Wall clock time and date at job start Tue Mar 31 2020 21:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35997 * 117.00022 * 2 1 4 4 C 1.38620 * 120.88023 * 0.22730 * 3 2 1 5 5 N 1.32529 * 119.11717 * 180.27082 * 4 3 2 6 6 C 1.31740 * 121.02957 * 359.74805 * 5 4 3 7 7 N 1.31802 * 121.94653 * 359.97438 * 6 5 4 8 8 C 1.32813 * 120.75857 * 0.02562 * 7 6 5 9 9 N 1.39196 * 120.54915 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00079 * 359.97438 * 9 8 7 11 11 O 1.21583 * 119.99900 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00097 * 179.72720 * 10 9 8 13 13 C 1.46496 * 119.99875 * 0.26801 * 12 10 9 14 14 C 1.50703 * 109.47067 * 90.00619 * 13 12 10 15 15 H 1.08005 * 119.99711 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00286 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00314 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99869 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47046 * 90.00129 * 18 16 14 20 20 H 1.48497 * 109.46932 * 210.00102 * 18 16 14 21 21 H 1.48496 * 109.47113 * 330.00376 * 18 16 14 22 22 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 23 23 C 1.53000 * 109.47304 * 89.99731 * 22 12 10 24 24 C 1.53000 * 109.47252 * 179.97438 * 23 22 12 25 25 N 1.46894 * 109.47355 * 179.97438 * 24 23 22 26 26 C 1.46904 * 111.00073 * 66.04194 * 25 24 23 27 27 C 1.46898 * 111.00056 * 189.99692 * 25 24 23 28 28 H 1.09004 * 109.46739 * 300.00080 * 1 2 3 29 29 H 1.09007 * 109.46975 * 59.99464 * 1 2 3 30 30 H 1.08994 * 109.47805 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.44506 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.02426 * 180.02562 * 6 5 4 33 33 H 0.97000 * 119.99809 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47346 * 210.00204 * 13 12 10 35 35 H 1.09001 * 109.47115 * 330.00309 * 13 12 10 36 36 H 0.96999 * 120.00313 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.46719 * 209.99532 * 22 12 10 38 38 H 1.08996 * 109.47068 * 329.99428 * 22 12 10 39 39 H 1.09001 * 109.46783 * 299.99848 * 23 22 12 40 40 H 1.08996 * 109.47306 * 59.99842 * 23 22 12 41 41 H 1.08999 * 109.46704 * 300.00299 * 24 23 22 42 42 H 1.08996 * 109.47043 * 59.99744 * 24 23 22 43 43 H 1.09005 * 109.46469 * 60.00373 * 26 25 24 44 44 H 1.09001 * 109.47451 * 179.97438 * 26 25 24 45 45 H 1.08999 * 109.47178 * 300.00539 * 26 25 24 46 46 H 1.09007 * 109.46624 * 60.00290 * 27 25 24 47 47 H 1.09003 * 109.46957 * 179.97438 * 27 25 24 48 48 H 1.08995 * 109.47222 * 299.99817 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.3094 2.3858 0.0047 5 7 1.9471 3.5475 -0.0009 6 6 3.2635 3.5996 -0.0059 7 7 4.0046 2.5097 -0.0051 8 6 3.4427 1.3063 0.0004 9 7 4.2296 0.1581 0.0008 10 6 5.5733 0.2620 -0.0050 11 8 6.0982 1.3587 -0.0110 12 7 6.3352 -0.8497 0.0009 13 6 5.7028 -2.1711 0.0076 14 6 5.4863 -2.6316 -1.4109 15 1 5.7891 -2.0026 -2.2350 16 6 4.9007 -3.8554 -1.6566 17 7 4.7113 -4.2570 -2.8945 18 14 4.3762 -4.9429 -0.2312 19 1 2.9745 -4.6262 0.1434 20 1 4.4705 -6.3686 -0.6357 21 1 5.2666 -4.6983 0.9317 22 6 7.7959 -0.7366 0.0007 23 6 8.3040 -0.6898 1.4431 24 6 9.8295 -0.5724 1.4429 25 7 10.3173 -0.5268 2.8277 26 6 10.0648 -1.7993 3.5170 27 6 11.7436 -0.1780 2.8722 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2299 2.3542 0.0089 32 1 3.7497 4.5640 -0.0100 33 1 3.8108 -0.7168 0.0052 34 1 6.3485 -2.8804 0.5253 35 1 4.7430 -2.1119 0.5210 36 1 4.2989 -5.1178 -3.0674 37 1 8.2269 -1.5986 -0.5085 38 1 8.0896 0.1760 -0.5178 39 1 7.8730 0.1721 1.9523 40 1 8.0103 -1.6025 1.9616 41 1 10.2601 -1.4346 0.9337 42 1 10.1236 0.3400 0.9242 43 1 10.5781 -2.6049 2.9919 44 1 10.4361 -1.7384 4.5400 45 1 8.9934 -1.9990 3.5302 46 1 11.8925 0.8011 2.4168 47 1 12.0788 -0.1508 3.9090 48 1 12.3176 -0.9249 2.3239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297435371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:40 Heat of formation + Delta-G solvation = 15.010708 kcal Electronic energy + Delta-G solvation = -29966.181671 eV Core-core repulsion = 25865.360123 eV Total energy + Delta-G solvation = -4100.821548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.26708 -39.57057 -38.35937 -37.68049 -35.69426 -34.78028 -32.91725 -32.52461 -31.53041 -30.14190 -28.09730 -27.70059 -27.61847 -26.09544 -24.05313 -23.58377 -22.71250 -22.30444 -20.70585 -19.69922 -18.65313 -17.89972 -17.26101 -17.10371 -16.75618 -16.11899 -15.74929 -15.51387 -15.24184 -15.07517 -14.65708 -14.40624 -14.33785 -14.05927 -13.91390 -13.75808 -13.57329 -13.22419 -12.58823 -12.46927 -12.31643 -12.14382 -12.02124 -11.88958 -11.74643 -11.63252 -11.37642 -11.19450 -11.10312 -11.02134 -10.95595 -10.80000 -10.36572 -10.19562 -9.73952 -9.66967 -9.57515 -8.80964 -8.70557 -8.37087 -8.07083 -7.70601 -6.28018 -4.31144 1.13351 1.24496 2.86928 3.07672 3.11264 3.19301 3.21346 3.66219 3.91744 4.15854 4.19088 4.20380 4.32570 4.36587 4.76790 4.97164 5.02314 5.05093 5.05845 5.11783 5.11848 5.26567 5.34971 5.41964 5.51196 5.55315 5.61284 5.65622 5.74739 5.77237 5.83888 5.96324 6.12352 6.25144 6.29121 6.40768 6.49996 6.56370 6.61569 6.93662 7.01169 7.03836 7.09898 7.27074 7.34627 7.53694 8.14425 8.30804 8.52368 8.79320 9.13660 9.30932 10.84426 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007745 B = 0.004300 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3614.232409 B = 6510.065229 C = 9250.958213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C -0.018 4.018 4 C 0.081 3.919 5 N -0.524 5.524 6 C 0.287 3.713 7 N -0.479 5.479 8 C 0.421 3.579 9 N -0.648 5.648 10 C 0.701 3.299 11 O -0.549 6.549 12 N -0.602 5.602 13 C 0.209 3.791 14 C -0.546 4.546 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.887 5.887 18 Si 0.869 3.131 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.264 1.264 22 C 0.141 3.859 23 C -0.131 4.131 24 C 0.059 3.941 25 N -0.548 5.548 26 C 0.021 3.979 27 C 0.025 3.975 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.198 0.802 33 H 0.429 0.571 34 H 0.039 0.961 35 H 0.019 0.981 36 H 0.267 0.733 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.025 0.975 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 6.616 9.906 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C -0.072 4.072 4 C -0.083 4.083 5 N -0.243 5.243 6 C -0.002 4.002 7 N -0.200 5.200 8 C 0.176 3.824 9 N -0.298 5.298 10 C 0.402 3.598 11 O -0.423 6.423 12 N -0.336 5.336 13 C 0.088 3.912 14 C -0.584 4.584 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.524 5.524 18 Si 0.695 3.305 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.189 1.189 22 C 0.016 3.984 23 C -0.170 4.170 24 C -0.070 4.070 25 N -0.272 5.272 26 C -0.127 4.127 27 C -0.123 4.123 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.185 0.815 32 H 0.215 0.785 33 H 0.270 0.730 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.170 8.141 10.019 12.911 hybrid contribution -0.826 -2.705 0.103 2.830 sum -0.996 5.437 10.122 11.533 Atomic orbital electron populations 1.23110 0.77948 1.04584 1.01197 1.86134 1.21650 1.24680 1.89133 1.20201 0.92155 0.87708 1.07146 1.23008 1.00623 0.86372 0.98261 1.68223 1.11709 1.27995 1.16333 1.24775 0.85774 0.96894 0.92785 1.68599 1.38893 0.96354 1.16189 1.18000 0.84345 0.87595 0.92440 1.42937 1.05997 1.07709 1.73190 1.15842 0.80480 0.84990 0.78441 1.90963 1.71257 1.24829 1.55228 1.47093 1.05665 1.05549 1.75334 1.19757 0.92817 0.80312 0.98360 1.21406 1.41681 1.04087 0.91222 0.90212 1.24880 0.94891 0.97296 0.95487 1.69888 1.42596 1.21036 1.18863 0.86968 0.79837 0.80632 0.83080 1.19692 1.20783 1.18855 1.21135 0.78700 1.03010 0.95511 1.21991 0.94036 1.02773 0.98215 1.22070 0.95704 1.01039 0.88142 1.61968 1.16762 1.32103 1.16398 1.22437 1.02315 0.89519 0.98434 1.22366 0.87755 1.00595 1.01609 0.92612 0.92432 0.87707 0.81529 0.78547 0.72997 0.94283 0.96327 0.92296 0.90176 0.90384 0.90842 0.91994 0.94612 0.90536 0.95665 0.91784 0.90902 0.91359 0.91660 0.95809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.84 101.05 0.99 1.25 16 2 O -0.30 -4.44 9.86 -19.73 -0.19 -4.63 16 3 C -0.02 -0.28 6.75 -38.80 -0.26 -0.54 16 4 C 0.08 1.08 10.30 -17.11 -0.18 0.90 16 5 N -0.52 -7.62 10.43 -14.54 -0.15 -7.77 16 6 C 0.29 4.38 12.28 -92.19 -1.13 3.25 16 7 N -0.48 -8.99 8.03 -13.60 -0.11 -9.10 16 8 C 0.42 7.86 7.48 -154.17 -1.15 6.71 16 9 N -0.65 -12.95 5.25 -15.54 -0.08 -13.03 16 10 C 0.70 15.06 8.24 -86.92 -0.72 14.34 16 11 O -0.55 -12.69 14.22 5.29 0.08 -12.62 16 12 N -0.60 -12.29 2.46 -180.81 -0.44 -12.73 16 13 C 0.21 4.51 4.00 -5.19 -0.02 4.48 16 14 C -0.55 -14.06 9.94 -34.44 -0.34 -14.40 16 15 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 16 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 18 Si 0.87 19.17 27.47 -169.99 -4.67 14.50 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 22 C 0.14 2.49 5.41 -4.04 -0.02 2.47 16 23 C -0.13 -2.01 5.46 -26.73 -0.15 -2.16 16 24 C 0.06 0.78 4.96 -3.83 -0.02 0.76 16 25 N -0.55 -6.93 5.02 -251.26 -1.26 -8.19 16 26 C 0.02 0.24 9.32 60.07 0.56 0.80 16 27 C 0.03 0.26 9.57 60.06 0.57 0.83 16 28 H 0.06 0.41 7.70 -51.93 -0.40 0.01 16 29 H 0.06 0.46 7.72 -51.93 -0.40 0.06 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.17 1.60 6.46 -52.49 -0.34 1.26 16 32 H 0.20 2.33 8.06 -52.48 -0.42 1.91 16 33 H 0.43 8.44 5.88 -40.82 -0.24 8.20 16 34 H 0.04 0.82 7.13 -51.93 -0.37 0.45 16 35 H 0.02 0.39 5.78 -51.93 -0.30 0.09 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 38 H 0.08 1.41 7.42 -51.93 -0.39 1.03 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 0.95 6.55 -51.93 -0.34 0.61 16 41 H 0.04 0.46 8.12 -51.93 -0.42 0.03 16 42 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 43 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 45 H 0.07 0.87 6.47 -51.93 -0.34 0.54 16 46 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 47 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 48 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -32.56 393.19 -9.43 -41.99 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.34 Total: 9.49 kcal Atomic # 6 Polarization: 22.62 SS G_CDS: -1.96 Total: 20.66 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -1.27 Total: -75.32 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.12 Total: -17.25 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.67 Total: 14.50 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.56 -9.43 -41.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297435371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.001 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds