Wall clock time and date at job start Tue Mar 31 2020 21:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99903 * 2 1 4 4 C 1.38839 * 120.00122 * 180.02562 * 2 1 3 5 5 N 1.30635 * 126.38688 * 180.02562 * 4 2 1 6 6 O 1.21290 * 110.12182 * 179.72651 * 5 4 2 7 7 C 1.33649 * 109.98358 * 0.40291 * 6 5 4 8 8 C 1.50699 * 126.46042 * 179.86556 * 7 6 5 9 9 H 1.09004 * 109.49635 * 179.68523 * 8 7 6 10 10 C 1.53039 * 109.52550 * 299.76711 * 8 7 6 11 11 C 1.53040 * 109.53678 * 181.33410 * 10 8 7 12 12 C 1.53189 * 109.31525 * 298.63424 * 11 10 8 13 13 N 1.46928 * 108.77407 * 54.63621 * 12 11 10 14 14 C 1.34782 * 120.63003 * 126.41387 * 13 12 11 15 15 O 1.21584 * 119.99877 * 174.93407 * 14 13 12 16 16 N 1.34770 * 120.00025 * 354.94309 * 14 13 12 17 17 C 1.46506 * 120.00206 * 185.07399 * 16 14 13 18 18 C 1.52996 * 109.47080 * 179.97438 * 17 16 14 19 19 C 1.50705 * 109.46664 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99759 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99810 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00403 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47336 * 90.00256 * 23 21 19 25 25 H 1.48501 * 109.47291 * 210.00325 * 23 21 19 26 26 H 1.48503 * 109.46944 * 330.00299 * 23 21 19 27 27 C 1.46926 * 118.73985 * 306.39286 * 13 12 11 28 28 N 1.31042 * 107.07614 * 359.60166 * 7 6 5 29 29 H 1.09001 * 109.46944 * 269.99965 * 1 2 3 30 30 H 1.09000 * 109.47257 * 29.99682 * 1 2 3 31 31 H 1.08993 * 109.47459 * 150.00163 * 1 2 3 32 32 H 1.08998 * 109.47126 * 270.00115 * 3 2 1 33 33 H 1.08995 * 109.47288 * 30.00551 * 3 2 1 34 34 H 1.09008 * 109.47237 * 149.99958 * 3 2 1 35 35 H 1.08998 * 109.46172 * 301.35184 * 10 8 7 36 36 H 1.08993 * 109.45932 * 61.31377 * 10 8 7 37 37 H 1.08998 * 109.49836 * 178.68192 * 11 10 8 38 38 H 1.09006 * 109.49916 * 58.58978 * 11 10 8 39 39 H 1.09005 * 109.58992 * 294.84801 * 12 11 10 40 40 H 1.09003 * 109.70308 * 174.49340 * 12 11 10 41 41 H 0.97005 * 120.00156 * 5.06415 * 16 14 13 42 42 H 1.09004 * 109.46512 * 299.99546 * 17 16 14 43 43 H 1.09002 * 109.46527 * 59.99155 * 17 16 14 44 44 H 1.08999 * 109.47315 * 299.99840 * 18 17 16 45 45 H 1.08995 * 109.47326 * 59.99904 * 18 17 16 46 46 H 0.96996 * 120.00576 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.58612 * 293.82262 * 27 13 12 48 48 H 1.08996 * 109.58843 * 173.39432 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1592 -1.2024 -0.0005 5 7 3.4574 -1.3477 -0.0001 6 8 3.7454 -2.5259 0.0046 7 6 2.6338 -3.2678 -0.0010 8 6 2.5618 -4.7731 -0.0007 9 1 1.5180 -5.0873 -0.0006 10 6 3.2594 -5.3188 -1.2488 11 6 3.1574 -6.8457 -1.2657 12 6 3.8624 -7.4143 -0.0303 13 7 3.2945 -6.7849 1.1698 14 6 2.8148 -7.5387 2.1789 15 8 2.4324 -7.0093 3.2045 16 7 2.7592 -8.8792 2.0512 17 6 2.1363 -9.6898 3.1005 18 6 2.2042 -11.1678 2.7111 19 6 1.5640 -12.0017 3.7909 20 1 1.1498 -11.5250 4.6670 21 6 1.5063 -13.3730 3.6598 22 7 2.0103 -13.9534 2.5927 23 14 0.7121 -14.4066 4.9978 24 1 -0.7351 -14.5667 4.7063 25 1 1.3591 -15.7425 5.0410 26 1 0.8811 -13.7322 6.3101 27 6 3.2600 -5.3182 1.2492 28 7 1.6184 -2.4395 -0.0011 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 2.3791 1.5834 -1.0276 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1384 0.5139 35 1 2.7798 -4.9130 -2.1396 36 1 4.3089 -5.0250 -1.2359 37 1 3.6340 -7.2322 -2.1666 38 1 2.1080 -7.1405 -1.2537 39 1 4.9293 -7.1979 -0.0863 40 1 3.7103 -8.4927 0.0159 41 1 3.1314 -9.3073 1.2643 42 1 2.6663 -9.5367 4.0406 43 1 1.0941 -9.3929 3.2184 44 1 1.6740 -11.3207 1.7711 45 1 3.2463 -11.4649 2.5929 46 1 1.9700 -14.9182 2.5006 47 1 4.2777 -4.9308 1.2974 48 1 2.7082 -5.0132 2.1383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338659262.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:55 Heat of formation + Delta-G solvation = 53.555588 kcal Electronic energy + Delta-G solvation = -28929.236830 eV Core-core repulsion = 24830.086713 eV Total energy + Delta-G solvation = -4099.150117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.53802 -40.31096 -37.91752 -37.78927 -35.20148 -34.92072 -33.71680 -32.73001 -32.21115 -30.74006 -29.41654 -28.57444 -26.17696 -25.78658 -24.94296 -24.05863 -23.12667 -22.04088 -21.11200 -20.53665 -19.40977 -18.22051 -18.17628 -17.73071 -16.48374 -16.36244 -16.03240 -15.70014 -15.35428 -15.33838 -14.96385 -14.64865 -14.54309 -14.41432 -13.91035 -13.74282 -13.38476 -13.09728 -13.05107 -12.86781 -12.72667 -12.50414 -12.49218 -12.27417 -12.13298 -11.76065 -11.37552 -11.34411 -11.16836 -11.10191 -11.04259 -11.02362 -10.62570 -10.47278 -10.32445 -9.92164 -9.55140 -9.26335 -8.81765 -8.47170 -8.40312 -8.23043 -6.08939 -4.11383 1.01306 2.14107 2.24627 2.53739 2.89904 3.30195 3.36423 3.40968 3.46307 3.61863 4.15607 4.28894 4.37204 4.41815 4.46798 4.52906 4.68750 4.78451 4.86440 4.92277 4.93245 5.14405 5.16601 5.19691 5.26765 5.28338 5.31017 5.39516 5.45566 5.49767 5.57055 5.65043 5.72462 5.76147 5.97203 6.24398 6.39947 6.44658 6.47225 6.73469 6.77239 6.97567 7.09761 7.55361 7.63086 7.90118 8.17097 8.23253 8.34601 8.90152 8.96075 9.53397 11.02672 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.001896 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.947498 B =14761.146632 C =15362.781787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.591 5.591 3 C 0.106 3.894 4 C 0.425 3.575 5 N -0.438 5.438 6 O 0.064 5.936 7 C 0.216 3.784 8 C -0.011 4.011 9 H 0.121 0.879 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.107 3.893 13 N -0.633 5.633 14 C 0.704 3.296 15 O -0.593 6.593 16 N -0.737 5.737 17 C 0.138 3.862 18 C 0.013 3.987 19 C -0.520 4.520 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.139 3.861 28 N -0.505 5.505 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.393 0.607 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.022 0.978 45 H 0.022 0.978 46 H 0.262 0.738 47 H 0.074 0.926 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 25.977 -12.665 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.319 5.319 3 C -0.036 4.036 4 C 0.064 3.936 5 N -0.166 5.166 6 O 0.019 5.981 7 C -0.006 4.006 8 C -0.032 4.032 9 H 0.139 0.861 10 C -0.152 4.152 11 C -0.171 4.171 12 C -0.016 4.016 13 N -0.372 5.372 14 C 0.406 3.594 15 O -0.471 6.471 16 N -0.392 5.392 17 C 0.016 3.984 18 C -0.024 4.024 19 C -0.559 4.559 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C 0.014 3.986 28 N -0.245 5.245 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.229 0.771 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.367 26.976 -11.943 29.597 hybrid contribution -0.322 -0.862 0.184 0.939 sum 2.045 26.114 -11.759 28.712 Atomic orbital electron populations 1.21640 0.76804 1.03225 1.01879 1.45075 1.05424 0.99942 1.81496 1.21639 0.97146 0.83181 1.01682 1.22006 0.86077 0.87743 0.97741 1.74811 1.13721 0.95879 1.32178 1.85242 1.34149 1.11235 1.67460 1.28212 0.80459 0.97841 0.94052 1.20341 1.04466 0.79905 0.98518 0.86142 1.21609 1.01423 0.96320 0.95803 1.21919 1.02461 0.94331 0.98394 1.21707 0.97748 0.98075 0.84116 1.47163 1.65989 1.05281 1.18767 1.15929 0.78474 0.82125 0.82913 1.90893 1.55547 1.72330 1.28317 1.45713 1.63524 1.04306 1.25690 1.21626 0.96140 0.92037 0.88629 1.19324 0.97897 0.87563 0.97664 1.21049 1.38244 0.91460 1.05148 0.92210 1.24988 0.95427 0.98019 0.95847 1.69950 1.45511 1.10239 1.27625 0.86514 0.79386 0.79494 0.82173 1.20587 1.21194 1.19727 1.21300 1.00937 0.79590 0.96793 1.71846 1.29523 0.98224 1.24894 0.92875 0.90945 0.90529 0.92953 0.90644 0.90960 0.90813 0.90357 0.89666 0.90656 0.90938 0.89545 0.77112 0.92634 0.92784 0.95981 0.95954 0.92878 0.90748 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.74 10.60 59.85 0.63 1.38 16 2 N -0.59 -5.59 3.39 -193.17 -0.65 -6.24 16 3 C 0.11 0.70 10.59 59.85 0.63 1.34 16 4 C 0.42 5.17 8.33 -321.18 -2.68 2.50 16 5 N -0.44 -5.55 11.55 28.63 0.33 -5.22 16 6 O 0.06 0.74 11.29 18.09 0.20 0.95 16 7 C 0.22 2.36 7.01 -12.99 -0.09 2.27 16 8 C -0.01 -0.10 2.81 -91.65 -0.26 -0.36 16 9 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 10 C -0.11 -0.78 5.15 -26.69 -0.14 -0.92 16 11 C -0.13 -0.91 6.08 -26.61 -0.16 -1.07 16 12 C 0.11 0.94 6.43 -3.71 -0.02 0.92 16 13 N -0.63 -7.85 2.97 -178.50 -0.53 -8.38 16 14 C 0.70 12.11 8.30 -86.92 -0.72 11.39 16 15 O -0.59 -12.58 15.79 5.29 0.08 -12.50 16 16 N -0.74 -12.78 5.47 -65.22 -0.36 -13.14 16 17 C 0.14 2.93 5.62 -4.04 -0.02 2.91 16 18 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 19 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 23 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.14 1.53 5.68 -3.71 -0.02 1.51 16 28 N -0.51 -6.25 10.96 -12.68 -0.14 -6.39 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.08 0.61 7.69 -51.93 -0.40 0.21 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.31 8.07 -51.93 -0.42 -0.10 16 34 H 0.07 0.55 7.69 -51.92 -0.40 0.15 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.77 5.56 -51.93 -0.29 0.48 16 41 H 0.39 5.83 5.93 -40.82 -0.24 5.58 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.10 1.36 7.03 -51.93 -0.37 0.99 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -34.57 393.76 -10.38 -44.95 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.57 Total: -0.08 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -3.40 Total: 8.94 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -0.61 Total: -64.45 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.29 Total: -11.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.57 -10.38 -44.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338659262.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.510 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds