Wall clock time and date at job start Tue Mar 31 2020 21:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00234 * 2 1 4 4 C 1.34776 * 120.00156 * 180.02562 * 2 1 3 5 5 O 1.21288 * 120.00034 * 359.97438 * 4 2 1 6 6 C 1.50704 * 120.00384 * 179.97438 * 4 2 1 7 7 N 1.46498 * 109.47039 * 179.97438 * 6 4 2 8 8 N 1.40374 * 126.31414 * 270.01927 * 7 6 4 9 9 C 1.28671 * 108.11147 * 180.28554 * 8 7 6 10 10 N 1.38221 * 108.78321 * 0.69766 * 9 8 7 11 11 C 1.34036 * 108.40403 * 358.53455 * 10 9 8 12 12 O 1.21820 * 126.34984 * 181.62022 * 11 10 9 13 13 C 1.46781 * 123.22292 * 177.72155 * 10 9 8 14 14 C 1.53447 * 108.07044 * 18.46965 * 13 10 9 15 15 N 1.47070 * 109.49810 * 308.83222 * 14 13 10 16 16 C 1.46906 * 110.99768 * 196.04572 * 15 14 13 17 17 C 1.52997 * 109.46848 * 302.18764 * 16 15 14 18 18 C 1.53006 * 109.46931 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47012 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99776 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99847 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00322 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99870 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46877 * 90.00562 * 23 21 19 25 25 H 1.48506 * 109.46978 * 210.00139 * 23 21 19 26 26 H 1.48496 * 109.47067 * 330.00119 * 23 21 19 27 27 C 1.47395 * 110.92486 * 72.14614 * 15 14 13 28 28 H 1.09001 * 109.47155 * 269.99750 * 1 2 3 29 29 H 1.08998 * 109.47379 * 29.99653 * 1 2 3 30 30 H 1.08998 * 109.47372 * 150.00296 * 1 2 3 31 31 H 1.09001 * 109.46993 * 270.00601 * 3 2 1 32 32 H 1.09004 * 109.46976 * 29.99716 * 3 2 1 33 33 H 1.09002 * 109.47575 * 149.99986 * 3 2 1 34 34 H 1.09000 * 109.46695 * 59.99634 * 6 4 2 35 35 H 1.09003 * 109.46715 * 300.00154 * 6 4 2 36 36 H 1.08997 * 109.73969 * 138.11433 * 13 10 9 37 37 H 1.08995 * 109.74416 * 258.78289 * 13 10 9 38 38 H 1.08997 * 109.46393 * 188.82173 * 14 13 10 39 39 H 1.09006 * 109.46057 * 68.83955 * 14 13 10 40 40 H 1.08998 * 109.47121 * 62.18597 * 16 15 14 41 41 H 1.09000 * 109.47141 * 182.18796 * 16 15 14 42 42 H 1.08998 * 109.47584 * 300.00097 * 17 16 15 43 43 H 1.09005 * 109.46901 * 60.00396 * 17 16 15 44 44 H 1.08998 * 109.47207 * 299.99936 * 18 17 16 45 45 H 1.09000 * 109.46973 * 60.00084 * 18 17 16 46 46 H 0.96993 * 120.00508 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.77915 * 68.15856 * 27 15 14 48 48 H 1.09007 * 109.77578 * 188.90483 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1341 -2.5485 -0.0010 8 7 4.4113 -3.3321 1.1302 9 6 4.8244 -4.4826 0.7284 10 7 4.8478 -4.4892 -0.6536 11 6 4.4006 -3.3035 -1.0902 12 8 4.2602 -2.9683 -2.2529 13 6 5.3165 -5.6335 -1.4445 14 6 5.3005 -6.8743 -0.5420 15 7 6.0164 -6.5809 0.7088 16 6 6.3546 -7.8184 1.4245 17 6 5.0755 -8.6066 1.7129 18 6 5.4278 -9.8958 2.4578 19 6 4.1679 -10.6726 2.7413 20 1 3.2115 -10.2852 2.4225 21 6 4.2362 -11.8776 3.4076 22 7 5.4008 -12.3491 3.7963 23 14 2.6744 -12.8401 3.7597 24 1 2.3969 -13.7635 2.6304 25 1 2.8470 -13.6240 5.0091 26 1 1.5378 -11.8979 3.9195 27 6 5.2308 -5.6736 1.5645 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 2.3791 1.5834 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0095 -0.6535 0.8888 35 1 4.0088 -0.6532 -0.8911 36 1 4.6537 -5.7887 -2.2958 37 1 6.3309 -5.4468 -1.7969 38 1 5.7895 -7.7026 -1.0547 39 1 4.2693 -7.1454 -0.3154 40 1 7.0228 -8.4222 0.8105 41 1 6.8487 -7.5712 2.3641 42 1 4.4072 -8.0029 2.3269 43 1 4.5814 -8.8538 0.7732 44 1 6.0958 -10.4994 1.8434 45 1 5.9221 -9.6490 3.3973 46 1 5.4488 -13.1967 4.2654 47 1 4.3421 -6.1884 1.9297 48 1 5.8381 -5.3435 2.4074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330940180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:53 Heat of formation + Delta-G solvation = 0.821140 kcal Electronic energy + Delta-G solvation = -29400.242768 eV Core-core repulsion = 25298.805914 eV Total energy + Delta-G solvation = -4101.436854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.73276 -40.98138 -39.71867 -38.42118 -36.74950 -36.44769 -35.30280 -33.76529 -33.10165 -30.67249 -30.36963 -29.02444 -28.13947 -27.04581 -25.98588 -24.94628 -23.59946 -22.89837 -22.26324 -20.67126 -20.43797 -18.79312 -18.55545 -18.43939 -17.80202 -17.35200 -17.16102 -16.96043 -16.72081 -16.46670 -16.14387 -15.83095 -15.63548 -15.54146 -14.78518 -14.64580 -14.52449 -14.27624 -14.16810 -13.62033 -13.61226 -13.49675 -13.47634 -13.29814 -13.15415 -13.07290 -12.92988 -12.87832 -12.61624 -12.55771 -12.39698 -12.34774 -11.63878 -11.46400 -11.39928 -11.32373 -11.26772 -10.82749 -10.52374 -9.80595 -9.79160 -9.37074 -8.18355 -6.28311 0.52854 0.79704 1.36817 1.39419 1.40024 1.42978 1.50557 1.81144 2.04275 2.40770 2.59536 3.14685 3.24918 3.35405 3.43078 3.65998 3.94812 4.00215 4.10887 4.22038 4.26480 4.29387 4.31649 4.35710 4.42161 4.45146 4.54668 4.62233 4.68868 4.73889 4.75085 4.81458 4.84716 4.89958 4.96335 4.97478 5.18091 5.29974 5.34782 5.41607 5.54595 5.70646 5.85603 5.87256 5.90188 6.15506 6.28578 6.45999 6.80384 6.89278 6.95799 7.40619 8.92153 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.002269 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.472459 B =12336.526178 C =13402.700869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.616 5.616 3 C 0.063 3.937 4 C 0.485 3.515 5 O -0.584 6.584 6 C 0.142 3.858 7 N -0.445 5.445 8 N -0.284 5.284 9 C 0.295 3.705 10 N -0.552 5.552 11 C 0.645 3.355 12 O -0.591 6.591 13 C 0.137 3.863 14 C 0.034 3.966 15 N -0.528 5.528 16 C 0.069 3.931 17 C -0.135 4.135 18 C 0.028 3.972 19 C -0.542 4.542 20 H 0.052 0.948 21 C 0.003 3.997 22 N -0.928 5.928 23 Si 0.955 3.045 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.269 1.269 27 C 0.128 3.872 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.145 0.855 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.052 0.948 44 H -0.002 1.002 45 H -0.002 1.002 46 H 0.263 0.737 47 H 0.081 0.919 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 29.096 -7.946 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.350 5.350 3 C -0.078 4.078 4 C 0.272 3.728 5 O -0.464 6.464 6 C 0.018 3.982 7 N -0.264 5.264 8 N -0.107 5.107 9 C 0.016 3.984 10 N -0.280 5.280 11 C 0.344 3.656 12 O -0.469 6.469 13 C 0.016 3.984 14 C -0.094 4.094 15 N -0.251 5.251 16 C -0.058 4.058 17 C -0.174 4.174 18 C -0.010 4.010 19 C -0.580 4.580 20 H 0.071 0.929 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.781 3.219 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.193 1.193 27 C -0.002 4.002 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.143 0.857 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.218 29.580 -8.045 30.679 hybrid contribution -1.655 -1.713 -0.153 2.387 sum -2.872 27.867 -8.199 29.190 Atomic orbital electron populations 1.21753 0.78461 1.03408 1.02426 1.47899 1.07910 1.06697 1.72480 1.22277 0.98153 0.83460 1.03908 1.21504 0.91374 0.83887 0.75995 1.90733 1.70970 1.33358 1.51331 1.21621 0.89952 0.77521 1.09085 1.48612 1.61577 1.13584 1.02595 1.76645 1.22444 1.01909 1.09668 1.24569 0.95450 0.95656 0.82772 1.46237 1.58578 1.15526 1.07633 1.16616 0.81402 0.82060 0.85485 1.91009 1.63078 1.76527 1.16258 1.22174 1.01817 0.80972 0.93411 1.22627 0.98624 0.96940 0.91230 1.62653 1.42279 1.15192 1.04991 1.22231 0.96485 0.87702 0.99374 1.22104 0.98345 0.97178 0.99775 1.18914 0.95122 0.92451 0.94481 1.21705 0.94580 1.05310 1.36388 0.92943 1.25865 0.99112 0.98846 0.95729 1.70061 1.25663 1.20752 1.40403 0.85596 0.79892 0.78696 0.77762 1.19940 1.20716 1.19308 1.21107 0.99181 0.86017 0.93893 0.92040 0.87654 0.93510 0.90684 0.88234 0.88917 0.82118 0.83760 0.88425 0.87647 0.85733 0.93769 0.89204 0.89451 0.93196 0.92933 0.98384 0.98406 0.92824 0.90170 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.44 127.77 1.33 2.47 16 2 N -0.62 -9.25 3.27 -871.89 -2.85 -12.10 16 3 C 0.06 0.25 10.24 127.77 1.31 1.56 16 4 C 0.49 11.59 7.74 87.66 0.68 12.27 16 5 O -0.58 -20.97 16.01 -3.05 -0.05 -21.02 16 6 C 0.14 2.67 5.42 85.63 0.46 3.13 16 7 N -0.44 -12.53 3.12 -482.08 -1.51 -14.04 16 8 N -0.28 -8.10 12.51 -49.10 -0.61 -8.72 16 9 C 0.29 8.01 7.85 137.73 1.08 9.09 16 10 N -0.55 -15.64 3.14 -644.15 -2.02 -17.66 16 11 C 0.64 20.92 8.67 179.16 1.55 22.47 16 12 O -0.59 -21.97 17.85 -4.73 -0.08 -22.05 16 13 C 0.14 3.04 7.17 86.48 0.62 3.67 16 14 C 0.03 0.75 4.55 86.42 0.39 1.14 16 15 N -0.53 -12.31 4.86 -897.28 -4.36 -16.67 16 16 C 0.07 1.86 5.30 86.30 0.46 2.31 16 17 C -0.14 -4.81 4.50 30.60 0.14 -4.68 16 18 C 0.03 1.37 4.97 29.85 0.15 1.51 16 19 C -0.54 -29.91 9.11 25.60 0.23 -29.67 16 20 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 21 C 0.00 0.14 5.46 84.65 0.46 0.61 16 22 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 23 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 C 0.13 3.02 5.66 85.59 0.48 3.50 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.71 8.07 -2.39 -0.02 0.69 16 30 H 0.05 0.95 7.42 -2.39 -0.02 0.93 16 31 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.10 0.02 8.07 -2.39 -0.02 0.00 16 33 H 0.09 0.06 6.44 -2.39 -0.02 0.04 16 34 H 0.16 1.71 7.40 -2.39 -0.02 1.69 16 35 H 0.14 2.03 8.09 -2.39 -0.02 2.01 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.12 2.32 7.98 -2.39 -0.02 2.30 16 39 H 0.04 1.11 7.15 -2.38 -0.02 1.09 16 40 H 0.09 2.34 8.12 -2.39 -0.02 2.32 16 41 H 0.09 2.28 8.12 -2.39 -0.02 2.26 16 42 H 0.05 1.78 6.47 -2.39 -0.02 1.77 16 43 H 0.05 1.86 6.74 -2.38 -0.02 1.84 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 47 H 0.08 2.05 6.32 -2.39 -0.02 2.04 16 48 H 0.14 2.71 8.14 -2.38 -0.02 2.69 16 Total: -1.00 -84.45 391.44 1.14 -83.32 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.96 Total: 8.32 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 9.36 Total: 29.39 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -11.07 Total: -123.98 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -0.13 Total: -43.07 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -84.45 1.14 -83.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330940180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.137 kcal (2) G-P(sol) polarization free energy of solvation -84.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds