * 126.06979 * 180.16144 * 16 15 14 44 44 H 1.09002 * 109.47015 * 244.99639 * 18 17 16 45 45 H 1.09001 * 109.46847 * 5.00058 * 18 17 16 46 46 H 0.97003 * 120.00580 * 180.02562 * 22 21 19 47 47 H 1.08995 * 110.66293 * 278.15534 * 28 5 4 48 48 H 1.08999 * 110.66219 * 41.28204 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9755 0.5440 -1.2473 6 6 5.4516 0.5007 -1.3287 7 6 5.8272 0.6675 -2.8128 8 6 4.4810 0.8381 -3.5533 9 1 4.1449 -0.1128 -3.9667 10 7 4.5938 1.8487 -4.6079 11 6 5.0277 1.4973 -5.8345 12 8 5.3259 0.3414 -6.0658 13 7 5.1310 2.4270 -6.8049 14 6 5.5829 2.0614 -8.0806 15 6 5.9648 0.7713 -8.4820 16 6 6.3325 0.8330 -9.7820 17 7 6.1995 2.1127 -10.1894 18 6 6.4967 2.6246 -11.5296 19 6 5.2836 3.3307 -12.0780 20 1 4.3813 3.3916 -11.4876 21 6 5.3255 3.8988 -13.3336 22 7 4.2668 4.5145 -13.8125 23 14 6.8859 3.7928 -14.3551 24 1 6.8516 2.5618 -15.1850 25 1 6.9812 4.9827 -15.2383 26 1 8.0655 3.7495 -13.4539 27 7 5.7281 2.8661 -9.1067 28 6 3.5272 1.3203 -2.4316 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 3.9787 2.1776 0.0737 35 1 3.8524 0.5807 0.8496 36 1 5.8798 1.3146 -0.7436 37 1 5.8162 -0.4564 -0.9556 38 1 6.4486 1.5527 -2.9486 39 1 6.3475 -0.2198 -3.1734 40 1 4.3562 2.7710 -4.4233 41 1 4.8935 3.3491 -6.6202 42 1 5.9621 -0.1139 -7.8633 43 1 6.6760 0.0059 -10.3857 44 1 7.3305 3.3246 -11.4745 45 1 6.7615 1.7948 -12.1849 46 1 4.2961 4.9140 -14.6960 47 1 2.4924 1.0828 -2.6780 48 1 3.6467 2.3898 -2.2583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266379601.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:54 Heat of formation + Delta-G solvation = 4.019903 kcal Electronic energy + Delta-G solvation = -28339.643291 eV Core-core repulsion = 24238.345146 eV Total energy + Delta-G solvation = -4101.298145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.24898 -41.16266 -39.96206 -38.45420 -36.28173 -35.63860 -35.16569 -33.26581 -32.51119 -30.95823 -29.64191 -29.23715 -28.65406 -26.89918 -24.82996 -23.91495 -23.18847 -22.15001 -21.83072 -21.43583 -21.15951 -19.27235 -19.06986 -18.27043 -17.64656 -17.54390 -17.10972 -16.83036 -16.55234 -16.21863 -16.08678 -15.85782 -15.68000 -15.31999 -14.87394 -14.80357 -14.51704 -14.43002 -14.21937 -13.91880 -13.81038 -13.75880 -13.23038 -13.05231 -12.87707 -12.56103 -12.50987 -12.36574 -12.29446 -12.20342 -11.82794 -11.81807 -11.66357 -11.58421 -11.46782 -11.13016 -10.86015 -10.52752 -10.23453 -9.73000 -9.35296 -9.03067 -8.36536 -6.46631 1.04194 1.11592 1.37569 1.40646 1.50315 1.69967 2.06899 2.29904 2.40232 2.85164 2.95977 3.00016 3.24986 3.50587 3.75671 3.94432 4.03499 4.16184 4.22233 4.24842 4.26402 4.33514 4.49295 4.53752 4.57237 4.62198 4.64000 4.66716 4.76044 4.85661 4.86359 4.90897 4.93037 4.95087 4.98066 5.04332 5.16323 5.17536 5.25988 5.46711 5.80807 5.88731 5.93473 6.02091 6.03221 6.36615 6.42863 6.58543 6.73154 7.12933 7.16635 7.42468 8.80519 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.001759 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.421828 B =15917.840115 C =16516.270499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.058 3.942 4 C 0.048 3.952 5 N -0.522 5.522 6 C 0.043 3.957 7 C -0.139 4.139 8 C 0.163 3.837 9 H 0.079 0.921 10 N -0.714 5.714 11 C 0.714 3.286 12 O -0.598 6.598 13 N -0.637 5.637 14 C 0.285 3.715 15 C -0.293 4.293 16 C 0.060 3.940 17 N -0.345 5.345 18 C 0.240 3.760 19 C -0.546 4.546 20 H 0.026 0.974 21 C 0.014 3.986 22 N -0.942 5.942 23 Si 0.956 3.044 24 H -0.254 1.254 25 H -0.281 1.281 26 H -0.239 1.239 27 N -0.350 5.350 28 C 0.040 3.960 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.414 0.586 41 H 0.420 0.580 42 H 0.167 0.833 43 H 0.210 0.790 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.272 0.728 47 H 0.086 0.914 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 -5.846 30.244 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.019 4.019 4 C -0.079 4.079 5 N -0.247 5.247 6 C -0.085 4.085 7 C -0.179 4.179 8 C 0.057 3.943 9 H 0.097 0.903 10 N -0.371 5.371 11 C 0.414 3.586 12 O -0.475 6.475 13 N -0.289 5.289 14 C 0.029 3.971 15 C -0.325 4.325 16 C -0.088 4.088 17 N -0.127 5.127 18 C 0.120 3.880 19 C -0.585 4.585 20 H 0.045 0.955 21 C -0.185 4.185 22 N -0.581 5.581 23 Si 0.777 3.223 24 H -0.178 1.178 25 H -0.206 1.206 26 H -0.162 1.162 27 N -0.180 5.180 28 C -0.088 4.088 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.251 0.749 41 H 0.257 0.743 42 H 0.184 0.816 43 H 0.227 0.773 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.191 -6.253 29.424 30.081 hybrid contribution -0.052 1.364 -0.337 1.405 sum 0.139 -4.889 29.087 29.495 Atomic orbital electron populations 1.22849 0.80391 1.03311 1.00461 1.87965 1.20433 1.28444 1.95461 1.22722 0.93186 0.84865 1.01110 1.22404 0.93936 0.98818 0.92775 1.64730 1.09557 1.48592 1.01842 1.22828 0.87683 1.02516 0.95439 1.22793 0.97327 1.02843 0.94905 1.21650 0.95632 0.91241 0.85780 0.90288 1.44821 1.70660 1.13409 1.08189 1.15746 0.78405 0.83842 0.80657 1.90842 1.56410 1.18865 1.81415 1.41393 1.68255 1.12739 1.06506 1.19118 0.98986 0.93102 0.85905 1.21724 1.16500 0.98178 0.96058 1.23233 1.00686 0.88665 0.96168 1.48479 1.48949 1.05843 1.09456 1.19881 0.96241 0.96630 0.75269 1.21240 0.98344 1.36976 1.01896 0.95548 1.25927 1.00682 0.93437 0.98459 1.70048 1.31906 1.37237 1.18925 0.85610 0.78857 0.78987 0.78882 1.17796 1.20636 1.16230 1.77297 1.26180 1.20108 0.94445 1.23348 0.99036 0.97150 0.89292 0.93883 0.89398 0.93075 0.92817 0.91351 0.91045 0.89651 0.91878 0.90093 0.90443 0.91629 0.74871 0.74264 0.81580 0.77336 0.93654 0.90091 0.91904 0.89601 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.61 10.64 -148.98 -1.58 -8.19 16 3 C 0.06 0.62 5.88 71.98 0.42 1.04 16 4 C 0.05 0.50 5.23 86.30 0.45 0.95 16 5 N -0.52 -7.39 5.29 -883.02 -4.67 -12.06 16 6 C 0.04 0.55 6.70 86.45 0.58 1.13 16 7 C -0.14 -2.25 6.67 31.47 0.21 -2.04 16 8 C 0.16 2.90 3.35 46.20 0.15 3.06 16 9 H 0.08 1.89 7.69 -2.39 -0.02 1.87 16 10 N -0.71 -13.05 5.15 -452.08 -2.33 -15.37 16 11 C 0.71 20.24 8.53 179.05 1.53 21.76 16 12 O -0.60 -21.28 13.20 -3.99 -0.05 -21.34 16 13 N -0.64 -19.40 5.46 -321.23 -1.75 -21.16 16 14 C 0.28 11.45 8.11 133.31 1.08 12.53 16 15 C -0.29 -11.42 9.61 22.11 0.21 -11.21 16 16 C 0.06 2.27 11.44 83.52 0.96 3.22 16 17 N -0.35 -15.62 3.67 -351.83 -1.29 -16.91 16 18 C 0.24 11.15 5.33 85.63 0.46 11.61 16 19 C -0.55 -31.68 9.79 25.60 0.25 -31.43 16 20 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 21 C 0.01 0.78 5.47 84.66 0.46 1.24 16 22 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 23 Si 0.96 40.77 27.47 68.60 1.88 42.65 16 24 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 27 N -0.35 -16.32 12.42 -54.43 -0.68 -17.00 16 28 C 0.04 0.52 4.94 86.65 0.43 0.94 16 29 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.52 6.68 -2.39 -0.02 0.51 16 33 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.07 0.45 7.97 -2.39 -0.02 0.43 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.60 7.67 -2.38 -0.02 0.58 16 37 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.08 1.18 8.05 -2.39 -0.02 1.16 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.41 4.74 8.54 -92.70 -0.79 3.95 16 41 H 0.42 10.20 8.84 -92.71 -0.82 9.38 16 42 H 0.17 6.36 5.91 -2.91 -0.02 6.35 16 43 H 0.21 5.78 8.06 -2.91 -0.02 5.76 16 44 H 0.05 2.06 7.20 -2.39 -0.02 2.05 16 45 H 0.08 3.24 7.50 -2.39 -0.02 3.22 16 46 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 47 H 0.09 1.22 7.56 -2.39 -0.02 1.20 16 48 H 0.07 0.61 7.89 -2.39 -0.02 0.59 16 Total: -1.00 -80.78 392.94 -2.41 -83.18 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -0.68 Total: 29.71 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 8.44 Total: 14.34 kcal Atomic # 7 Polarization: -129.94 SS G_CDS: -10.42 Total: -140.35 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.64 Total: -29.53 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.88 Total: 42.65 kcal Total: -80.78 -2.41 -83.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266379601.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.204 kcal (2) G-P(sol) polarization free energy of solvation -80.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds