Wall clock time and date at job start Tue Mar 31 2020 21:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35771 * 116.99876 * 2 1 4 4 N 1.32149 * 120.19120 * 359.97438 * 3 2 1 5 5 N 1.28313 * 122.18259 * 179.97438 * 4 3 2 6 6 C 1.31888 * 122.44452 * 359.97438 * 5 4 3 7 7 C 1.38539 * 120.03747 * 0.02562 * 6 5 4 8 8 C 1.39331 * 117.93506 * 359.97438 * 7 6 5 9 9 N 1.39769 * 121.11003 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00002 * 24.04793 * 9 8 7 11 11 O 1.21586 * 120.00137 * 5.86512 * 10 9 8 12 12 N 1.34777 * 120.00091 * 185.86620 * 10 9 8 13 13 C 1.46494 * 119.99863 * 0.02562 * 12 10 9 14 14 C 1.50702 * 109.47478 * 89.99857 * 13 12 10 15 15 H 1.08006 * 119.99682 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00271 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00124 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99906 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47114 * 60.00037 * 18 16 14 20 20 H 1.48503 * 109.47026 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47270 * 299.99796 * 18 16 14 22 22 C 1.46498 * 120.00249 * 179.97438 * 12 10 9 23 23 C 1.52995 * 109.47166 * 89.99825 * 22 12 10 24 24 C 1.52995 * 109.47143 * 180.02562 * 23 22 12 25 25 N 1.46908 * 109.47149 * 180.02562 * 24 23 22 26 26 C 1.46899 * 110.99892 * 170.00241 * 25 24 23 27 27 C 1.46907 * 110.99594 * 293.95118 * 25 24 23 28 28 H 1.09006 * 109.46623 * 60.00092 * 1 2 3 29 29 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47450 * 300.00314 * 1 2 3 31 31 H 1.07997 * 119.98224 * 180.02562 * 6 5 4 32 32 H 1.07996 * 121.03104 * 179.70335 * 7 6 5 33 33 H 0.97007 * 119.99856 * 204.04196 * 9 8 7 34 34 H 1.09000 * 109.47408 * 209.99520 * 13 12 10 35 35 H 1.09003 * 109.47371 * 329.99849 * 13 12 10 36 36 H 0.96998 * 120.00019 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47601 * 210.00202 * 22 12 10 38 38 H 1.09002 * 109.46990 * 330.00347 * 22 12 10 39 39 H 1.08998 * 109.47308 * 300.00114 * 23 22 12 40 40 H 1.09002 * 109.46739 * 60.00369 * 23 22 12 41 41 H 1.09005 * 109.47660 * 300.00041 * 24 23 22 42 42 H 1.08997 * 109.47498 * 60.00271 * 24 23 22 43 43 H 1.09003 * 109.47468 * 59.99751 * 26 25 24 44 44 H 1.09003 * 109.47089 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.47343 * 299.99229 * 26 25 24 46 46 H 1.08997 * 109.46985 * 60.00174 * 27 25 24 47 47 H 1.09003 * 109.46790 * 180.02562 * 27 25 24 48 48 H 1.08993 * 109.46839 * 300.00216 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 7 1.3293 2.3204 -0.0005 5 7 1.8717 3.4833 0.0000 6 6 3.1795 3.6540 0.0015 7 6 4.0224 2.5545 0.0021 8 6 3.4426 1.2875 0.0016 9 7 4.2302 0.1329 0.0017 10 6 5.4903 0.1768 0.4777 11 8 5.9063 1.1907 1.0043 12 7 6.2893 -0.9033 0.3701 13 6 5.7883 -2.1247 -0.2649 14 6 6.0771 -2.0772 -1.7432 15 1 6.5828 -1.2223 -2.1674 16 6 5.6947 -3.1244 -2.5543 17 7 5.0783 -4.1651 -2.0379 18 14 6.0533 -3.0657 -4.3867 19 1 7.5191 -2.9625 -4.6012 20 1 5.5453 -4.3038 -5.0304 21 1 5.3811 -1.8845 -4.9851 22 6 7.6592 -0.8554 0.8871 23 6 7.6694 -1.3116 2.3474 24 6 9.1000 -1.2610 2.8875 25 7 9.1099 -1.6996 4.2896 26 6 10.4842 -1.8917 4.7714 27 6 8.3805 -0.7519 5.1428 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.5936 4.6514 0.0022 32 1 5.0955 2.6757 -0.0015 33 1 3.8699 -0.7000 -0.3409 34 1 6.2825 -2.9914 0.1741 35 1 4.7125 -2.2012 -0.1071 36 1 4.8090 -4.9017 -2.6087 37 1 8.2940 -1.5154 0.2959 38 1 8.0364 0.1652 0.8227 39 1 7.0347 -0.6516 2.9387 40 1 7.2922 -2.3322 2.4118 41 1 9.7352 -1.9208 2.2964 42 1 9.4768 -0.2403 2.8232 43 1 11.0306 -0.9515 4.6954 44 1 10.4625 -2.2158 5.8119 45 1 10.9794 -2.6498 4.1647 46 1 7.3463 -0.6814 4.8059 47 1 8.4037 -1.1004 6.1753 48 1 8.8507 0.2294 5.0801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288808875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:46 Heat of formation + Delta-G solvation = 7.319003 kcal Electronic energy + Delta-G solvation = -29903.088599 eV Core-core repulsion = 25801.933514 eV Total energy + Delta-G solvation = -4101.155086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.25609 -39.74724 -38.23469 -37.71884 -35.82154 -34.91274 -32.97255 -32.13380 -31.58660 -30.28355 -27.66052 -27.54470 -27.47746 -26.06505 -24.14336 -23.64676 -23.14764 -22.39990 -20.71881 -19.67643 -18.46269 -18.39033 -17.19016 -16.88582 -16.46795 -16.13394 -15.71989 -15.51994 -15.18291 -14.78770 -14.66169 -14.58026 -14.32762 -14.18826 -13.99029 -13.88159 -13.47078 -13.11557 -12.66474 -12.43421 -12.26545 -11.96607 -11.85961 -11.79090 -11.61444 -11.50789 -11.42405 -11.28308 -11.17948 -10.98642 -10.92610 -10.77250 -10.35107 -10.20703 -10.00644 -9.90725 -9.49141 -9.18969 -8.67901 -8.38674 -8.24936 -7.77875 -6.29469 -4.38743 1.01206 1.19290 2.94043 2.98979 3.17845 3.23533 3.25946 3.46081 3.86536 3.94980 4.20210 4.30299 4.36928 4.59186 5.01031 5.04192 5.08914 5.11264 5.16370 5.23391 5.33568 5.34644 5.37391 5.50499 5.59040 5.62958 5.63414 5.68324 5.71539 5.75902 5.82482 5.84880 5.94592 6.07772 6.33373 6.36897 6.51383 6.61343 6.68897 6.95732 6.99253 7.03306 7.09392 7.19584 7.52629 7.64312 7.89340 8.29526 8.68275 8.86865 8.93791 9.30708 10.76826 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006752 B = 0.004368 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4145.834385 B = 6409.368404 C = 9327.032317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.300 6.300 3 C 0.233 3.767 4 N -0.287 5.287 5 N -0.245 5.245 6 C 0.035 3.965 7 C -0.124 4.124 8 C 0.182 3.818 9 N -0.660 5.660 10 C 0.708 3.292 11 O -0.601 6.601 12 N -0.600 5.600 13 C 0.237 3.763 14 C -0.545 4.545 15 H 0.062 0.938 16 C 0.068 3.932 17 N -0.887 5.887 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.139 3.861 23 C -0.131 4.131 24 C 0.059 3.941 25 N -0.548 5.548 26 C 0.025 3.975 27 C 0.022 3.978 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.428 0.572 34 H 0.045 0.955 35 H 0.030 0.970 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.023 0.977 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 6.593 8.138 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.043 3.957 4 N -0.142 5.142 5 N -0.089 5.089 6 C -0.131 4.131 7 C -0.155 4.155 8 C 0.070 3.930 9 N -0.308 5.308 10 C 0.410 3.590 11 O -0.482 6.482 12 N -0.332 5.332 13 C 0.117 3.883 14 C -0.584 4.584 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.725 3.275 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.201 1.201 22 C 0.015 3.985 23 C -0.170 4.170 24 C -0.069 4.069 25 N -0.272 5.272 26 C -0.123 4.123 27 C -0.126 4.126 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.190 0.810 32 H 0.193 0.807 33 H 0.270 0.730 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.050 6.867 8.471 10.905 hybrid contribution 1.602 -0.440 -1.294 2.106 sum 1.652 6.427 7.177 9.774 Atomic orbital electron populations 1.22944 0.76737 1.03400 1.02479 1.86262 1.23205 1.22985 1.87995 1.21303 0.88874 0.87898 0.97660 1.72857 1.31383 0.93835 1.16152 1.72549 1.11837 1.13173 1.11385 1.24019 0.90541 1.00445 0.98127 1.22574 1.04236 0.89484 0.99236 1.17888 0.87271 0.88840 0.98974 1.42754 1.12914 1.11599 1.63494 1.15779 0.80197 0.84162 0.78821 1.90780 1.74597 1.31708 1.51095 1.47432 1.12448 1.13915 1.59410 1.19429 0.94842 0.81186 0.92807 1.21432 1.39930 1.04849 0.92188 0.92004 1.24938 0.94526 0.94976 0.99152 1.69901 1.38706 1.07642 1.36243 0.86550 0.78888 0.77549 0.84474 1.20034 1.21041 1.20120 1.21159 0.82402 1.02084 0.92903 1.21983 0.95878 1.02775 0.96401 1.22069 0.97912 0.98625 0.88305 1.61974 1.14852 1.47546 1.02800 1.22370 0.88933 1.00106 1.00926 1.22425 0.99528 0.93426 0.97222 0.92089 0.88192 0.92172 0.80953 0.80693 0.73045 0.93738 0.95194 0.92265 0.89938 0.90867 0.91816 0.90806 0.90557 0.94761 0.95886 0.91621 0.91323 0.90898 0.91765 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.40 101.05 1.05 1.53 16 2 O -0.30 -4.85 10.01 -19.02 -0.19 -5.04 16 3 C 0.23 3.99 7.60 -16.78 -0.13 3.87 16 4 N -0.29 -4.85 10.40 30.62 0.32 -4.53 16 5 N -0.25 -3.97 11.49 30.53 0.35 -3.62 16 6 C 0.04 0.49 11.30 -17.42 -0.20 0.30 16 7 C -0.12 -1.99 8.87 -39.06 -0.35 -2.33 16 8 C 0.18 3.23 6.51 -83.20 -0.54 2.69 16 9 N -0.66 -12.52 5.18 -13.89 -0.07 -12.59 16 10 C 0.71 14.05 8.11 -86.92 -0.71 13.34 16 11 O -0.60 -12.23 13.16 5.29 0.07 -12.16 16 12 N -0.60 -11.74 2.46 -180.81 -0.44 -12.19 16 13 C 0.24 5.27 4.98 -5.20 -0.03 5.25 16 14 C -0.55 -13.43 9.39 -34.44 -0.32 -13.76 16 15 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -23.45 13.29 55.43 0.74 -22.71 16 18 Si 0.90 19.98 29.54 -169.99 -5.02 14.95 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 22 C 0.14 2.33 5.41 -4.05 -0.02 2.31 16 23 C -0.13 -1.98 5.46 -26.74 -0.15 -2.12 16 24 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 25 N -0.55 -6.83 5.02 -251.25 -1.26 -8.09 16 26 C 0.03 0.25 9.57 60.06 0.57 0.82 16 27 C 0.02 0.26 9.32 60.07 0.56 0.82 16 28 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.69 8.11 -51.93 -0.42 0.26 16 31 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.18 2.87 5.95 -52.49 -0.31 2.56 16 33 H 0.43 8.40 6.12 -40.82 -0.25 8.15 16 34 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 35 H 0.03 0.69 6.28 -51.93 -0.33 0.37 16 36 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 38 H 0.07 1.22 7.42 -51.93 -0.39 0.83 16 39 H 0.06 1.03 6.55 -51.93 -0.34 0.69 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 42 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 43 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 45 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 46 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 47 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 48 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -28.67 397.65 -7.28 -35.95 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.39 Total: 8.95 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: -0.36 Total: 15.08 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -0.37 Total: -63.72 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.12 Total: -17.20 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.67 -7.28 -35.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288808875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.271 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds