Wall clock time and date at job start Tue Mar 31 2020 21:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99903 * 2 1 4 4 C 1.38839 * 120.00122 * 180.02562 * 2 1 3 5 5 N 1.30635 * 126.38688 * 180.02562 * 4 2 1 6 6 O 1.21290 * 110.12182 * 179.72651 * 5 4 2 7 7 C 1.33649 * 109.98358 * 0.40291 * 6 5 4 8 8 C 1.50699 * 126.46042 * 179.86556 * 7 6 5 9 9 H 1.09004 * 109.49635 * 179.68523 * 8 7 6 10 10 C 1.53039 * 109.52550 * 299.76711 * 8 7 6 11 11 C 1.53040 * 109.53678 * 181.33410 * 10 8 7 12 12 C 1.53189 * 109.31525 * 298.63424 * 11 10 8 13 13 N 1.46928 * 108.77407 * 54.63621 * 12 11 10 14 14 C 1.34782 * 120.63003 * 126.41387 * 13 12 11 15 15 O 1.21584 * 119.99877 * 174.93407 * 14 13 12 16 16 N 1.34770 * 120.00025 * 354.94309 * 14 13 12 17 17 C 1.46506 * 120.00206 * 185.07399 * 16 14 13 18 18 C 1.52996 * 109.47080 * 179.97438 * 17 16 14 19 19 C 1.50705 * 109.46664 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99759 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99810 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00403 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47336 * 90.00256 * 23 21 19 25 25 H 1.48501 * 109.47291 * 210.00325 * 23 21 19 26 26 H 1.48503 * 109.46944 * 330.00299 * 23 21 19 27 27 C 1.46926 * 118.73985 * 306.39286 * 13 12 11 28 28 N 1.31042 * 107.07614 * 359.60166 * 7 6 5 29 29 H 1.09001 * 109.46944 * 269.99965 * 1 2 3 30 30 H 1.09000 * 109.47257 * 29.99682 * 1 2 3 31 31 H 1.08993 * 109.47459 * 150.00163 * 1 2 3 32 32 H 1.08998 * 109.47126 * 270.00115 * 3 2 1 33 33 H 1.08995 * 109.47288 * 30.00551 * 3 2 1 34 34 H 1.09008 * 109.47237 * 149.99958 * 3 2 1 35 35 H 1.08998 * 109.46172 * 301.35184 * 10 8 7 36 36 H 1.08993 * 109.45932 * 61.31377 * 10 8 7 37 37 H 1.08998 * 109.49836 * 178.68192 * 11 10 8 38 38 H 1.09006 * 109.49916 * 58.58978 * 11 10 8 39 39 H 1.09005 * 109.58992 * 294.84801 * 12 11 10 40 40 H 1.09003 * 109.70308 * 174.49340 * 12 11 10 41 41 H 0.97005 * 120.00156 * 5.06415 * 16 14 13 42 42 H 1.09004 * 109.46512 * 299.99546 * 17 16 14 43 43 H 1.09002 * 109.46527 * 59.99155 * 17 16 14 44 44 H 1.08999 * 109.47315 * 299.99840 * 18 17 16 45 45 H 1.08995 * 109.47326 * 59.99904 * 18 17 16 46 46 H 0.96996 * 120.00576 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.58612 * 293.82262 * 27 13 12 48 48 H 1.08996 * 109.58843 * 173.39432 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1592 -1.2024 -0.0005 5 7 3.4574 -1.3477 -0.0001 6 8 3.7454 -2.5259 0.0046 7 6 2.6338 -3.2678 -0.0010 8 6 2.5618 -4.7731 -0.0007 9 1 1.5180 -5.0873 -0.0006 10 6 3.2594 -5.3188 -1.2488 11 6 3.1574 -6.8457 -1.2657 12 6 3.8624 -7.4143 -0.0303 13 7 3.2945 -6.7849 1.1698 14 6 2.8148 -7.5387 2.1789 15 8 2.4324 -7.0093 3.2045 16 7 2.7592 -8.8792 2.0512 17 6 2.1363 -9.6898 3.1005 18 6 2.2042 -11.1678 2.7111 19 6 1.5640 -12.0017 3.7909 20 1 1.1498 -11.5250 4.6670 21 6 1.5063 -13.3730 3.6598 22 7 2.0103 -13.9534 2.5927 23 14 0.7121 -14.4066 4.9978 24 1 -0.7351 -14.5667 4.7063 25 1 1.3591 -15.7425 5.0410 26 1 0.8811 -13.7322 6.3101 27 6 3.2600 -5.3182 1.2492 28 7 1.6184 -2.4395 -0.0011 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 2.3791 1.5834 -1.0276 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1384 0.5139 35 1 2.7798 -4.9130 -2.1396 36 1 4.3089 -5.0250 -1.2359 37 1 3.6340 -7.2322 -2.1666 38 1 2.1080 -7.1405 -1.2537 39 1 4.9293 -7.1979 -0.0863 40 1 3.7103 -8.4927 0.0159 41 1 3.1314 -9.3073 1.2643 42 1 2.6663 -9.5367 4.0406 43 1 1.0941 -9.3929 3.2184 44 1 1.6740 -11.3207 1.7711 45 1 3.2463 -11.4649 2.5929 46 1 1.9700 -14.9182 2.5006 47 1 4.2777 -4.9308 1.2974 48 1 2.7082 -5.0132 2.1383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338659262.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:53 Heat of formation + Delta-G solvation = 31.418863 kcal Electronic energy + Delta-G solvation = -28930.196750 eV Core-core repulsion = 24830.086713 eV Total energy + Delta-G solvation = -4100.110037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.41396 -41.48859 -38.95151 -38.55170 -36.60625 -36.07357 -34.98975 -34.36139 -33.03293 -31.81033 -31.01359 -29.14816 -27.18102 -26.88377 -26.02245 -25.34571 -23.94470 -22.99988 -22.73498 -21.55357 -20.51335 -19.26507 -19.06677 -18.65244 -18.46673 -17.23223 -17.15447 -16.81195 -16.51511 -16.44056 -15.95017 -15.72094 -15.49727 -15.39009 -15.27883 -14.98288 -14.53896 -14.25492 -14.06107 -13.75499 -13.64420 -13.52387 -13.20642 -13.15318 -13.03419 -12.95804 -12.91871 -12.54062 -12.48427 -12.21827 -12.07353 -12.01165 -11.97563 -11.82705 -11.63278 -11.42123 -11.30395 -11.11491 -10.57678 -10.16237 -9.51397 -9.12413 -8.21515 -6.31149 0.14539 1.33543 1.43629 1.43965 1.46124 1.53888 1.57318 1.90425 2.12627 2.42677 2.76690 3.02930 3.13379 3.56180 3.61682 3.66732 3.83893 4.02924 4.14588 4.18836 4.36547 4.40003 4.41568 4.46222 4.51257 4.54735 4.60378 4.67015 4.72120 4.74575 4.77518 4.80165 4.87551 4.89700 4.98226 5.06101 5.09282 5.33345 5.38423 5.49512 5.54507 5.62908 5.80560 5.82958 5.91640 5.99656 6.20201 6.81564 6.99208 7.31567 7.37821 7.55506 8.90181 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.001896 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.947498 B =14761.146632 C =15362.781787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.595 5.595 3 C 0.103 3.897 4 C 0.413 3.587 5 N -0.457 5.457 6 O 0.061 5.939 7 C 0.223 3.777 8 C 0.000 4.000 9 H 0.113 0.887 10 C -0.107 4.107 11 C -0.125 4.125 12 C 0.098 3.902 13 N -0.623 5.623 14 C 0.701 3.299 15 O -0.638 6.638 16 N -0.731 5.731 17 C 0.159 3.841 18 C 0.025 3.975 19 C -0.546 4.546 20 H 0.057 0.943 21 C 0.009 3.991 22 N -0.924 5.924 23 Si 0.963 3.037 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.268 1.268 27 C 0.140 3.860 28 N -0.527 5.527 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.406 0.594 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.011 0.989 45 H 0.010 0.990 46 H 0.265 0.735 47 H 0.093 0.907 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 26.675 -13.875 30.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.323 5.323 3 C -0.039 4.039 4 C 0.053 3.947 5 N -0.188 5.188 6 O 0.018 5.982 7 C 0.001 3.999 8 C -0.021 4.021 9 H 0.131 0.869 10 C -0.145 4.145 11 C -0.163 4.163 12 C -0.024 4.024 13 N -0.360 5.360 14 C 0.403 3.597 15 O -0.520 6.520 16 N -0.388 5.388 17 C 0.035 3.965 18 C -0.013 4.013 19 C -0.585 4.585 20 H 0.076 0.924 21 C -0.190 4.190 22 N -0.564 5.564 23 Si 0.788 3.212 24 H -0.198 1.198 25 H -0.205 1.205 26 H -0.193 1.193 27 C 0.015 3.985 28 N -0.267 5.267 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.245 0.755 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.028 0.972 46 H 0.074 0.926 47 H 0.111 0.889 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.557 27.700 -13.217 30.798 hybrid contribution -0.364 -0.999 0.518 1.183 sum 2.193 26.701 -12.698 29.648 Atomic orbital electron populations 1.21780 0.75573 1.04122 1.02244 1.45542 1.06395 0.99800 1.80557 1.21812 0.96925 0.82624 1.02518 1.22405 0.86221 0.88624 0.97497 1.74774 1.14133 0.96274 1.33598 1.85204 1.34192 1.11116 1.67705 1.28450 0.80169 0.98197 0.93051 1.20290 1.04167 0.78867 0.98807 0.86887 1.21632 1.02044 0.96213 0.94627 1.21895 1.01984 0.94044 0.98341 1.22067 0.99226 0.97921 0.83147 1.47155 1.64632 1.05564 1.18613 1.16042 0.78388 0.81941 0.83340 1.90861 1.57550 1.73051 1.30553 1.45382 1.63611 1.04453 1.25365 1.21093 0.95660 0.90701 0.89069 1.19120 0.96510 0.89184 0.96462 1.21457 1.38702 0.92408 1.05892 0.92441 1.25823 0.95866 0.99227 0.98091 1.70044 1.46376 1.10725 1.29224 0.85478 0.78608 0.77797 0.79355 1.19814 1.20508 1.19262 1.21336 1.01787 0.78737 0.96648 1.71845 1.30240 0.98741 1.25875 0.92749 0.87841 0.91824 0.91998 0.87863 0.92307 0.89709 0.88907 0.86780 0.91560 0.88476 0.89688 0.75509 0.93993 0.93848 0.97065 0.97195 0.92567 0.88911 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.33 10.60 127.77 1.35 2.68 16 2 N -0.59 -10.68 3.39 -767.85 -2.60 -13.28 16 3 C 0.10 1.22 10.59 127.77 1.35 2.57 16 4 C 0.41 9.95 8.33 260.92 2.17 12.12 16 5 N -0.46 -11.48 11.55 -66.70 -0.77 -12.25 16 6 O 0.06 1.38 11.29 74.80 0.84 2.23 16 7 C 0.22 4.76 7.01 88.36 0.62 5.38 16 8 C 0.00 0.00 2.81 -11.46 -0.03 -0.03 16 9 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 10 C -0.11 -1.20 5.15 30.62 0.16 -1.04 16 11 C -0.12 -1.35 6.08 30.67 0.19 -1.16 16 12 C 0.10 1.50 6.43 86.36 0.56 2.05 16 13 N -0.62 -14.91 2.97 -836.90 -2.49 -17.40 16 14 C 0.70 24.31 8.30 179.05 1.49 25.79 16 15 O -0.64 -27.91 15.79 -3.98 -0.06 -27.97 16 16 N -0.73 -25.50 5.47 -478.53 -2.62 -28.12 16 17 C 0.16 6.90 5.62 86.38 0.49 7.39 16 18 C 0.02 1.23 5.09 29.85 0.15 1.39 16 19 C -0.55 -30.38 9.11 25.60 0.23 -30.14 16 20 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 21 C 0.01 0.49 5.46 84.65 0.46 0.95 16 22 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16 23 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 C 0.14 3.02 5.68 86.36 0.49 3.51 16 28 N -0.53 -13.00 10.96 -311.45 -3.41 -16.41 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.65 8.07 -2.39 -0.02 0.63 16 31 H 0.06 0.98 7.69 -2.39 -0.02 0.96 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.62 8.07 -2.39 -0.02 0.60 16 34 H 0.06 0.86 7.69 -2.38 -0.02 0.84 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.08 1.35 5.56 -2.39 -0.01 1.34 16 41 H 0.41 11.86 5.93 -92.70 -0.55 11.31 16 42 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 46 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 47 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.07 2.02 7.03 -2.39 -0.02 2.01 16 Total: -1.00 -75.92 393.76 1.30 -74.62 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.42 Total: 14.80 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: 9.68 Total: 31.45 kcal Atomic # 7 Polarization: -129.00 SS G_CDS: -11.60 Total: -140.60 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: 0.78 Total: -25.74 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -75.92 1.30 -74.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338659262.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.037 kcal (2) G-P(sol) polarization free energy of solvation -75.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds