Wall clock time and date at job start Tue Mar 31 2020 21:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99665 * 2 1 4 4 O 1.21583 * 120.00270 * 359.72083 * 3 2 1 5 5 N 1.34775 * 119.99585 * 179.72218 * 3 2 1 6 6 C 1.46507 * 119.99876 * 179.97438 * 5 3 2 7 7 H 1.08999 * 110.27384 * 34.30043 * 6 5 3 8 8 C 1.54593 * 110.30963 * 272.21154 * 6 5 3 9 9 C 1.55103 * 102.84490 * 219.18331 * 8 6 5 10 10 N 1.48531 * 103.28144 * 37.31051 * 9 8 6 11 11 C 1.46902 * 110.99849 * 200.32924 * 10 9 8 12 12 C 1.50699 * 109.47426 * 287.39871 * 11 10 9 13 13 O 1.21288 * 119.99735 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00202 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99894 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47165 * 90.00091 * 15 14 12 17 17 H 1.07991 * 119.99965 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99698 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00381 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99872 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47043 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47366 * 119.99302 * 20 18 16 23 23 H 1.48494 * 109.47024 * 239.99889 * 20 18 16 24 24 C 1.46497 * 120.00026 * 359.97438 * 14 12 11 25 25 C 1.52996 * 109.47169 * 89.99744 * 24 14 12 26 26 C 1.47205 * 109.47348 * 179.97438 * 25 24 14 27 27 N 9.31366 * 155.54341 * 266.36592 * 5 1 2 28 28 C 1.47899 * 105.81930 * 320.84276 * 10 9 8 29 29 H 1.09009 * 109.47454 * 300.27637 * 1 2 3 30 30 H 1.08998 * 109.47492 * 60.27932 * 1 2 3 31 31 H 1.08998 * 109.47377 * 180.28122 * 1 2 3 32 32 H 0.97001 * 119.99790 * 179.71713 * 2 1 3 33 33 H 0.97000 * 120.00523 * 0.02562 * 5 3 2 34 34 H 1.09001 * 110.72819 * 337.48475 * 8 6 5 35 35 H 1.09008 * 110.72396 * 100.77063 * 8 6 5 36 36 H 1.08997 * 110.59474 * 278.87316 * 9 8 6 37 37 H 1.09001 * 110.68431 * 155.78520 * 9 8 6 38 38 H 1.09007 * 109.46627 * 47.39401 * 11 10 9 39 39 H 1.08997 * 109.47389 * 167.39100 * 11 10 9 40 40 H 1.09005 * 109.47090 * 210.00130 * 15 14 12 41 41 H 1.09000 * 109.47497 * 329.99830 * 15 14 12 42 42 H 0.97000 * 120.00086 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.47053 * 210.00396 * 24 14 12 44 44 H 1.09003 * 109.47037 * 329.99667 * 24 14 12 45 45 H 1.08999 * 109.47665 * 300.00277 * 25 24 14 46 46 H 1.09009 * 109.47078 * 60.00467 * 25 24 14 47 47 H 1.09005 * 109.91758 * 265.97797 * 28 10 9 48 48 H 1.09005 * 110.07957 * 144.77640 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0051 5 7 3.4865 1.1672 0.0057 6 6 4.2191 2.4360 0.0051 7 1 3.6740 3.1871 0.5768 8 6 4.4450 2.9245 -1.4441 9 6 5.8839 3.5014 -1.3932 10 7 6.5939 2.5673 -0.4825 11 6 7.8046 3.1893 0.0702 12 6 8.8561 3.2847 -1.0051 13 8 8.6204 2.8744 -2.1218 14 7 10.0583 3.8260 -0.7258 15 6 11.0807 3.9181 -1.7710 16 6 10.9398 5.2312 -2.4971 17 1 10.1659 5.9271 -2.2091 18 6 11.7984 5.5434 -3.5298 19 7 12.7405 4.6957 -3.8808 20 14 11.6243 7.1713 -4.4293 21 1 10.4957 7.9407 -3.8465 22 1 12.8801 7.9512 -4.2891 23 1 11.3581 6.9159 -5.8677 24 6 10.3429 4.3221 0.6229 25 6 10.9408 3.1938 1.4657 26 6 11.2272 3.6925 2.8208 27 7 11.4484 4.0718 3.8679 28 6 5.6299 2.2389 0.5900 29 1 -0.3634 0.5181 0.8875 30 1 -0.3634 0.5095 -0.8924 31 1 -0.3634 -1.0276 0.0050 32 1 1.9500 -0.8401 0.0041 33 1 3.9716 0.3272 0.0094 34 1 4.3881 2.0918 -2.1452 35 1 3.7257 3.7006 -1.7061 36 1 5.8780 4.5105 -0.9812 37 1 6.3377 3.4920 -2.3842 38 1 7.5656 4.1886 0.4344 39 1 8.1811 2.5829 0.8939 40 1 12.0702 3.8579 -1.3177 41 1 10.9539 3.0972 -2.4768 42 1 13.3448 4.9156 -4.6071 43 1 11.0526 5.1472 0.5643 44 1 9.4187 4.6699 1.0846 45 1 10.2310 2.3687 1.5243 46 1 11.8650 2.8460 1.0041 47 1 5.7767 2.9070 1.4387 48 1 5.7596 1.2037 0.9058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342377501.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:36 Heat of formation + Delta-G solvation = -19.177121 kcal Electronic energy + Delta-G solvation = -29086.819700 eV Core-core repulsion = 24984.515656 eV Total energy + Delta-G solvation = -4102.304044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.44317 -39.55330 -38.25888 -36.85214 -35.25710 -34.84049 -34.47443 -32.91540 -31.26295 -30.84345 -28.83229 -27.97807 -26.62644 -25.57055 -24.00884 -22.71821 -21.59358 -21.16562 -20.77513 -19.01352 -18.49977 -17.64495 -16.87154 -16.61596 -16.46204 -16.09956 -15.68835 -15.28829 -15.09961 -14.86667 -14.71670 -14.52453 -14.21612 -13.96571 -13.79814 -13.46587 -13.39039 -12.83166 -12.73533 -12.58596 -12.46475 -12.44700 -12.21404 -12.14591 -11.86030 -11.81792 -11.57391 -11.31643 -11.18162 -10.99117 -10.93226 -10.78529 -10.64089 -10.44055 -10.19354 -9.69349 -9.57023 -9.15652 -8.97362 -8.48480 -8.35758 -7.83373 -6.09766 -4.14241 2.45257 2.71131 2.79077 2.97495 3.27253 3.30762 3.35998 3.39160 3.49239 3.91640 4.01374 4.25196 4.39162 4.44083 4.67511 4.85071 4.91403 4.95980 5.07797 5.10666 5.20488 5.21729 5.25209 5.27214 5.30630 5.38449 5.44998 5.49724 5.51206 5.62254 5.80974 5.86446 6.04099 6.05257 6.11957 6.21966 6.35228 6.61249 6.76997 6.83786 7.01582 7.36611 7.43909 7.55107 7.73771 7.86689 8.16736 8.27220 8.35971 8.84971 9.01757 9.51509 10.98295 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.002592 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.014049 B =10798.372971 C =12683.503756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.702 3.298 4 O -0.591 6.591 5 N -0.735 5.735 6 C 0.155 3.845 7 H 0.095 0.905 8 C -0.132 4.132 9 C 0.037 3.963 10 N -0.494 5.494 11 C 0.023 3.977 12 C 0.510 3.490 13 O -0.513 6.513 14 N -0.600 5.600 15 C 0.246 3.754 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.896 3.104 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.118 3.882 25 C -0.051 4.051 26 C 0.217 3.783 27 N -0.446 5.446 28 C 0.029 3.971 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.398 0.602 33 H 0.398 0.602 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.263 0.737 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.118 0.882 47 H 0.056 0.944 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.031 -10.526 10.732 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.409 5.409 3 C 0.402 3.598 4 O -0.469 6.469 5 N -0.390 5.390 6 C 0.049 3.951 7 H 0.113 0.887 8 C -0.172 4.172 9 C -0.091 4.091 10 N -0.218 5.218 11 C -0.109 4.109 12 C 0.295 3.705 13 O -0.387 6.387 14 N -0.333 5.333 15 C 0.127 3.873 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.009 4.009 25 C -0.092 4.092 26 C -0.101 4.101 27 N -0.123 5.123 28 C -0.100 4.100 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.230 0.770 33 H 0.233 0.767 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.124 0.876 46 H 0.136 0.864 47 H 0.074 0.926 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.076 -9.687 11.263 22.634 hybrid contribution 0.255 0.685 -0.415 0.840 sum -16.822 -9.001 10.848 21.947 Atomic orbital electron populations 1.21379 0.78215 1.01882 1.02268 1.44929 1.07770 1.07208 1.80963 1.15984 0.81879 0.84250 0.77694 1.90931 1.67908 1.30317 1.57741 1.45232 1.04452 1.09504 1.79824 1.21674 0.91098 0.85142 0.97194 0.88726 1.22976 0.96326 1.01505 0.96345 1.23373 0.92686 0.93367 0.99631 1.64528 1.03412 1.40058 1.13798 1.22341 0.92064 0.99165 0.97309 1.20089 0.82709 0.78613 0.89080 1.90687 1.78567 1.46731 1.22743 1.48218 1.15078 1.59500 1.10495 1.19332 0.84679 0.98160 0.85111 1.21441 1.15586 1.02719 1.16813 0.92414 1.24916 0.95154 0.97210 0.96738 1.69925 1.18442 1.35515 1.29325 0.86479 0.77847 0.83522 0.79787 1.19823 1.21011 1.20892 1.21288 1.01313 0.95140 0.83130 1.19919 1.05044 1.00285 0.83977 1.29109 0.92944 0.93371 0.94684 1.81188 1.09370 1.09085 1.12698 1.23138 0.90539 1.02318 0.93984 0.92458 0.92379 0.90739 0.76952 0.76717 0.90225 0.90517 0.93711 0.87951 0.91941 0.88499 0.94800 0.93531 0.92734 0.88778 0.90891 0.87590 0.86437 0.92576 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.65 10.70 59.85 0.64 1.29 16 2 N -0.75 -5.28 5.72 -72.07 -0.41 -5.69 16 3 C 0.70 7.47 8.56 -86.92 -0.74 6.72 16 4 O -0.59 -8.88 16.02 5.29 0.08 -8.80 16 5 N -0.73 -6.35 5.07 -57.35 -0.29 -6.64 16 6 C 0.15 1.55 3.31 -66.57 -0.22 1.33 16 7 H 0.09 1.05 7.60 -51.93 -0.39 0.66 16 8 C -0.13 -1.53 6.79 -24.78 -0.17 -1.69 16 9 C 0.04 0.49 5.94 -1.81 -0.01 0.48 16 10 N -0.49 -6.17 4.91 -231.78 -1.14 -7.31 16 11 C 0.02 0.28 3.75 -4.98 -0.02 0.26 16 12 C 0.51 9.00 7.50 -10.99 -0.08 8.91 16 13 O -0.51 -11.50 14.65 5.55 0.08 -11.41 16 14 N -0.60 -10.55 2.46 -175.06 -0.43 -10.98 16 15 C 0.25 5.69 5.16 -5.19 -0.03 5.67 16 16 C -0.53 -13.83 9.39 -34.44 -0.32 -14.15 16 17 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 20 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.12 1.49 5.17 -4.05 -0.02 1.47 16 25 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 26 C 0.22 2.51 15.43 -20.78 -0.32 2.19 16 27 N -0.45 -6.37 18.53 42.13 0.78 -5.59 16 28 C 0.03 0.27 6.43 -2.76 -0.02 0.25 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.40 1.56 8.84 -40.82 -0.36 1.20 16 33 H 0.40 2.45 8.34 -40.82 -0.34 2.11 16 34 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 35 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.04 0.57 7.81 -51.93 -0.41 0.16 16 37 H 0.10 1.68 7.10 -51.93 -0.37 1.31 16 38 H 0.06 0.70 7.09 -51.92 -0.37 0.33 16 39 H 0.10 0.92 7.12 -51.93 -0.37 0.55 16 40 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 44 H 0.07 0.76 6.44 -51.93 -0.33 0.42 16 45 H 0.11 0.82 7.22 -51.93 -0.37 0.45 16 46 H 0.12 1.16 8.14 -51.92 -0.42 0.74 16 47 H 0.06 0.46 7.77 -51.93 -0.40 0.05 16 48 H 0.09 0.66 7.63 -51.93 -0.40 0.27 16 LS Contribution 402.55 15.07 6.07 6.07 Total: -1.00 -36.12 402.55 -8.55 -44.67 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.42 Total: 0.52 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: -1.59 Total: 13.64 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.75 Total: -60.76 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.17 Total: -20.21 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.12 -8.55 -44.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342377501.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.496 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds