Wall clock time and date at job start Tue Mar 31 2020 21:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00390 * 2 1 4 4 C 1.46898 * 110.99782 * 123.95757 * 2 1 3 5 5 C 1.52999 * 109.47035 * 170.00063 * 4 2 1 6 6 H 1.08997 * 109.51680 * 60.09946 * 5 4 2 7 7 C 1.53716 * 109.48362 * 180.35900 * 5 4 2 8 8 N 1.47153 * 108.16279 * 172.39706 * 7 5 4 9 9 C 1.34776 * 120.98526 * 129.43213 * 8 7 5 10 10 O 1.21596 * 119.99645 * 4.70699 * 9 8 7 11 11 N 1.34776 * 120.00325 * 184.70703 * 9 8 7 12 12 C 1.40199 * 119.99962 * 175.01675 * 11 9 8 13 13 C 1.40399 * 125.97029 * 359.72416 * 12 11 9 14 14 C 1.35242 * 107.86371 * 180.02562 * 13 12 11 15 15 N 1.34970 * 107.86056 * 359.97438 * 14 13 12 16 16 C 1.46494 * 125.97445 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47468 * 125.00133 * 16 15 14 18 18 H 1.08007 * 119.99913 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00650 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99771 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00564 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46940 * 89.99696 * 21 19 17 23 23 H 1.48500 * 109.47204 * 209.99821 * 21 19 17 24 24 H 1.48502 * 109.46716 * 330.00056 * 21 19 17 25 25 N 1.31207 * 125.96708 * 179.41483 * 12 11 9 26 26 C 1.47156 * 118.03621 * 309.15825 * 8 7 5 27 27 C 1.53301 * 108.38224 * 50.78691 * 26 8 7 28 28 O 1.42963 * 109.51288 * 299.99438 * 5 4 2 29 29 H 1.09002 * 109.47092 * 296.04735 * 1 2 3 30 30 H 1.09000 * 109.46421 * 56.04612 * 1 2 3 31 31 H 1.09002 * 109.47297 * 176.04308 * 1 2 3 32 32 H 1.08995 * 109.47511 * 183.95395 * 3 2 1 33 33 H 1.09002 * 109.46807 * 303.95355 * 3 2 1 34 34 H 1.09001 * 109.46810 * 63.95400 * 3 2 1 35 35 H 1.08990 * 109.47721 * 49.99591 * 4 2 1 36 36 H 1.09008 * 109.47140 * 289.99378 * 4 2 1 37 37 H 1.08999 * 109.83677 * 52.71645 * 7 5 4 38 38 H 1.08999 * 109.74895 * 292.02291 * 7 5 4 39 39 H 0.97003 * 119.99491 * 354.73500 * 11 9 8 40 40 H 1.07997 * 126.06956 * 359.97438 * 13 12 11 41 41 H 1.07998 * 126.07113 * 180.02562 * 14 13 12 42 42 H 1.09008 * 109.46858 * 244.99939 * 16 15 14 43 43 H 1.08998 * 109.47671 * 4.99399 * 16 15 14 44 44 H 0.96995 * 119.99863 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.68139 * 170.50393 * 26 8 7 46 46 H 1.08999 * 109.68286 * 291.03074 * 26 8 7 47 47 H 1.08995 * 109.51102 * 67.62104 * 27 26 8 48 48 H 1.08995 * 109.51115 * 187.72720 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9554 0.9703 6 1 3.9918 0.0188 0.9340 7 6 4.0541 -1.7647 2.1560 8 7 5.4627 -2.0870 1.8777 9 6 6.4247 -1.8359 2.7875 10 8 6.1253 -1.4158 3.8887 11 7 7.7186 -2.0503 2.4769 12 6 8.7259 -1.6915 3.3837 13 6 8.5305 -1.0989 4.6414 14 6 9.7455 -0.9105 5.2045 15 7 10.6773 -1.3655 4.3405 16 6 12.1266 -1.3538 4.5531 17 6 12.6706 -2.7488 4.3830 18 1 12.0033 -3.5629 4.1412 19 6 14.0201 -2.9861 4.5361 20 7 14.8329 -1.9947 4.8301 21 14 14.6943 -4.7155 4.3259 22 1 15.0704 -4.9309 2.9055 23 1 15.8920 -4.8879 5.1867 24 1 13.6564 -5.7024 4.7184 25 7 10.0156 -1.8561 3.2075 26 6 5.7891 -2.6972 0.5790 27 6 5.1542 -1.8473 -0.5277 28 8 3.7650 -1.6653 -0.2430 29 1 -0.3633 0.4513 0.9233 30 1 -0.3632 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0828 1.3432 -0.0709 33 1 1.5899 1.9163 -0.8525 34 1 1.7045 1.8723 0.9233 35 1 1.5090 -1.7406 1.1756 36 1 1.7975 -0.2248 2.0628 37 1 3.4827 -2.6857 2.2717 38 1 3.9863 -1.1729 3.0688 39 1 7.9525 -2.4566 1.6278 40 1 7.5788 -0.8387 5.0807 41 1 9.9364 -0.4744 6.1739 42 1 12.5951 -0.6900 3.8263 43 1 12.3433 -0.9997 5.5609 44 1 15.7823 -2.1615 4.9374 45 1 6.8707 -2.7230 0.4470 46 1 5.3899 -3.7107 0.5389 47 1 5.6476 -0.8763 -0.5694 48 1 5.2667 -2.3544 -1.4859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330636591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:11 Heat of formation + Delta-G solvation = 40.306424 kcal Electronic energy + Delta-G solvation = -29122.791621 eV Core-core repulsion = 25023.066978 eV Total energy + Delta-G solvation = -4099.724644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01865 -40.17165 -38.90062 -37.36568 -34.93207 -34.86251 -33.35255 -32.37077 -30.87790 -29.30757 -28.82700 -27.98003 -27.13241 -26.24561 -23.98705 -23.36973 -22.62335 -21.36798 -20.89020 -20.28198 -19.28562 -18.17433 -17.04519 -16.70438 -16.56768 -16.20911 -16.07650 -15.66391 -15.44140 -15.30484 -15.00082 -14.62627 -14.57897 -14.30556 -14.03434 -13.92474 -13.50835 -12.87676 -12.80715 -12.69755 -12.59697 -12.35308 -12.22966 -12.11849 -12.02854 -11.85081 -11.79514 -11.50703 -11.05524 -10.91492 -10.85667 -10.46654 -10.32102 -10.25780 -10.10719 -9.71399 -9.49325 -8.82182 -8.71839 -8.63264 -8.11775 -7.42986 -6.24489 -4.29490 2.17667 2.61894 3.04959 3.23475 3.28798 3.29298 3.34444 3.36164 3.53454 3.79759 4.03798 4.32268 4.38835 4.50627 4.59096 4.64342 4.74654 4.83909 4.89125 4.97532 5.01549 5.10603 5.14285 5.22544 5.26072 5.34069 5.36761 5.41941 5.49384 5.53065 5.55410 5.65219 5.79167 5.99630 6.27396 6.52034 6.53281 6.58656 6.61389 6.79090 6.88743 6.94506 7.07464 7.45848 7.68228 7.76349 7.91847 8.05643 8.49175 8.64560 8.80431 9.36110 10.84177 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.002005 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.627971 B =13963.828319 C =14433.756146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.537 5.537 3 C 0.020 3.980 4 C 0.063 3.937 5 C 0.081 3.919 6 H 0.065 0.935 7 C 0.105 3.895 8 N -0.631 5.631 9 C 0.719 3.281 10 O -0.564 6.564 11 N -0.643 5.643 12 C 0.274 3.726 13 C -0.286 4.286 14 C 0.052 3.948 15 N -0.320 5.320 16 C 0.258 3.742 17 C -0.528 4.528 18 H 0.069 0.931 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.307 5.307 26 C 0.072 3.928 27 C 0.048 3.952 28 O -0.356 6.356 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.405 0.595 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.267 0.733 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.056 0.944 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.244 3.644 -9.847 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.260 5.260 3 C -0.128 4.128 4 C -0.065 4.065 5 C 0.022 3.978 6 H 0.083 0.917 7 C -0.019 4.019 8 N -0.370 5.370 9 C 0.420 3.580 10 O -0.439 6.439 11 N -0.295 5.295 12 C 0.020 3.980 13 C -0.318 4.318 14 C -0.098 4.098 15 N -0.102 5.102 16 C 0.141 3.859 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.138 5.138 26 C -0.051 4.051 27 C -0.030 4.030 28 O -0.274 6.274 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.243 0.757 40 H 0.177 0.823 41 H 0.185 0.815 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.074 0.926 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.207 3.301 -10.314 27.435 hybrid contribution 0.119 -0.392 0.860 0.953 sum -25.088 2.908 -9.454 26.967 Atomic orbital electron populations 1.22390 0.87041 1.02417 1.00472 1.61880 1.07757 1.13736 1.42658 1.22462 1.01151 0.88664 1.00519 1.22092 0.93019 0.99441 0.91990 1.22610 0.95508 0.94878 0.84819 0.91729 1.22200 0.79798 1.00720 0.99218 1.47175 1.06809 1.66568 1.16471 1.15466 0.79913 0.78789 0.83820 1.90863 1.80942 1.51675 1.20415 1.41541 1.02840 1.64619 1.20467 1.18789 0.87572 1.00635 0.90975 1.21483 0.98817 1.15251 0.96220 1.22551 0.88880 1.01090 0.97294 1.49061 1.08295 1.42542 1.10258 1.19740 0.68415 0.99412 0.98341 1.21259 0.93148 0.93177 1.49057 0.91312 1.24949 0.96476 0.98040 0.94642 1.69921 1.04441 1.31370 1.47627 0.86325 0.78365 0.83559 0.78224 1.20349 1.20983 1.19739 1.77319 1.02384 1.24483 1.09620 1.22436 1.01228 0.98071 0.83393 1.22953 0.82814 0.99394 0.97790 1.88074 1.22800 1.76379 1.40166 0.95713 0.91279 0.91200 0.91244 0.91264 0.95583 0.89530 0.92839 0.90589 0.87828 0.75747 0.82286 0.81492 0.93739 0.92517 0.92340 0.89377 0.90007 0.92605 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.57 60.07 0.57 0.72 16 2 N -0.54 -4.16 4.89 -251.26 -1.23 -5.39 16 3 C 0.02 0.14 9.32 60.06 0.56 0.70 16 4 C 0.06 0.46 4.66 -3.83 -0.02 0.44 16 5 C 0.08 0.69 2.66 -26.36 -0.07 0.62 16 6 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 7 C 0.10 0.99 5.94 -3.31 -0.02 0.97 16 8 N -0.63 -7.07 3.01 -177.74 -0.54 -7.61 16 9 C 0.72 10.97 8.28 -86.92 -0.72 10.25 16 10 O -0.56 -10.24 12.99 5.28 0.07 -10.18 16 11 N -0.64 -10.30 5.37 -15.50 -0.08 -10.38 16 12 C 0.27 5.58 8.11 -154.36 -1.25 4.33 16 13 C -0.29 -5.76 9.61 -39.84 -0.38 -6.14 16 14 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 15 N -0.32 -7.46 3.67 -62.57 -0.23 -7.69 16 16 C 0.26 6.57 6.26 -5.20 -0.03 6.54 16 17 C -0.53 -14.70 9.23 -34.44 -0.32 -15.02 16 18 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.90 -25.30 13.29 55.43 0.74 -24.56 16 21 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 N -0.31 -7.09 12.42 31.44 0.39 -6.70 16 26 C 0.07 0.60 6.63 -3.53 -0.02 0.57 16 27 C 0.05 0.37 6.99 37.31 0.26 0.63 16 28 O -0.36 -3.34 10.25 -35.23 -0.36 -3.71 16 29 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.07 0.52 6.47 -51.93 -0.34 0.19 16 33 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 34 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 36 H 0.05 0.34 8.12 -51.92 -0.42 -0.08 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.08 7.12 -51.93 -0.37 0.71 16 39 H 0.41 5.36 6.34 -40.82 -0.26 5.10 16 40 H 0.16 3.14 5.93 -52.49 -0.31 2.83 16 41 H 0.17 2.74 8.06 -52.49 -0.42 2.31 16 42 H 0.04 1.19 8.14 -51.92 -0.42 0.77 16 43 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.09 0.66 5.66 -51.93 -0.29 0.36 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -33.70 388.74 -9.50 -43.20 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.36 Total: 3.74 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.73 Total: 7.06 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.95 Total: -62.33 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.29 Total: -13.88 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.70 -9.50 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330636591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.510 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds