Wall clock time and date at job start Tue Mar 31 2020 21:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00234 * 2 1 4 4 C 1.34776 * 120.00156 * 180.02562 * 2 1 3 5 5 O 1.21288 * 120.00034 * 359.97438 * 4 2 1 6 6 C 1.50704 * 120.00384 * 179.97438 * 4 2 1 7 7 N 1.46498 * 109.47039 * 179.97438 * 6 4 2 8 8 N 1.40374 * 126.31414 * 270.01927 * 7 6 4 9 9 C 1.28671 * 108.11147 * 180.28554 * 8 7 6 10 10 N 1.38221 * 108.78321 * 0.69766 * 9 8 7 11 11 C 1.34036 * 108.40403 * 358.53455 * 10 9 8 12 12 O 1.21820 * 126.34984 * 181.62022 * 11 10 9 13 13 C 1.46781 * 123.22292 * 177.72155 * 10 9 8 14 14 C 1.53447 * 108.07044 * 18.46965 * 13 10 9 15 15 N 1.47070 * 109.49810 * 308.83222 * 14 13 10 16 16 C 1.46906 * 110.99768 * 196.04572 * 15 14 13 17 17 C 1.52997 * 109.46848 * 302.18764 * 16 15 14 18 18 C 1.53006 * 109.46931 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47012 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99776 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99847 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00322 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99870 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46877 * 90.00562 * 23 21 19 25 25 H 1.48506 * 109.46978 * 210.00139 * 23 21 19 26 26 H 1.48496 * 109.47067 * 330.00119 * 23 21 19 27 27 C 1.47395 * 110.92486 * 72.14614 * 15 14 13 28 28 H 1.09001 * 109.47155 * 269.99750 * 1 2 3 29 29 H 1.08998 * 109.47379 * 29.99653 * 1 2 3 30 30 H 1.08998 * 109.47372 * 150.00296 * 1 2 3 31 31 H 1.09001 * 109.46993 * 270.00601 * 3 2 1 32 32 H 1.09004 * 109.46976 * 29.99716 * 3 2 1 33 33 H 1.09002 * 109.47575 * 149.99986 * 3 2 1 34 34 H 1.09000 * 109.46695 * 59.99634 * 6 4 2 35 35 H 1.09003 * 109.46715 * 300.00154 * 6 4 2 36 36 H 1.08997 * 109.73969 * 138.11433 * 13 10 9 37 37 H 1.08995 * 109.74416 * 258.78289 * 13 10 9 38 38 H 1.08997 * 109.46393 * 188.82173 * 14 13 10 39 39 H 1.09006 * 109.46057 * 68.83955 * 14 13 10 40 40 H 1.08998 * 109.47121 * 62.18597 * 16 15 14 41 41 H 1.09000 * 109.47141 * 182.18796 * 16 15 14 42 42 H 1.08998 * 109.47584 * 300.00097 * 17 16 15 43 43 H 1.09005 * 109.46901 * 60.00396 * 17 16 15 44 44 H 1.08998 * 109.47207 * 299.99936 * 18 17 16 45 45 H 1.09000 * 109.46973 * 60.00084 * 18 17 16 46 46 H 0.96993 * 120.00508 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.77915 * 68.15856 * 27 15 14 48 48 H 1.09007 * 109.77578 * 188.90483 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1341 -2.5485 -0.0010 8 7 4.4113 -3.3321 1.1302 9 6 4.8244 -4.4826 0.7284 10 7 4.8478 -4.4892 -0.6536 11 6 4.4006 -3.3035 -1.0902 12 8 4.2602 -2.9683 -2.2529 13 6 5.3165 -5.6335 -1.4445 14 6 5.3005 -6.8743 -0.5420 15 7 6.0164 -6.5809 0.7088 16 6 6.3546 -7.8184 1.4245 17 6 5.0755 -8.6066 1.7129 18 6 5.4278 -9.8958 2.4578 19 6 4.1679 -10.6726 2.7413 20 1 3.2115 -10.2852 2.4225 21 6 4.2362 -11.8776 3.4076 22 7 5.4008 -12.3491 3.7963 23 14 2.6744 -12.8401 3.7597 24 1 2.3969 -13.7635 2.6304 25 1 2.8470 -13.6240 5.0091 26 1 1.5378 -11.8979 3.9195 27 6 5.2308 -5.6736 1.5645 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 2.3791 1.5834 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0095 -0.6535 0.8888 35 1 4.0088 -0.6532 -0.8911 36 1 4.6537 -5.7887 -2.2958 37 1 6.3309 -5.4468 -1.7969 38 1 5.7895 -7.7026 -1.0547 39 1 4.2693 -7.1454 -0.3154 40 1 7.0228 -8.4222 0.8105 41 1 6.8487 -7.5712 2.3641 42 1 4.4072 -8.0029 2.3269 43 1 4.5814 -8.8538 0.7732 44 1 6.0958 -10.4994 1.8434 45 1 5.9221 -9.6490 3.3973 46 1 5.4488 -13.1967 4.2654 47 1 4.3421 -6.1884 1.9297 48 1 5.8381 -5.3435 2.4074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330940180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:55 Heat of formation + Delta-G solvation = 27.753218 kcal Electronic energy + Delta-G solvation = -29399.074905 eV Core-core repulsion = 25298.805914 eV Total energy + Delta-G solvation = -4100.268992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.63773 -40.12897 -38.61382 -37.20252 -35.96777 -35.26163 -33.51537 -32.75423 -31.43509 -29.74881 -29.19678 -28.23017 -27.10707 -25.93570 -24.83577 -23.81014 -22.12727 -21.81282 -20.82918 -19.86385 -19.28366 -17.86596 -17.58644 -16.80958 -16.56321 -16.36845 -16.24119 -15.89986 -15.61738 -15.21462 -14.81055 -14.57644 -14.36180 -14.34761 -13.91135 -13.86343 -13.35906 -13.15430 -13.10442 -12.92142 -12.60664 -12.46841 -12.44611 -12.35813 -12.06999 -11.96352 -11.77047 -11.51832 -11.22272 -10.93763 -10.81153 -10.59833 -10.57464 -10.27303 -9.89743 -9.73520 -9.59569 -9.25231 -9.14504 -8.64139 -8.39570 -8.21841 -6.04492 -4.07300 1.51073 1.87256 2.22492 2.47315 2.75804 2.93028 3.29333 3.36057 3.39493 3.64758 4.04018 4.20871 4.40616 4.42745 4.51292 4.59428 4.70804 4.80141 4.85411 4.89656 5.05723 5.12588 5.18111 5.24726 5.31115 5.32583 5.42340 5.44800 5.51140 5.63410 5.65423 5.77760 5.84711 5.92790 6.00776 6.09490 6.36744 6.37389 6.57877 6.83581 6.85090 6.87231 7.10263 7.57133 7.59639 7.72124 7.74761 7.94016 7.98554 8.36523 8.99448 9.57473 11.06390 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.002269 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.472459 B =12336.526178 C =13402.700869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.074 3.926 4 C 0.495 3.505 5 O -0.517 6.517 6 C 0.150 3.850 7 N -0.446 5.446 8 N -0.275 5.275 9 C 0.299 3.701 10 N -0.550 5.550 11 C 0.660 3.340 12 O -0.560 6.560 13 C 0.139 3.861 14 C 0.032 3.968 15 N -0.537 5.537 16 C 0.054 3.946 17 C -0.150 4.150 18 C 0.026 3.974 19 C -0.522 4.522 20 H 0.053 0.947 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.890 3.110 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.126 3.874 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.261 0.739 47 H 0.088 0.912 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 27.215 -7.955 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.360 5.360 3 C -0.069 4.069 4 C 0.280 3.720 5 O -0.391 6.391 6 C 0.025 3.975 7 N -0.265 5.265 8 N -0.097 5.097 9 C 0.019 3.981 10 N -0.278 5.278 11 C 0.359 3.641 12 O -0.434 6.434 13 C 0.017 3.983 14 C -0.096 4.096 15 N -0.261 5.261 16 C -0.072 4.072 17 C -0.188 4.188 18 C -0.012 4.012 19 C -0.561 4.561 20 H 0.071 0.929 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.718 3.282 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.004 4.004 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.296 27.625 -8.066 28.808 hybrid contribution -1.595 -1.239 -0.155 2.025 sum -2.891 26.386 -8.220 27.788 Atomic orbital electron populations 1.21649 0.78713 1.03257 1.02030 1.47719 1.07370 1.06125 1.74764 1.21903 0.97352 0.85331 1.02359 1.21102 0.90550 0.83735 0.76579 1.90767 1.69726 1.30916 1.47729 1.21146 0.91108 0.78962 1.06324 1.48271 1.62368 1.12565 1.03330 1.76684 1.22212 1.01421 1.09374 1.24325 0.95565 0.95365 0.82824 1.46020 1.59135 1.15430 1.07235 1.16355 0.80990 0.81349 0.85371 1.91052 1.61526 1.75756 1.15109 1.21999 1.00865 0.81865 0.93564 1.22577 0.99286 0.96310 0.91438 1.62636 1.42095 1.16348 1.05030 1.22436 0.98615 0.87561 0.98607 1.22302 0.96258 0.99545 1.00729 1.19009 0.96883 0.90242 0.95078 1.21230 0.93402 1.04736 1.36694 0.92874 1.25013 0.95992 0.97626 0.95755 1.69949 1.23636 1.20215 1.39540 0.86619 0.83683 0.80097 0.77771 1.20667 1.21176 1.19913 1.21015 0.99153 0.86609 0.93643 0.92532 0.91051 0.90494 0.92017 0.90462 0.90758 0.85768 0.85914 0.88849 0.89279 0.87525 0.92437 0.89921 0.90126 0.93110 0.93003 0.96455 0.96424 0.92958 0.89463 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.44 59.84 0.62 1.25 16 2 N -0.62 -5.12 3.27 -189.52 -0.62 -5.74 16 3 C 0.07 0.26 10.24 59.85 0.61 0.88 16 4 C 0.49 5.98 7.74 -10.98 -0.09 5.89 16 5 O -0.52 -8.92 16.01 5.55 0.09 -8.83 16 6 C 0.15 1.52 5.42 -5.19 -0.03 1.49 16 7 N -0.45 -6.42 3.12 -66.45 -0.21 -6.62 16 8 N -0.27 -4.02 12.51 33.13 0.41 -3.61 16 9 C 0.30 4.18 7.85 -153.73 -1.21 2.97 16 10 N -0.55 -7.94 3.14 -117.47 -0.37 -8.31 16 11 C 0.66 10.74 8.67 -87.22 -0.76 9.98 16 12 O -0.56 -10.33 17.85 5.08 0.09 -10.23 16 13 C 0.14 1.62 7.17 -3.66 -0.03 1.59 16 14 C 0.03 0.38 4.55 -3.50 -0.02 0.36 16 15 N -0.54 -6.73 4.86 -234.96 -1.14 -7.87 16 16 C 0.05 0.77 5.30 -3.82 -0.02 0.75 16 17 C -0.15 -2.71 4.50 -26.73 -0.12 -2.83 16 18 C 0.03 0.61 4.97 -27.88 -0.14 0.48 16 19 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 20 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 23 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 27 C 0.13 1.57 5.66 -4.51 -0.03 1.54 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 30 H 0.08 0.74 7.42 -51.93 -0.39 0.35 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.15 8.07 -51.93 -0.42 -0.27 16 33 H 0.07 0.16 6.44 -51.93 -0.33 -0.18 16 34 H 0.12 0.83 7.40 -51.93 -0.38 0.45 16 35 H 0.12 0.98 8.09 -51.93 -0.42 0.56 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.11 1.10 7.98 -51.93 -0.41 0.69 16 39 H 0.06 0.74 7.15 -51.93 -0.37 0.37 16 40 H 0.08 1.16 8.12 -51.93 -0.42 0.73 16 41 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 42 H 0.05 0.92 6.47 -51.93 -0.34 0.58 16 43 H 0.05 0.93 6.74 -51.93 -0.35 0.58 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.09 1.15 6.32 -51.93 -0.33 0.82 16 48 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -37.80 391.44 -9.23 -47.03 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -7.51 Total: -3.85 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -1.60 Total: 11.24 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -1.19 Total: -57.67 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.18 Total: -19.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.80 -9.23 -47.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330940180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.782 kcal (2) G-P(sol) polarization free energy of solvation -37.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds