Wall clock time and date at job start Tue Mar 31 2020 21:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35771 * 116.99876 * 2 1 4 4 N 1.32149 * 120.19120 * 359.97438 * 3 2 1 5 5 N 1.28313 * 122.18259 * 179.97438 * 4 3 2 6 6 C 1.31888 * 122.44452 * 359.97438 * 5 4 3 7 7 C 1.38539 * 120.03747 * 0.02562 * 6 5 4 8 8 C 1.39331 * 117.93506 * 359.97438 * 7 6 5 9 9 N 1.39769 * 121.11003 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00002 * 24.04793 * 9 8 7 11 11 O 1.21586 * 120.00137 * 5.86512 * 10 9 8 12 12 N 1.34777 * 120.00091 * 185.86620 * 10 9 8 13 13 C 1.46494 * 119.99863 * 0.02562 * 12 10 9 14 14 C 1.50702 * 109.47478 * 89.99857 * 13 12 10 15 15 H 1.08006 * 119.99682 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00271 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00124 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99906 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47114 * 60.00037 * 18 16 14 20 20 H 1.48503 * 109.47026 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47270 * 299.99796 * 18 16 14 22 22 C 1.46498 * 120.00249 * 179.97438 * 12 10 9 23 23 C 1.52995 * 109.47166 * 89.99825 * 22 12 10 24 24 C 1.52995 * 109.47143 * 180.02562 * 23 22 12 25 25 N 1.46908 * 109.47149 * 180.02562 * 24 23 22 26 26 C 1.46899 * 110.99892 * 170.00241 * 25 24 23 27 27 C 1.46907 * 110.99594 * 293.95118 * 25 24 23 28 28 H 1.09006 * 109.46623 * 60.00092 * 1 2 3 29 29 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47450 * 300.00314 * 1 2 3 31 31 H 1.07997 * 119.98224 * 180.02562 * 6 5 4 32 32 H 1.07996 * 121.03104 * 179.70335 * 7 6 5 33 33 H 0.97007 * 119.99856 * 204.04196 * 9 8 7 34 34 H 1.09000 * 109.47408 * 209.99520 * 13 12 10 35 35 H 1.09003 * 109.47371 * 329.99849 * 13 12 10 36 36 H 0.96998 * 120.00019 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47601 * 210.00202 * 22 12 10 38 38 H 1.09002 * 109.46990 * 330.00347 * 22 12 10 39 39 H 1.08998 * 109.47308 * 300.00114 * 23 22 12 40 40 H 1.09002 * 109.46739 * 60.00369 * 23 22 12 41 41 H 1.09005 * 109.47660 * 300.00041 * 24 23 22 42 42 H 1.08997 * 109.47498 * 60.00271 * 24 23 22 43 43 H 1.09003 * 109.47468 * 59.99751 * 26 25 24 44 44 H 1.09003 * 109.47089 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.47343 * 299.99229 * 26 25 24 46 46 H 1.08997 * 109.46985 * 60.00174 * 27 25 24 47 47 H 1.09003 * 109.46790 * 180.02562 * 27 25 24 48 48 H 1.08993 * 109.46839 * 300.00216 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 7 1.3293 2.3204 -0.0005 5 7 1.8717 3.4833 0.0000 6 6 3.1795 3.6540 0.0015 7 6 4.0224 2.5545 0.0021 8 6 3.4426 1.2875 0.0016 9 7 4.2302 0.1329 0.0017 10 6 5.4903 0.1768 0.4777 11 8 5.9063 1.1907 1.0043 12 7 6.2893 -0.9033 0.3701 13 6 5.7883 -2.1247 -0.2649 14 6 6.0771 -2.0772 -1.7432 15 1 6.5828 -1.2223 -2.1674 16 6 5.6947 -3.1244 -2.5543 17 7 5.0783 -4.1651 -2.0379 18 14 6.0533 -3.0657 -4.3867 19 1 7.5191 -2.9625 -4.6012 20 1 5.5453 -4.3038 -5.0304 21 1 5.3811 -1.8845 -4.9851 22 6 7.6592 -0.8554 0.8871 23 6 7.6694 -1.3116 2.3474 24 6 9.1000 -1.2610 2.8875 25 7 9.1099 -1.6996 4.2896 26 6 10.4842 -1.8917 4.7714 27 6 8.3805 -0.7519 5.1428 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.5936 4.6514 0.0022 32 1 5.0955 2.6757 -0.0015 33 1 3.8699 -0.7000 -0.3409 34 1 6.2825 -2.9914 0.1741 35 1 4.7125 -2.2012 -0.1071 36 1 4.8090 -4.9017 -2.6087 37 1 8.2940 -1.5154 0.2959 38 1 8.0364 0.1652 0.8227 39 1 7.0347 -0.6516 2.9387 40 1 7.2922 -2.3322 2.4118 41 1 9.7352 -1.9208 2.2964 42 1 9.4768 -0.2403 2.8232 43 1 11.0306 -0.9515 4.6954 44 1 10.4625 -2.2158 5.8119 45 1 10.9794 -2.6498 4.1647 46 1 7.3463 -0.6814 4.8059 47 1 8.4037 -1.1004 6.1753 48 1 8.8507 0.2294 5.0801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288808875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:45 Heat of formation + Delta-G solvation = -12.789000 kcal Electronic energy + Delta-G solvation = -29903.960548 eV Core-core repulsion = 25801.933514 eV Total energy + Delta-G solvation = -4102.027034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.57543 -41.22062 -39.43455 -38.75145 -37.26051 -36.45051 -34.75835 -33.45995 -32.88093 -31.60740 -29.31391 -28.54742 -28.49352 -27.32179 -25.48455 -24.92146 -24.82890 -23.59783 -21.80358 -21.15164 -19.88546 -19.60042 -18.81303 -18.44470 -18.04017 -17.36106 -16.97002 -16.58333 -16.54216 -16.38269 -15.96073 -15.75972 -15.46370 -15.44644 -15.20716 -15.06121 -14.76276 -14.62232 -14.39642 -13.62217 -13.50251 -13.27243 -12.95958 -12.93960 -12.93181 -12.75732 -12.68119 -12.57279 -12.45208 -12.39155 -12.36879 -12.14478 -11.99238 -11.75677 -11.52381 -11.48907 -10.79220 -10.64477 -10.49690 -9.74720 -9.31643 -9.27940 -8.23162 -6.38556 -0.31150 -0.04340 1.41267 1.42480 1.47639 1.51832 1.82380 1.96558 2.37081 2.57341 2.74737 3.06875 3.07655 3.08821 3.36907 3.79267 3.95957 3.98389 4.11555 4.22752 4.34424 4.39898 4.40665 4.43668 4.47230 4.49845 4.63017 4.64144 4.66998 4.71774 4.73309 4.81760 4.83468 4.99096 5.02172 5.09425 5.12045 5.13130 5.29679 5.33539 5.50825 5.69070 5.93861 5.97530 5.98881 6.05940 6.12603 6.59024 6.82814 7.31031 7.40159 7.61068 8.81756 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006752 B = 0.004368 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4145.834385 B = 6409.368404 C = 9327.032317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.317 6.317 3 C 0.229 3.771 4 N -0.294 5.294 5 N -0.256 5.256 6 C 0.050 3.950 7 C -0.120 4.120 8 C 0.155 3.845 9 N -0.662 5.662 10 C 0.706 3.294 11 O -0.608 6.608 12 N -0.603 5.603 13 C 0.254 3.746 14 C -0.549 4.549 15 H 0.054 0.946 16 C 0.027 3.973 17 N -0.915 5.915 18 Si 0.954 3.046 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.276 1.276 22 C 0.138 3.862 23 C -0.116 4.116 24 C 0.066 3.934 25 N -0.566 5.566 26 C 0.025 3.975 27 C 0.024 3.976 28 H 0.063 0.937 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.173 0.827 33 H 0.422 0.578 34 H 0.031 0.969 35 H 0.020 0.980 36 H 0.269 0.731 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.030 0.970 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 7.602 8.164 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.221 6.221 3 C 0.039 3.961 4 N -0.150 5.150 5 N -0.100 5.100 6 C -0.116 4.116 7 C -0.152 4.152 8 C 0.044 3.956 9 N -0.309 5.309 10 C 0.408 3.592 11 O -0.490 6.490 12 N -0.335 5.335 13 C 0.133 3.867 14 C -0.588 4.588 15 H 0.073 0.927 16 C -0.175 4.175 17 N -0.554 5.554 18 Si 0.779 3.221 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.202 1.202 22 C 0.015 3.985 23 C -0.155 4.155 24 C -0.063 4.063 25 N -0.290 5.290 26 C -0.123 4.123 27 C -0.124 4.124 28 H 0.082 0.918 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.234 0.766 32 H 0.191 0.809 33 H 0.263 0.737 34 H 0.049 0.951 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.098 0.902 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.701 7.897 8.512 11.632 hybrid contribution 1.359 -0.692 -1.258 1.976 sum 2.059 7.206 7.254 10.430 Atomic orbital electron populations 1.23219 0.74796 1.05183 1.02889 1.86252 1.25237 1.22770 1.87872 1.21367 0.88781 0.88317 0.97632 1.72846 1.31638 0.93958 1.16513 1.72524 1.12880 1.12935 1.11622 1.24589 0.89440 1.01715 0.95881 1.22691 1.04377 0.89490 0.98613 1.18192 0.87748 0.89028 1.00582 1.42690 1.12751 1.11884 1.63612 1.15856 0.80462 0.84055 0.78841 1.90761 1.74893 1.31763 1.51540 1.47422 1.13448 1.13107 1.59523 1.19049 0.94087 0.81754 0.91848 1.21605 1.39396 1.04411 0.93338 0.92750 1.25589 0.94450 0.94748 1.02670 1.69988 1.39687 1.08211 1.37468 0.85675 0.78800 0.77373 0.80222 1.19506 1.20741 1.20192 1.21294 0.81035 1.02373 0.93840 1.21794 0.97373 1.01232 0.95126 1.21966 0.96120 0.99197 0.88974 1.61959 1.16548 1.47901 1.02566 1.22424 0.87529 1.00655 1.01661 1.22412 0.98538 0.93636 0.97851 0.91778 0.85789 0.91611 0.76620 0.80934 0.73741 0.95128 0.96210 0.92220 0.89777 0.90500 0.93078 0.92352 0.89768 0.94237 0.95182 0.90400 0.90847 0.92496 0.90214 0.95367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.40 113.37 1.18 1.96 16 2 O -0.32 -10.28 10.01 -90.99 -0.91 -11.20 16 3 C 0.23 7.84 7.60 85.06 0.65 8.49 16 4 N -0.29 -9.71 10.40 -169.89 -1.77 -11.48 16 5 N -0.26 -7.87 11.49 -57.33 -0.66 -8.53 16 6 C 0.05 1.30 11.30 84.76 0.96 2.26 16 7 C -0.12 -3.74 8.87 22.60 0.20 -3.54 16 8 C 0.15 5.50 6.51 38.55 0.25 5.76 16 9 N -0.66 -25.57 5.18 -316.14 -1.64 -27.21 16 10 C 0.71 28.30 8.11 179.06 1.45 29.75 16 11 O -0.61 -24.67 13.16 -3.99 -0.05 -24.72 16 12 N -0.60 -23.98 2.46 -844.23 -2.07 -26.05 16 13 C 0.25 11.53 4.98 85.63 0.43 11.96 16 14 C -0.55 -27.25 9.39 25.60 0.24 -27.01 16 15 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 16 C 0.03 1.35 5.46 84.65 0.46 1.82 16 17 N -0.91 -48.70 13.29 21.45 0.28 -48.41 16 18 Si 0.95 40.73 29.54 68.60 2.03 42.76 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 22 C 0.14 4.65 5.41 86.38 0.47 5.12 16 23 C -0.12 -3.52 5.46 30.59 0.17 -3.35 16 24 C 0.07 1.63 4.96 86.30 0.43 2.06 16 25 N -0.57 -13.44 5.02 -948.81 -4.76 -18.20 16 26 C 0.03 0.45 9.57 127.69 1.22 1.67 16 27 C 0.02 0.52 9.32 127.69 1.19 1.71 16 28 H 0.06 1.45 8.11 -2.38 -0.02 1.43 16 29 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 31 H 0.22 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.17 5.50 5.95 -2.91 -0.02 5.48 16 33 H 0.42 17.12 6.12 -92.70 -0.57 16.55 16 34 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 35 H 0.02 0.95 6.28 -2.39 -0.01 0.94 16 36 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 37 H 0.08 2.78 8.07 -2.39 -0.02 2.77 16 38 H 0.08 2.54 7.42 -2.39 -0.02 2.52 16 39 H 0.05 1.68 6.55 -2.39 -0.02 1.66 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.08 1.95 8.06 -2.38 -0.02 1.93 16 42 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 43 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 45 H 0.07 1.24 8.12 -2.39 -0.02 1.23 16 46 H 0.06 1.42 6.47 -2.39 -0.02 1.40 16 47 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 48 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -60.56 397.65 0.14 -60.41 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.40 Total: 33.97 kcal Atomic # 6 Polarization: 29.37 SS G_CDS: 9.29 Total: 38.66 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -10.61 Total: -139.88 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.96 Total: -35.92 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -60.56 0.14 -60.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288808875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.626 kcal (2) G-P(sol) polarization free energy of solvation -60.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds