Wall clock time and date at job start Tue Mar 31 2020 21:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35997 * 117.00022 * 2 1 4 4 C 1.38620 * 120.88023 * 0.22730 * 3 2 1 5 5 N 1.32529 * 119.11717 * 180.27082 * 4 3 2 6 6 C 1.31740 * 121.02957 * 359.74805 * 5 4 3 7 7 N 1.31802 * 121.94653 * 359.97438 * 6 5 4 8 8 C 1.32813 * 120.75857 * 0.02562 * 7 6 5 9 9 N 1.39196 * 120.54915 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00079 * 359.97438 * 9 8 7 11 11 O 1.21583 * 119.99900 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00097 * 179.72720 * 10 9 8 13 13 C 1.46496 * 119.99875 * 0.26801 * 12 10 9 14 14 C 1.50703 * 109.47067 * 90.00619 * 13 12 10 15 15 H 1.08005 * 119.99711 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00286 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00314 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99869 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47046 * 90.00129 * 18 16 14 20 20 H 1.48497 * 109.46932 * 210.00102 * 18 16 14 21 21 H 1.48496 * 109.47113 * 330.00376 * 18 16 14 22 22 C 1.46504 * 119.99854 * 180.27545 * 12 10 9 23 23 C 1.53000 * 109.47304 * 89.99731 * 22 12 10 24 24 C 1.53000 * 109.47252 * 179.97438 * 23 22 12 25 25 N 1.46894 * 109.47355 * 179.97438 * 24 23 22 26 26 C 1.46904 * 111.00073 * 66.04194 * 25 24 23 27 27 C 1.46898 * 111.00056 * 189.99692 * 25 24 23 28 28 H 1.09004 * 109.46739 * 300.00080 * 1 2 3 29 29 H 1.09007 * 109.46975 * 59.99464 * 1 2 3 30 30 H 1.08994 * 109.47805 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.44506 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.02426 * 180.02562 * 6 5 4 33 33 H 0.97000 * 119.99809 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47346 * 210.00204 * 13 12 10 35 35 H 1.09001 * 109.47115 * 330.00309 * 13 12 10 36 36 H 0.96999 * 120.00313 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.46719 * 209.99532 * 22 12 10 38 38 H 1.08996 * 109.47068 * 329.99428 * 22 12 10 39 39 H 1.09001 * 109.46783 * 299.99848 * 23 22 12 40 40 H 1.08996 * 109.47306 * 59.99842 * 23 22 12 41 41 H 1.08999 * 109.46704 * 300.00299 * 24 23 22 42 42 H 1.08996 * 109.47043 * 59.99744 * 24 23 22 43 43 H 1.09005 * 109.46469 * 60.00373 * 26 25 24 44 44 H 1.09001 * 109.47451 * 179.97438 * 26 25 24 45 45 H 1.08999 * 109.47178 * 300.00539 * 26 25 24 46 46 H 1.09007 * 109.46624 * 60.00290 * 27 25 24 47 47 H 1.09003 * 109.46957 * 179.97438 * 27 25 24 48 48 H 1.08995 * 109.47222 * 299.99817 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.3094 2.3858 0.0047 5 7 1.9471 3.5475 -0.0009 6 6 3.2635 3.5996 -0.0059 7 7 4.0046 2.5097 -0.0051 8 6 3.4427 1.3063 0.0004 9 7 4.2296 0.1581 0.0008 10 6 5.5733 0.2620 -0.0050 11 8 6.0982 1.3587 -0.0110 12 7 6.3352 -0.8497 0.0009 13 6 5.7028 -2.1711 0.0076 14 6 5.4863 -2.6316 -1.4109 15 1 5.7891 -2.0026 -2.2350 16 6 4.9007 -3.8554 -1.6566 17 7 4.7113 -4.2570 -2.8945 18 14 4.3762 -4.9429 -0.2312 19 1 2.9745 -4.6262 0.1434 20 1 4.4705 -6.3686 -0.6357 21 1 5.2666 -4.6983 0.9317 22 6 7.7959 -0.7366 0.0007 23 6 8.3040 -0.6898 1.4431 24 6 9.8295 -0.5724 1.4429 25 7 10.3173 -0.5268 2.8277 26 6 10.0648 -1.7993 3.5170 27 6 11.7436 -0.1780 2.8722 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2299 2.3542 0.0089 32 1 3.7497 4.5640 -0.0100 33 1 3.8108 -0.7168 0.0052 34 1 6.3485 -2.8804 0.5253 35 1 4.7430 -2.1119 0.5210 36 1 4.2989 -5.1178 -3.0674 37 1 8.2269 -1.5986 -0.5085 38 1 8.0896 0.1760 -0.5178 39 1 7.8730 0.1721 1.9523 40 1 8.0103 -1.6025 1.9616 41 1 10.2601 -1.4346 0.9337 42 1 10.1236 0.3400 0.9242 43 1 10.5781 -2.6049 2.9919 44 1 10.4361 -1.7384 4.5400 45 1 8.9934 -1.9990 3.5302 46 1 11.8925 0.8011 2.4168 47 1 12.0788 -0.1508 3.9090 48 1 12.3176 -0.9249 2.3239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297435371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:39 Heat of formation + Delta-G solvation = -7.058112 kcal Electronic energy + Delta-G solvation = -29967.138647 eV Core-core repulsion = 25865.360123 eV Total energy + Delta-G solvation = -4101.778524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.52620 -41.08567 -39.43786 -38.71991 -37.14881 -36.37473 -34.71849 -33.91824 -32.88994 -31.36262 -29.87789 -28.55612 -28.47502 -27.35403 -25.31936 -24.74034 -24.47284 -23.55931 -21.80659 -21.18450 -20.00655 -19.10470 -18.99990 -18.68814 -18.12626 -17.24953 -17.07731 -16.57990 -16.52200 -16.27295 -16.11337 -15.78835 -15.54874 -15.24934 -15.12146 -14.98539 -14.83093 -14.60083 -14.37814 -13.85138 -13.52228 -13.27401 -13.20014 -13.00500 -12.74344 -12.68468 -12.58548 -12.56328 -12.39590 -12.32510 -12.28733 -12.14376 -12.02340 -11.73086 -11.48719 -11.29514 -10.90437 -10.80794 -10.04095 -9.56525 -9.30282 -9.13237 -8.31552 -6.40913 -0.07290 0.02344 1.39122 1.39548 1.43964 1.50951 2.07202 2.13194 2.32758 2.64074 2.85210 3.01585 3.06727 3.17894 3.27785 3.68670 3.73065 3.94234 4.12091 4.23465 4.35992 4.37357 4.42393 4.44167 4.49999 4.51792 4.57415 4.62279 4.66300 4.74010 4.77657 4.78582 4.84286 5.01257 5.02253 5.06623 5.11422 5.24790 5.30430 5.39467 5.50375 5.71653 5.99535 6.07514 6.12785 6.15052 6.22614 6.63480 6.77000 7.15241 7.25947 7.53527 8.84732 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007745 B = 0.004300 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3614.232409 B = 6510.065229 C = 9250.958213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C -0.013 4.013 4 C 0.095 3.905 5 N -0.519 5.519 6 C 0.280 3.720 7 N -0.513 5.513 8 C 0.382 3.618 9 N -0.653 5.653 10 C 0.696 3.304 11 O -0.573 6.573 12 N -0.606 5.606 13 C 0.219 3.781 14 C -0.545 4.545 15 H 0.027 0.973 16 C 0.023 3.977 17 N -0.939 5.939 18 Si 0.939 3.061 19 H -0.258 1.258 20 H -0.285 1.285 21 H -0.239 1.239 22 C 0.139 3.861 23 C -0.113 4.113 24 C 0.065 3.935 25 N -0.566 5.566 26 C 0.021 3.979 27 C 0.025 3.975 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.211 0.789 32 H 0.224 0.776 33 H 0.427 0.573 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.269 0.731 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.029 0.971 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 6.418 12.209 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C -0.067 4.067 4 C -0.069 4.069 5 N -0.236 5.236 6 C -0.008 4.008 7 N -0.235 5.235 8 C 0.140 3.860 9 N -0.303 5.303 10 C 0.397 3.603 11 O -0.449 6.449 12 N -0.340 5.340 13 C 0.097 3.903 14 C -0.583 4.583 15 H 0.045 0.955 16 C -0.176 4.176 17 N -0.578 5.578 18 Si 0.761 3.239 19 H -0.182 1.182 20 H -0.210 1.210 21 H -0.162 1.162 22 C 0.015 3.985 23 C -0.152 4.152 24 C -0.064 4.064 25 N -0.290 5.290 26 C -0.127 4.127 27 C -0.123 4.123 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.228 0.772 32 H 0.240 0.760 33 H 0.268 0.732 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.440 7.977 12.340 14.764 hybrid contribution -0.531 -2.540 -0.704 2.688 sum -1.971 5.438 11.636 12.994 Atomic orbital electron populations 1.23510 0.75191 1.06203 1.03161 1.86116 1.24505 1.24305 1.88937 1.20206 0.91119 0.88960 1.06458 1.23698 1.02334 0.85059 0.95848 1.68337 1.11268 1.28403 1.15638 1.25307 0.86215 0.97012 0.92307 1.68509 1.40672 0.97224 1.17076 1.18303 0.85711 0.87276 0.94743 1.42833 1.05461 1.08295 1.73749 1.16041 0.81123 0.84853 0.78288 1.90923 1.71895 1.25563 1.56524 1.47184 1.06611 1.04992 1.75236 1.19586 0.93942 0.80968 0.95789 1.21477 1.41313 1.03566 0.91982 0.95453 1.25783 0.94672 0.98787 0.98372 1.70053 1.44205 1.21840 1.21711 0.85849 0.80418 0.77810 0.79850 1.18235 1.21028 1.16189 1.21249 0.77535 1.02485 0.97189 1.21772 0.95544 1.01914 0.95955 1.21954 0.93971 1.01363 0.89093 1.61952 1.18399 1.32944 1.15679 1.22461 1.01864 0.89116 0.99263 1.22418 0.86335 1.00829 1.02700 0.90075 0.90895 0.86482 0.77222 0.75963 0.73242 0.92746 0.94796 0.92181 0.90051 0.91432 0.92872 0.91629 0.93942 0.90532 0.95234 0.90216 0.91829 0.91166 0.90255 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.84 113.37 1.12 1.32 16 2 O -0.33 -9.03 9.86 -93.51 -0.92 -9.95 16 3 C -0.01 -0.40 6.75 22.78 0.15 -0.25 16 4 C 0.10 2.29 10.30 84.68 0.87 3.16 16 5 N -0.52 -14.02 10.43 -199.93 -2.09 -16.10 16 6 C 0.28 8.35 12.28 180.90 2.22 10.58 16 7 N -0.51 -19.57 8.03 -196.95 -1.58 -21.15 16 8 C 0.38 14.46 7.48 133.07 1.00 15.46 16 9 N -0.65 -26.82 5.25 -321.33 -1.69 -28.51 16 10 C 0.70 30.96 8.24 179.06 1.48 32.44 16 11 O -0.57 -27.61 14.22 -3.98 -0.06 -27.66 16 12 N -0.61 -25.38 2.46 -844.22 -2.07 -27.45 16 13 C 0.22 9.42 4.00 85.63 0.34 9.76 16 14 C -0.54 -28.88 9.94 25.60 0.25 -28.63 16 15 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 16 C 0.02 1.24 5.47 84.65 0.46 1.71 16 17 N -0.94 -55.04 13.96 21.44 0.30 -54.74 16 18 Si 0.94 38.73 27.47 68.60 1.88 40.62 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.24 -8.83 6.54 99.48 0.65 -8.18 16 22 C 0.14 5.05 5.41 86.38 0.47 5.52 16 23 C -0.11 -3.47 5.46 30.59 0.17 -3.31 16 24 C 0.06 1.67 4.96 86.30 0.43 2.10 16 25 N -0.57 -13.55 5.02 -948.85 -4.76 -18.32 16 26 C 0.02 0.44 9.32 127.69 1.19 1.63 16 27 C 0.03 0.47 9.57 127.69 1.22 1.69 16 28 H 0.08 0.87 7.70 -2.38 -0.02 0.85 16 29 H 0.07 0.92 7.72 -2.38 -0.02 0.91 16 30 H 0.12 1.55 8.14 -2.39 -0.02 1.54 16 31 H 0.21 3.07 6.46 -2.91 -0.02 3.06 16 32 H 0.22 5.07 8.06 -2.91 -0.02 5.05 16 33 H 0.43 17.16 5.88 -92.71 -0.54 16.61 16 34 H 0.05 2.20 7.13 -2.39 -0.02 2.18 16 35 H 0.03 1.38 5.78 -2.39 -0.01 1.37 16 36 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.08 2.90 8.07 -2.39 -0.02 2.88 16 38 H 0.07 2.58 7.42 -2.39 -0.02 2.56 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 1.96 6.55 -2.39 -0.02 1.95 16 41 H 0.04 1.04 8.12 -2.39 -0.02 1.02 16 42 H 0.08 1.96 8.06 -2.39 -0.02 1.94 16 43 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.08 1.40 8.12 -2.39 -0.02 1.39 16 45 H 0.06 1.44 6.47 -2.39 -0.02 1.42 16 46 H 0.07 1.27 8.12 -2.38 -0.02 1.25 16 47 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 48 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -73.80 393.19 0.76 -73.04 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: 0.37 Total: 37.04 kcal Atomic # 6 Polarization: 41.82 SS G_CDS: 11.37 Total: 53.18 kcal Atomic # 7 Polarization: -154.38 SS G_CDS: -11.89 Total: -166.27 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.98 Total: -37.61 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.88 Total: 40.62 kcal Total: -73.80 0.76 -73.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297435371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.985 kcal (2) G-P(sol) polarization free energy of solvation -73.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds