Wall clock time and date at job start Tue Mar 31 2020 21:20:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46900 * 111.00390 * 2 1
4 4 C 1.46898 * 110.99782 * 123.95757 * 2 1 3
5 5 C 1.52999 * 109.47035 * 170.00063 * 4 2 1
6 6 H 1.08997 * 109.51680 * 60.09946 * 5 4 2
7 7 C 1.53716 * 109.48362 * 180.35900 * 5 4 2
8 8 N 1.47153 * 108.16279 * 172.39706 * 7 5 4
9 9 C 1.34776 * 120.98526 * 129.43213 * 8 7 5
10 10 O 1.21596 * 119.99645 * 4.70699 * 9 8 7
11 11 N 1.34776 * 120.00325 * 184.70703 * 9 8 7
12 12 C 1.40199 * 119.99962 * 175.01675 * 11 9 8
13 13 C 1.40399 * 125.97029 * 359.72416 * 12 11 9
14 14 C 1.35242 * 107.86371 * 180.02562 * 13 12 11
15 15 N 1.34970 * 107.86056 * 359.97438 * 14 13 12
16 16 C 1.46494 * 125.97445 * 180.02562 * 15 14 13
17 17 C 1.50694 * 109.47468 * 125.00133 * 16 15 14
18 18 H 1.08007 * 119.99913 * 359.97438 * 17 16 15
19 19 C 1.37874 * 120.00650 * 179.97438 * 17 16 15
20 20 N 1.31523 * 119.99771 * 359.97438 * 19 17 16
21 21 Si 1.86804 * 120.00564 * 179.97438 * 19 17 16
22 22 H 1.48506 * 109.46940 * 89.99696 * 21 19 17
23 23 H 1.48500 * 109.47204 * 209.99821 * 21 19 17
24 24 H 1.48502 * 109.46716 * 330.00056 * 21 19 17
25 25 N 1.31207 * 125.96708 * 179.41483 * 12 11 9
26 26 C 1.47156 * 118.03621 * 309.15825 * 8 7 5
27 27 C 1.53301 * 108.38224 * 50.78691 * 26 8 7
28 28 O 1.42963 * 109.51288 * 299.99438 * 5 4 2
29 29 H 1.09002 * 109.47092 * 296.04735 * 1 2 3
30 30 H 1.09000 * 109.46421 * 56.04612 * 1 2 3
31 31 H 1.09002 * 109.47297 * 176.04308 * 1 2 3
32 32 H 1.08995 * 109.47511 * 183.95395 * 3 2 1
33 33 H 1.09002 * 109.46807 * 303.95355 * 3 2 1
34 34 H 1.09001 * 109.46810 * 63.95400 * 3 2 1
35 35 H 1.08990 * 109.47721 * 49.99591 * 4 2 1
36 36 H 1.09008 * 109.47140 * 289.99378 * 4 2 1
37 37 H 1.08999 * 109.83677 * 52.71645 * 7 5 4
38 38 H 1.08999 * 109.74895 * 292.02291 * 7 5 4
39 39 H 0.97003 * 119.99491 * 354.73500 * 11 9 8
40 40 H 1.07997 * 126.06956 * 359.97438 * 13 12 11
41 41 H 1.07998 * 126.07113 * 180.02562 * 14 13 12
42 42 H 1.09008 * 109.46858 * 244.99939 * 16 15 14
43 43 H 1.08998 * 109.47671 * 4.99399 * 16 15 14
44 44 H 0.96995 * 119.99863 * 180.02562 * 20 19 17
45 45 H 1.08993 * 109.68139 * 170.50393 * 26 8 7
46 46 H 1.08999 * 109.68286 * 291.03074 * 26 8 7
47 47 H 1.08995 * 109.51102 * 67.62104 * 27 26 8
48 48 H 1.08995 * 109.51115 * 187.72720 * 27 26 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9956 1.3714 0.0000
4 6 1.9954 -0.7661 1.1375
5 6 3.5044 -0.9554 0.9703
6 1 3.9918 0.0188 0.9340
7 6 4.0541 -1.7647 2.1560
8 7 5.4627 -2.0870 1.8777
9 6 6.4247 -1.8359 2.7875
10 8 6.1253 -1.4158 3.8887
11 7 7.7186 -2.0503 2.4769
12 6 8.7259 -1.6915 3.3837
13 6 8.5305 -1.0989 4.6414
14 6 9.7455 -0.9105 5.2045
15 7 10.6773 -1.3655 4.3405
16 6 12.1266 -1.3538 4.5531
17 6 12.6706 -2.7488 4.3830
18 1 12.0033 -3.5629 4.1412
19 6 14.0201 -2.9861 4.5361
20 7 14.8329 -1.9947 4.8301
21 14 14.6943 -4.7155 4.3259
22 1 15.0704 -4.9309 2.9055
23 1 15.8920 -4.8879 5.1867
24 1 13.6564 -5.7024 4.7184
25 7 10.0156 -1.8561 3.2075
26 6 5.7891 -2.6972 0.5790
27 6 5.1542 -1.8473 -0.5277
28 8 3.7650 -1.6653 -0.2430
29 1 -0.3633 0.4513 0.9233
30 1 -0.3632 0.5740 -0.8525
31 1 -0.3634 -1.0252 -0.0709
32 1 3.0828 1.3432 -0.0709
33 1 1.5899 1.9163 -0.8525
34 1 1.7045 1.8723 0.9233
35 1 1.5090 -1.7406 1.1756
36 1 1.7975 -0.2248 2.0628
37 1 3.4827 -2.6857 2.2717
38 1 3.9863 -1.1729 3.0688
39 1 7.9525 -2.4566 1.6278
40 1 7.5788 -0.8387 5.0807
41 1 9.9364 -0.4744 6.1739
42 1 12.5951 -0.6900 3.8263
43 1 12.3433 -0.9997 5.5609
44 1 15.7823 -2.1615 4.9374
45 1 6.8707 -2.7230 0.4470
46 1 5.3899 -3.7107 0.5389
47 1 5.6476 -0.8763 -0.5694
48 1 5.2667 -2.3544 -1.4859
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000330636591.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:20:11
Heat of formation + Delta-G solvation = 40.306424 kcal
Electronic energy + Delta-G solvation = -29122.791621 eV
Core-core repulsion = 25023.066978 eV
Total energy + Delta-G solvation = -4099.724644 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.190 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.01865 -40.17165 -38.90062 -37.36568 -34.93207 -34.86251 -33.35255 -32.37077
-30.87790 -29.30757 -28.82700 -27.98003 -27.13241 -26.24561 -23.98705 -23.36973
-22.62335 -21.36798 -20.89020 -20.28198 -19.28562 -18.17433 -17.04519 -16.70438
-16.56768 -16.20911 -16.07650 -15.66391 -15.44140 -15.30484 -15.00082 -14.62627
-14.57897 -14.30556 -14.03434 -13.92474 -13.50835 -12.87676 -12.80715 -12.69755
-12.59697 -12.35308 -12.22966 -12.11849 -12.02854 -11.85081 -11.79514 -11.50703
-11.05524 -10.91492 -10.85667 -10.46654 -10.32102 -10.25780 -10.10719 -9.71399
-9.49325 -8.82182 -8.71839 -8.63264 -8.11775 -7.42986 -6.24489 -4.29490
2.17667 2.61894 3.04959 3.23475 3.28798 3.29298 3.34444 3.36164
3.53454 3.79759 4.03798 4.32268 4.38835 4.50627 4.59096 4.64342
4.74654 4.83909 4.89125 4.97532 5.01549 5.10603 5.14285 5.22544
5.26072 5.34069 5.36761 5.41941 5.49384 5.53065 5.55410 5.65219
5.79167 5.99630 6.27396 6.52034 6.53281 6.58656 6.61389 6.79090
6.88743 6.94506 7.07464 7.45848 7.68228 7.76349 7.91847 8.05643
8.49175 8.64560 8.80431 9.36110 10.84177
Molecular weight = 337.19amu
Principal moments of inertia in cm(-1)
A = 0.026543 B = 0.002005 C = 0.001939
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1054.627971 B =13963.828319 C =14433.756146
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.537 5.537
3 C 0.020 3.980
4 C 0.063 3.937
5 C 0.081 3.919
6 H 0.065 0.935
7 C 0.105 3.895
8 N -0.631 5.631
9 C 0.719 3.281
10 O -0.564 6.564
11 N -0.643 5.643
12 C 0.274 3.726
13 C -0.286 4.286
14 C 0.052 3.948
15 N -0.320 5.320
16 C 0.258 3.742
17 C -0.528 4.528
18 H 0.069 0.931
19 C 0.062 3.938
20 N -0.895 5.895
21 Si 0.908 3.092
22 H -0.278 1.278
23 H -0.284 1.284
24 H -0.273 1.273
25 N -0.307 5.307
26 C 0.072 3.928
27 C 0.048 3.952
28 O -0.356 6.356
29 H 0.024 0.976
30 H 0.068 0.932
31 H 0.069 0.931
32 H 0.069 0.931
33 H 0.069 0.931
34 H 0.026 0.974
35 H 0.086 0.914
36 H 0.054 0.946
37 H 0.076 0.924
38 H 0.103 0.897
39 H 0.405 0.595
40 H 0.160 0.840
41 H 0.168 0.832
42 H 0.045 0.955
43 H 0.057 0.943
44 H 0.267 0.733
45 H 0.088 0.912
46 H 0.082 0.918
47 H 0.056 0.944
48 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.244 3.644 -9.847 28.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.260 5.260
3 C -0.128 4.128
4 C -0.065 4.065
5 C 0.022 3.978
6 H 0.083 0.917
7 C -0.019 4.019
8 N -0.370 5.370
9 C 0.420 3.580
10 O -0.439 6.439
11 N -0.295 5.295
12 C 0.020 3.980
13 C -0.318 4.318
14 C -0.098 4.098
15 N -0.102 5.102
16 C 0.141 3.859
17 C -0.566 4.566
18 H 0.087 0.913
19 C -0.141 4.141
20 N -0.534 5.534
21 Si 0.735 3.265
22 H -0.203 1.203
23 H -0.210 1.210
24 H -0.197 1.197
25 N -0.138 5.138
26 C -0.051 4.051
27 C -0.030 4.030
28 O -0.274 6.274
29 H 0.043 0.957
30 H 0.087 0.913
31 H 0.088 0.912
32 H 0.088 0.912
33 H 0.087 0.913
34 H 0.044 0.956
35 H 0.105 0.895
36 H 0.072 0.928
37 H 0.094 0.906
38 H 0.122 0.878
39 H 0.243 0.757
40 H 0.177 0.823
41 H 0.185 0.815
42 H 0.063 0.937
43 H 0.075 0.925
44 H 0.077 0.923
45 H 0.106 0.894
46 H 0.100 0.900
47 H 0.074 0.926
48 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -25.207 3.301 -10.314 27.435
hybrid contribution 0.119 -0.392 0.860 0.953
sum -25.088 2.908 -9.454 26.967
Atomic orbital electron populations
1.22390 0.87041 1.02417 1.00472 1.61880 1.07757 1.13736 1.42658
1.22462 1.01151 0.88664 1.00519 1.22092 0.93019 0.99441 0.91990
1.22610 0.95508 0.94878 0.84819 0.91729 1.22200 0.79798 1.00720
0.99218 1.47175 1.06809 1.66568 1.16471 1.15466 0.79913 0.78789
0.83820 1.90863 1.80942 1.51675 1.20415 1.41541 1.02840 1.64619
1.20467 1.18789 0.87572 1.00635 0.90975 1.21483 0.98817 1.15251
0.96220 1.22551 0.88880 1.01090 0.97294 1.49061 1.08295 1.42542
1.10258 1.19740 0.68415 0.99412 0.98341 1.21259 0.93148 0.93177
1.49057 0.91312 1.24949 0.96476 0.98040 0.94642 1.69921 1.04441
1.31370 1.47627 0.86325 0.78365 0.83559 0.78224 1.20349 1.20983
1.19739 1.77319 1.02384 1.24483 1.09620 1.22436 1.01228 0.98071
0.83393 1.22953 0.82814 0.99394 0.97790 1.88074 1.22800 1.76379
1.40166 0.95713 0.91279 0.91200 0.91244 0.91264 0.95583 0.89530
0.92839 0.90589 0.87828 0.75747 0.82286 0.81492 0.93739 0.92517
0.92340 0.89377 0.90007 0.92605 0.87391
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.15 9.57 60.07 0.57 0.72 16
2 N -0.54 -4.16 4.89 -251.26 -1.23 -5.39 16
3 C 0.02 0.14 9.32 60.06 0.56 0.70 16
4 C 0.06 0.46 4.66 -3.83 -0.02 0.44 16
5 C 0.08 0.69 2.66 -26.36 -0.07 0.62 16
6 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16
7 C 0.10 0.99 5.94 -3.31 -0.02 0.97 16
8 N -0.63 -7.07 3.01 -177.74 -0.54 -7.61 16
9 C 0.72 10.97 8.28 -86.92 -0.72 10.25 16
10 O -0.56 -10.24 12.99 5.28 0.07 -10.18 16
11 N -0.64 -10.30 5.37 -15.50 -0.08 -10.38 16
12 C 0.27 5.58 8.11 -154.36 -1.25 4.33 16
13 C -0.29 -5.76 9.61 -39.84 -0.38 -6.14 16
14 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16
15 N -0.32 -7.46 3.67 -62.57 -0.23 -7.69 16
16 C 0.26 6.57 6.26 -5.20 -0.03 6.54 16
17 C -0.53 -14.70 9.23 -34.44 -0.32 -15.02 16
18 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16
19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
20 N -0.90 -25.30 13.29 55.43 0.74 -24.56 16
21 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16
22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
25 N -0.31 -7.09 12.42 31.44 0.39 -6.70 16
26 C 0.07 0.60 6.63 -3.53 -0.02 0.57 16
27 C 0.05 0.37 6.99 37.31 0.26 0.63 16
28 O -0.36 -3.34 10.25 -35.23 -0.36 -3.71 16
29 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16
30 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16
31 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16
32 H 0.07 0.52 6.47 -51.93 -0.34 0.19 16
33 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16
34 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16
35 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16
36 H 0.05 0.34 8.12 -51.92 -0.42 -0.08 16
37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16
38 H 0.10 1.08 7.12 -51.93 -0.37 0.71 16
39 H 0.41 5.36 6.34 -40.82 -0.26 5.10 16
40 H 0.16 3.14 5.93 -52.49 -0.31 2.83 16
41 H 0.17 2.74 8.06 -52.49 -0.42 2.31 16
42 H 0.04 1.19 8.14 -51.92 -0.42 0.77 16
43 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16
44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16
45 H 0.09 0.66 5.66 -51.93 -0.29 0.36 16
46 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16
47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16
48 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16
LS Contribution 388.74 15.07 5.86 5.86
Total: -1.00 -33.70 388.74 -9.50 -43.20
By element:
Atomic # 1 Polarization: 11.10 SS G_CDS: -7.36 Total: 3.74 kcal
Atomic # 6 Polarization: 8.79 SS G_CDS: -1.73 Total: 7.06 kcal
Atomic # 7 Polarization: -61.38 SS G_CDS: -0.95 Total: -62.33 kcal
Atomic # 8 Polarization: -13.59 SS G_CDS: -0.29 Total: -13.88 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -33.70 -9.50 -43.20 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330636591.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.510 kcal
(2) G-P(sol) polarization free energy of solvation -33.703 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.807 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.306 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds