Wall clock time and date at job start Tue Mar 31 2020 21:27:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46493 * 1
3 3 C 1.46500 * 120.00234 * 2 1
4 4 C 1.34776 * 120.00156 * 180.02562 * 2 1 3
5 5 O 1.21288 * 120.00034 * 359.97438 * 4 2 1
6 6 C 1.50704 * 120.00384 * 179.97438 * 4 2 1
7 7 N 1.46498 * 109.47039 * 179.97438 * 6 4 2
8 8 N 1.40374 * 126.31414 * 270.01927 * 7 6 4
9 9 C 1.28671 * 108.11147 * 180.28554 * 8 7 6
10 10 N 1.38221 * 108.78321 * 0.69766 * 9 8 7
11 11 C 1.34036 * 108.40403 * 358.53455 * 10 9 8
12 12 O 1.21820 * 126.34984 * 181.62022 * 11 10 9
13 13 C 1.46781 * 123.22292 * 177.72155 * 10 9 8
14 14 C 1.53447 * 108.07044 * 18.46965 * 13 10 9
15 15 N 1.47070 * 109.49810 * 308.83222 * 14 13 10
16 16 C 1.46906 * 110.99768 * 196.04572 * 15 14 13
17 17 C 1.52997 * 109.46848 * 302.18764 * 16 15 14
18 18 C 1.53006 * 109.46931 * 179.97438 * 17 16 15
19 19 C 1.50706 * 109.47012 * 180.02562 * 18 17 16
20 20 H 1.08001 * 119.99776 * 359.97438 * 19 18 17
21 21 C 1.37871 * 119.99847 * 179.97438 * 19 18 17
22 22 N 1.31516 * 120.00322 * 0.02562 * 21 19 18
23 23 Si 1.86803 * 119.99870 * 179.97438 * 21 19 18
24 24 H 1.48493 * 109.46877 * 90.00562 * 23 21 19
25 25 H 1.48506 * 109.46978 * 210.00139 * 23 21 19
26 26 H 1.48496 * 109.47067 * 330.00119 * 23 21 19
27 27 C 1.47395 * 110.92486 * 72.14614 * 15 14 13
28 28 H 1.09001 * 109.47155 * 269.99750 * 1 2 3
29 29 H 1.08998 * 109.47379 * 29.99653 * 1 2 3
30 30 H 1.08998 * 109.47372 * 150.00296 * 1 2 3
31 31 H 1.09001 * 109.46993 * 270.00601 * 3 2 1
32 32 H 1.09004 * 109.46976 * 29.99716 * 3 2 1
33 33 H 1.09002 * 109.47575 * 149.99986 * 3 2 1
34 34 H 1.09000 * 109.46695 * 59.99634 * 6 4 2
35 35 H 1.09003 * 109.46715 * 300.00154 * 6 4 2
36 36 H 1.08997 * 109.73969 * 138.11433 * 13 10 9
37 37 H 1.08995 * 109.74416 * 258.78289 * 13 10 9
38 38 H 1.08997 * 109.46393 * 188.82173 * 14 13 10
39 39 H 1.09006 * 109.46057 * 68.83955 * 14 13 10
40 40 H 1.08998 * 109.47121 * 62.18597 * 16 15 14
41 41 H 1.09000 * 109.47141 * 182.18796 * 16 15 14
42 42 H 1.08998 * 109.47584 * 300.00097 * 17 16 15
43 43 H 1.09005 * 109.46901 * 60.00396 * 17 16 15
44 44 H 1.08998 * 109.47207 * 299.99936 * 18 17 16
45 45 H 1.09000 * 109.46973 * 60.00084 * 18 17 16
46 46 H 0.96993 * 120.00508 * 179.97438 * 22 21 19
47 47 H 1.08999 * 109.77915 * 68.15856 * 27 15 14
48 48 H 1.09007 * 109.77578 * 188.90483 * 27 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1388 -1.1672 -0.0005
5 8 1.5324 -2.2176 -0.0005
6 6 3.6459 -1.1672 -0.0011
7 7 4.1341 -2.5485 -0.0010
8 7 4.4113 -3.3321 1.1302
9 6 4.8244 -4.4826 0.7284
10 7 4.8478 -4.4892 -0.6536
11 6 4.4006 -3.3035 -1.0902
12 8 4.2602 -2.9683 -2.2529
13 6 5.3165 -5.6335 -1.4445
14 6 5.3005 -6.8743 -0.5420
15 7 6.0164 -6.5809 0.7088
16 6 6.3546 -7.8184 1.4245
17 6 5.0755 -8.6066 1.7129
18 6 5.4278 -9.8958 2.4578
19 6 4.1679 -10.6726 2.7413
20 1 3.2115 -10.2852 2.4225
21 6 4.2362 -11.8776 3.4076
22 7 5.4008 -12.3491 3.7963
23 14 2.6744 -12.8401 3.7597
24 1 2.3969 -13.7635 2.6304
25 1 2.8470 -13.6240 5.0091
26 1 1.5378 -11.8979 3.9195
27 6 5.2308 -5.6736 1.5645
28 1 -0.3633 0.0000 1.0277
29 1 -0.3634 0.8900 -0.5138
30 1 -0.3634 -0.8900 -0.5138
31 1 2.3791 1.5834 -1.0277
32 1 1.6084 2.0284 0.5138
33 1 3.1499 1.1384 0.5138
34 1 4.0095 -0.6535 0.8888
35 1 4.0088 -0.6532 -0.8911
36 1 4.6537 -5.7887 -2.2958
37 1 6.3309 -5.4468 -1.7969
38 1 5.7895 -7.7026 -1.0547
39 1 4.2693 -7.1454 -0.3154
40 1 7.0228 -8.4222 0.8105
41 1 6.8487 -7.5712 2.3641
42 1 4.4072 -8.0029 2.3269
43 1 4.5814 -8.8538 0.7732
44 1 6.0958 -10.4994 1.8434
45 1 5.9221 -9.6490 3.3973
46 1 5.4488 -13.1967 4.2654
47 1 4.3421 -6.1884 1.9297
48 1 5.8381 -5.3435 2.4074
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000330940180.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:27:55
Heat of formation + Delta-G solvation = 27.753218 kcal
Electronic energy + Delta-G solvation = -29399.074905 eV
Core-core repulsion = 25298.805914 eV
Total energy + Delta-G solvation = -4100.268992 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.190 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.63773 -40.12897 -38.61382 -37.20252 -35.96777 -35.26163 -33.51537 -32.75423
-31.43509 -29.74881 -29.19678 -28.23017 -27.10707 -25.93570 -24.83577 -23.81014
-22.12727 -21.81282 -20.82918 -19.86385 -19.28366 -17.86596 -17.58644 -16.80958
-16.56321 -16.36845 -16.24119 -15.89986 -15.61738 -15.21462 -14.81055 -14.57644
-14.36180 -14.34761 -13.91135 -13.86343 -13.35906 -13.15430 -13.10442 -12.92142
-12.60664 -12.46841 -12.44611 -12.35813 -12.06999 -11.96352 -11.77047 -11.51832
-11.22272 -10.93763 -10.81153 -10.59833 -10.57464 -10.27303 -9.89743 -9.73520
-9.59569 -9.25231 -9.14504 -8.64139 -8.39570 -8.21841 -6.04492 -4.07300
1.51073 1.87256 2.22492 2.47315 2.75804 2.93028 3.29333 3.36057
3.39493 3.64758 4.04018 4.20871 4.40616 4.42745 4.51292 4.59428
4.70804 4.80141 4.85411 4.89656 5.05723 5.12588 5.18111 5.24726
5.31115 5.32583 5.42340 5.44800 5.51140 5.63410 5.65423 5.77760
5.84711 5.92790 6.00776 6.09490 6.36744 6.37389 6.57877 6.83581
6.85090 6.87231 7.10263 7.57133 7.59639 7.72124 7.74761 7.94016
7.98554 8.36523 8.99448 9.57473 11.06390
Molecular weight = 337.19amu
Principal moments of inertia in cm(-1)
A = 0.015591 B = 0.002269 C = 0.002089
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1795.472459 B =12336.526178 C =13402.700869
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.624 5.624
3 C 0.074 3.926
4 C 0.495 3.505
5 O -0.517 6.517
6 C 0.150 3.850
7 N -0.446 5.446
8 N -0.275 5.275
9 C 0.299 3.701
10 N -0.550 5.550
11 C 0.660 3.340
12 O -0.560 6.560
13 C 0.139 3.861
14 C 0.032 3.968
15 N -0.537 5.537
16 C 0.054 3.946
17 C -0.150 4.150
18 C 0.026 3.974
19 C -0.522 4.522
20 H 0.053 0.947
21 C 0.057 3.943
22 N -0.894 5.894
23 Si 0.890 3.110
24 H -0.281 1.281
25 H -0.286 1.286
26 H -0.274 1.274
27 C 0.126 3.874
28 H 0.056 0.944
29 H 0.071 0.929
30 H 0.076 0.924
31 H 0.061 0.939
32 H 0.077 0.923
33 H 0.074 0.926
34 H 0.125 0.875
35 H 0.123 0.877
36 H 0.093 0.907
37 H 0.089 0.911
38 H 0.107 0.893
39 H 0.057 0.943
40 H 0.082 0.918
41 H 0.080 0.920
42 H 0.050 0.950
43 H 0.051 0.949
44 H 0.017 0.983
45 H 0.017 0.983
46 H 0.261 0.739
47 H 0.088 0.912
48 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.168 27.215 -7.955 28.378
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 N -0.360 5.360
3 C -0.069 4.069
4 C 0.280 3.720
5 O -0.391 6.391
6 C 0.025 3.975
7 N -0.265 5.265
8 N -0.097 5.097
9 C 0.019 3.981
10 N -0.278 5.278
11 C 0.359 3.641
12 O -0.434 6.434
13 C 0.017 3.983
14 C -0.096 4.096
15 N -0.261 5.261
16 C -0.072 4.072
17 C -0.188 4.188
18 C -0.012 4.012
19 C -0.561 4.561
20 H 0.071 0.929
21 C -0.144 4.144
22 N -0.533 5.533
23 Si 0.718 3.282
24 H -0.207 1.207
25 H -0.212 1.212
26 H -0.199 1.199
27 C -0.004 4.004
28 H 0.075 0.925
29 H 0.089 0.911
30 H 0.095 0.905
31 H 0.080 0.920
32 H 0.095 0.905
33 H 0.092 0.908
34 H 0.142 0.858
35 H 0.141 0.859
36 H 0.112 0.888
37 H 0.107 0.893
38 H 0.125 0.875
39 H 0.076 0.924
40 H 0.101 0.899
41 H 0.099 0.901
42 H 0.069 0.931
43 H 0.070 0.930
44 H 0.035 0.965
45 H 0.036 0.964
46 H 0.070 0.930
47 H 0.105 0.895
48 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -1.296 27.625 -8.066 28.808
hybrid contribution -1.595 -1.239 -0.155 2.025
sum -2.891 26.386 -8.220 27.788
Atomic orbital electron populations
1.21649 0.78713 1.03257 1.02030 1.47719 1.07370 1.06125 1.74764
1.21903 0.97352 0.85331 1.02359 1.21102 0.90550 0.83735 0.76579
1.90767 1.69726 1.30916 1.47729 1.21146 0.91108 0.78962 1.06324
1.48271 1.62368 1.12565 1.03330 1.76684 1.22212 1.01421 1.09374
1.24325 0.95565 0.95365 0.82824 1.46020 1.59135 1.15430 1.07235
1.16355 0.80990 0.81349 0.85371 1.91052 1.61526 1.75756 1.15109
1.21999 1.00865 0.81865 0.93564 1.22577 0.99286 0.96310 0.91438
1.62636 1.42095 1.16348 1.05030 1.22436 0.98615 0.87561 0.98607
1.22302 0.96258 0.99545 1.00729 1.19009 0.96883 0.90242 0.95078
1.21230 0.93402 1.04736 1.36694 0.92874 1.25013 0.95992 0.97626
0.95755 1.69949 1.23636 1.20215 1.39540 0.86619 0.83683 0.80097
0.77771 1.20667 1.21176 1.19913 1.21015 0.99153 0.86609 0.93643
0.92532 0.91051 0.90494 0.92017 0.90462 0.90758 0.85768 0.85914
0.88849 0.89279 0.87525 0.92437 0.89921 0.90126 0.93110 0.93003
0.96455 0.96424 0.92958 0.89463 0.86319
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.63 10.44 59.84 0.62 1.25 16
2 N -0.62 -5.12 3.27 -189.52 -0.62 -5.74 16
3 C 0.07 0.26 10.24 59.85 0.61 0.88 16
4 C 0.49 5.98 7.74 -10.98 -0.09 5.89 16
5 O -0.52 -8.92 16.01 5.55 0.09 -8.83 16
6 C 0.15 1.52 5.42 -5.19 -0.03 1.49 16
7 N -0.45 -6.42 3.12 -66.45 -0.21 -6.62 16
8 N -0.27 -4.02 12.51 33.13 0.41 -3.61 16
9 C 0.30 4.18 7.85 -153.73 -1.21 2.97 16
10 N -0.55 -7.94 3.14 -117.47 -0.37 -8.31 16
11 C 0.66 10.74 8.67 -87.22 -0.76 9.98 16
12 O -0.56 -10.33 17.85 5.08 0.09 -10.23 16
13 C 0.14 1.62 7.17 -3.66 -0.03 1.59 16
14 C 0.03 0.38 4.55 -3.50 -0.02 0.36 16
15 N -0.54 -6.73 4.86 -234.96 -1.14 -7.87 16
16 C 0.05 0.77 5.30 -3.82 -0.02 0.75 16
17 C -0.15 -2.71 4.50 -26.73 -0.12 -2.83 16
18 C 0.03 0.61 4.97 -27.88 -0.14 0.48 16
19 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16
20 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16
21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
22 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16
23 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16
24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
26 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16
27 C 0.13 1.57 5.66 -4.51 -0.03 1.54 16
28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
29 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16
30 H 0.08 0.74 7.42 -51.93 -0.39 0.35 16
31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16
32 H 0.08 0.15 8.07 -51.93 -0.42 -0.27 16
33 H 0.07 0.16 6.44 -51.93 -0.33 -0.18 16
34 H 0.12 0.83 7.40 -51.93 -0.38 0.45 16
35 H 0.12 0.98 8.09 -51.93 -0.42 0.56 16
36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16
38 H 0.11 1.10 7.98 -51.93 -0.41 0.69 16
39 H 0.06 0.74 7.15 -51.93 -0.37 0.37 16
40 H 0.08 1.16 8.12 -51.93 -0.42 0.73 16
41 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16
42 H 0.05 0.92 6.47 -51.93 -0.34 0.58 16
43 H 0.05 0.93 6.74 -51.93 -0.35 0.58 16
44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
46 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
47 H 0.09 1.15 6.32 -51.93 -0.33 0.82 16
48 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16
LS Contribution 391.44 15.07 5.90 5.90
Total: -1.00 -37.80 391.44 -9.23 -47.03
By element:
Atomic # 1 Polarization: 3.66 SS G_CDS: -7.51 Total: -3.85 kcal
Atomic # 6 Polarization: 12.84 SS G_CDS: -1.60 Total: 11.24 kcal
Atomic # 7 Polarization: -56.48 SS G_CDS: -1.19 Total: -57.67 kcal
Atomic # 8 Polarization: -19.25 SS G_CDS: 0.18 Total: -19.07 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -37.80 -9.23 -47.03 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330940180.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.782 kcal
(2) G-P(sol) polarization free energy of solvation -37.796 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.753 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds