Wall clock time and date at job start Tue Mar 31 2020 21:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00390 * 2 1 4 4 C 1.46898 * 110.99782 * 123.95757 * 2 1 3 5 5 C 1.52999 * 109.47035 * 170.00063 * 4 2 1 6 6 H 1.08997 * 109.51680 * 60.09946 * 5 4 2 7 7 C 1.53716 * 109.48362 * 180.35900 * 5 4 2 8 8 N 1.47153 * 108.16279 * 172.39706 * 7 5 4 9 9 C 1.34776 * 120.98526 * 129.43213 * 8 7 5 10 10 O 1.21596 * 119.99645 * 4.70699 * 9 8 7 11 11 N 1.34776 * 120.00325 * 184.70703 * 9 8 7 12 12 C 1.40199 * 119.99962 * 175.01675 * 11 9 8 13 13 C 1.40399 * 125.97029 * 359.72416 * 12 11 9 14 14 C 1.35242 * 107.86371 * 180.02562 * 13 12 11 15 15 N 1.34970 * 107.86056 * 359.97438 * 14 13 12 16 16 C 1.46494 * 125.97445 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47468 * 125.00133 * 16 15 14 18 18 H 1.08007 * 119.99913 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00650 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99771 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00564 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46940 * 89.99696 * 21 19 17 23 23 H 1.48500 * 109.47204 * 209.99821 * 21 19 17 24 24 H 1.48502 * 109.46716 * 330.00056 * 21 19 17 25 25 N 1.31207 * 125.96708 * 179.41483 * 12 11 9 26 26 C 1.47156 * 118.03621 * 309.15825 * 8 7 5 27 27 C 1.53301 * 108.38224 * 50.78691 * 26 8 7 28 28 O 1.42963 * 109.51288 * 299.99438 * 5 4 2 29 29 H 1.09002 * 109.47092 * 296.04735 * 1 2 3 30 30 H 1.09000 * 109.46421 * 56.04612 * 1 2 3 31 31 H 1.09002 * 109.47297 * 176.04308 * 1 2 3 32 32 H 1.08995 * 109.47511 * 183.95395 * 3 2 1 33 33 H 1.09002 * 109.46807 * 303.95355 * 3 2 1 34 34 H 1.09001 * 109.46810 * 63.95400 * 3 2 1 35 35 H 1.08990 * 109.47721 * 49.99591 * 4 2 1 36 36 H 1.09008 * 109.47140 * 289.99378 * 4 2 1 37 37 H 1.08999 * 109.83677 * 52.71645 * 7 5 4 38 38 H 1.08999 * 109.74895 * 292.02291 * 7 5 4 39 39 H 0.97003 * 119.99491 * 354.73500 * 11 9 8 40 40 H 1.07997 * 126.06956 * 359.97438 * 13 12 11 41 41 H 1.07998 * 126.07113 * 180.02562 * 14 13 12 42 42 H 1.09008 * 109.46858 * 244.99939 * 16 15 14 43 43 H 1.08998 * 109.47671 * 4.99399 * 16 15 14 44 44 H 0.96995 * 119.99863 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.68139 * 170.50393 * 26 8 7 46 46 H 1.08999 * 109.68286 * 291.03074 * 26 8 7 47 47 H 1.08995 * 109.51102 * 67.62104 * 27 26 8 48 48 H 1.08995 * 109.51115 * 187.72720 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9554 0.9703 6 1 3.9918 0.0188 0.9340 7 6 4.0541 -1.7647 2.1560 8 7 5.4627 -2.0870 1.8777 9 6 6.4247 -1.8359 2.7875 10 8 6.1253 -1.4158 3.8887 11 7 7.7186 -2.0503 2.4769 12 6 8.7259 -1.6915 3.3837 13 6 8.5305 -1.0989 4.6414 14 6 9.7455 -0.9105 5.2045 15 7 10.6773 -1.3655 4.3405 16 6 12.1266 -1.3538 4.5531 17 6 12.6706 -2.7488 4.3830 18 1 12.0033 -3.5629 4.1412 19 6 14.0201 -2.9861 4.5361 20 7 14.8329 -1.9947 4.8301 21 14 14.6943 -4.7155 4.3259 22 1 15.0704 -4.9309 2.9055 23 1 15.8920 -4.8879 5.1867 24 1 13.6564 -5.7024 4.7184 25 7 10.0156 -1.8561 3.2075 26 6 5.7891 -2.6972 0.5790 27 6 5.1542 -1.8473 -0.5277 28 8 3.7650 -1.6653 -0.2430 29 1 -0.3633 0.4513 0.9233 30 1 -0.3632 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0828 1.3432 -0.0709 33 1 1.5899 1.9163 -0.8525 34 1 1.7045 1.8723 0.9233 35 1 1.5090 -1.7406 1.1756 36 1 1.7975 -0.2248 2.0628 37 1 3.4827 -2.6857 2.2717 38 1 3.9863 -1.1729 3.0688 39 1 7.9525 -2.4566 1.6278 40 1 7.5788 -0.8387 5.0807 41 1 9.9364 -0.4744 6.1739 42 1 12.5951 -0.6900 3.8263 43 1 12.3433 -0.9997 5.5609 44 1 15.7823 -2.1615 4.9374 45 1 6.8707 -2.7230 0.4470 46 1 5.3899 -3.7107 0.5389 47 1 5.6476 -0.8763 -0.5694 48 1 5.2667 -2.3544 -1.4859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330636591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:10 Heat of formation + Delta-G solvation = 16.952093 kcal Electronic energy + Delta-G solvation = -29123.804341 eV Core-core repulsion = 25023.066978 eV Total energy + Delta-G solvation = -4100.737364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.35055 -41.42727 -39.85916 -37.98759 -36.34238 -35.89162 -35.22989 -33.19619 -32.56697 -30.95243 -29.59617 -28.66665 -28.47443 -27.39940 -25.03320 -24.66377 -23.74046 -22.48890 -21.88401 -21.62759 -20.55639 -19.30028 -18.68886 -18.20328 -17.62870 -17.29137 -17.05062 -16.69916 -16.55446 -16.23566 -15.92415 -15.84100 -15.64172 -15.49564 -15.30002 -14.66884 -14.62791 -14.49639 -14.19225 -13.88151 -13.68278 -13.40023 -13.24011 -13.11678 -12.94273 -12.77083 -12.73690 -12.60984 -12.41209 -12.29533 -12.12850 -12.08024 -11.71210 -11.58036 -11.41035 -11.13948 -11.05909 -10.71947 -9.84223 -9.65302 -9.25514 -9.06107 -8.32683 -6.46725 0.97055 1.07616 1.38389 1.38950 1.50346 1.63457 1.94336 2.32697 2.34866 2.71733 2.72764 2.98138 2.98967 3.71913 3.83512 3.88647 3.92635 3.99860 4.14135 4.23448 4.25763 4.32996 4.37908 4.47304 4.55738 4.62183 4.69722 4.71506 4.77585 4.80437 4.82739 4.89512 4.93106 4.95157 5.01288 5.04208 5.07146 5.09074 5.36749 5.55334 5.62576 5.82669 5.92908 6.01186 6.10357 6.24305 6.28045 6.51885 6.66045 7.06816 7.23146 7.28095 8.74783 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.002005 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.627971 B =13963.828319 C =14433.756146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.022 3.978 4 C 0.065 3.935 5 C 0.089 3.911 6 H 0.054 0.946 7 C 0.104 3.896 8 N -0.622 5.622 9 C 0.716 3.284 10 O -0.596 6.596 11 N -0.637 5.637 12 C 0.283 3.717 13 C -0.293 4.293 14 C 0.058 3.942 15 N -0.344 5.344 16 C 0.272 3.728 17 C -0.547 4.547 18 H 0.052 0.948 19 C 0.018 3.982 20 N -0.920 5.920 21 Si 0.972 3.028 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.273 1.273 25 N -0.346 5.346 26 C 0.068 3.932 27 C 0.050 3.950 28 O -0.367 6.367 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.417 0.583 40 H 0.166 0.834 41 H 0.202 0.798 42 H 0.022 0.978 43 H 0.059 0.941 44 H 0.272 0.728 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.050 0.950 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.524 2.711 -10.529 29.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.127 4.127 4 C -0.063 4.063 5 C 0.030 3.970 6 H 0.072 0.928 7 C -0.020 4.020 8 N -0.360 5.360 9 C 0.417 3.583 10 O -0.474 6.474 11 N -0.290 5.290 12 C 0.028 3.972 13 C -0.324 4.324 14 C -0.090 4.090 15 N -0.126 5.126 16 C 0.154 3.846 17 C -0.585 4.585 18 H 0.070 0.930 19 C -0.182 4.182 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.198 1.198 25 N -0.177 5.177 26 C -0.054 4.054 27 C -0.028 4.028 28 O -0.285 6.285 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.257 0.743 40 H 0.183 0.817 41 H 0.219 0.781 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.068 0.932 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.537 2.365 -11.046 28.841 hybrid contribution 0.369 -0.068 1.016 1.083 sum -26.167 2.297 -10.030 28.117 Atomic orbital electron populations 1.22415 0.85957 1.02873 1.00986 1.61880 1.08860 1.14020 1.42935 1.22442 1.00568 0.88636 1.01006 1.22081 0.92018 0.99916 0.92296 1.22532 0.96317 0.94010 0.84150 0.92771 1.22342 0.78844 1.01462 0.99320 1.47261 1.06633 1.65470 1.16662 1.15621 0.79985 0.78594 0.84079 1.90829 1.81375 1.53120 1.22029 1.41539 1.02467 1.64645 1.20375 1.19073 0.87568 0.99023 0.91569 1.21656 0.98998 1.15418 0.96340 1.23152 0.88195 0.99708 0.97994 1.48828 1.07843 1.44503 1.11390 1.19347 0.69853 0.97858 0.97584 1.21397 0.93545 0.93815 1.49778 0.92975 1.25737 0.96551 1.01901 0.94018 1.69996 1.04882 1.33164 1.47830 0.85347 0.77817 0.78762 0.78475 1.19749 1.19710 1.19817 1.77240 1.03609 1.26469 1.10383 1.22693 1.02015 0.98786 0.81916 1.23065 0.81939 0.99282 0.98487 1.88067 1.23734 1.76354 1.40316 0.95181 0.90767 0.90794 0.92202 0.90614 0.95236 0.88891 0.92106 0.89093 0.88887 0.74281 0.81684 0.78140 0.95980 0.92299 0.91851 0.88615 0.88390 0.93161 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 127.69 1.22 1.48 16 2 N -0.55 -7.79 4.89 -948.85 -4.64 -12.42 16 3 C 0.02 0.28 9.32 127.69 1.19 1.47 16 4 C 0.07 0.85 4.66 86.30 0.40 1.25 16 5 C 0.09 1.41 2.66 30.83 0.08 1.50 16 6 H 0.05 0.98 6.56 -2.39 -0.02 0.96 16 7 C 0.10 1.84 5.94 86.50 0.51 2.35 16 8 N -0.62 -13.14 3.01 -834.50 -2.52 -15.65 16 9 C 0.72 21.31 8.28 179.05 1.48 22.80 16 10 O -0.60 -21.44 12.99 -4.02 -0.05 -21.49 16 11 N -0.64 -20.01 5.37 -321.23 -1.72 -21.74 16 12 C 0.28 11.50 8.11 133.31 1.08 12.58 16 13 C -0.29 -11.69 9.61 22.10 0.21 -11.47 16 14 C 0.06 2.31 11.44 83.52 0.96 3.27 16 15 N -0.34 -16.23 3.67 -351.86 -1.29 -17.52 16 16 C 0.27 14.15 6.26 85.63 0.54 14.69 16 17 C -0.55 -30.92 9.23 25.60 0.24 -30.68 16 18 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 19 C 0.02 1.01 5.46 84.65 0.46 1.47 16 20 N -0.92 -52.05 13.29 21.45 0.28 -51.77 16 21 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 N -0.35 -16.18 12.42 -54.43 -0.68 -16.86 16 26 C 0.07 0.99 6.63 86.36 0.57 1.56 16 27 C 0.05 0.66 6.99 72.08 0.50 1.16 16 28 O -0.37 -6.20 10.25 -148.98 -1.53 -7.73 16 29 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 31 H 0.07 0.68 8.12 -2.39 -0.02 0.67 16 32 H 0.06 0.87 6.47 -2.39 -0.02 0.86 16 33 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 34 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.09 1.09 8.06 -2.39 -0.02 1.07 16 36 H 0.06 0.70 8.12 -2.38 -0.02 0.68 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.89 7.12 -2.39 -0.02 1.87 16 39 H 0.42 10.68 6.34 -92.71 -0.59 10.09 16 40 H 0.17 6.43 5.93 -2.91 -0.02 6.41 16 41 H 0.20 6.30 8.06 -2.91 -0.02 6.27 16 42 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 44 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 45 H 0.10 1.24 5.66 -2.39 -0.01 1.23 16 46 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.09 388.74 -0.27 -72.36 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.39 Total: 23.78 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 9.45 Total: 23.43 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -10.56 Total: -135.96 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -1.58 Total: -29.22 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.09 -0.27 -72.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330636591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.316 kcal (2) G-P(sol) polarization free energy of solvation -72.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds