Wall clock time and date at job start Tue Mar 31 2020 21:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99665 * 2 1 4 4 O 1.21583 * 120.00270 * 359.72083 * 3 2 1 5 5 N 1.34775 * 119.99585 * 179.72218 * 3 2 1 6 6 C 1.46507 * 119.99876 * 179.97438 * 5 3 2 7 7 H 1.08999 * 110.27384 * 34.30043 * 6 5 3 8 8 C 1.54593 * 110.30963 * 272.21154 * 6 5 3 9 9 C 1.55103 * 102.84490 * 219.18331 * 8 6 5 10 10 N 1.48531 * 103.28144 * 37.31051 * 9 8 6 11 11 C 1.46902 * 110.99849 * 200.32924 * 10 9 8 12 12 C 1.50699 * 109.47426 * 287.39871 * 11 10 9 13 13 O 1.21288 * 119.99735 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00202 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99894 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47165 * 90.00091 * 15 14 12 17 17 H 1.07991 * 119.99965 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99698 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00381 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99872 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47043 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47366 * 119.99302 * 20 18 16 23 23 H 1.48494 * 109.47024 * 239.99889 * 20 18 16 24 24 C 1.46497 * 120.00026 * 359.97438 * 14 12 11 25 25 C 1.52996 * 109.47169 * 89.99744 * 24 14 12 26 26 C 1.47205 * 109.47348 * 179.97438 * 25 24 14 27 27 N 9.31366 * 155.54341 * 266.36592 * 5 1 2 28 28 C 1.47899 * 105.81930 * 320.84276 * 10 9 8 29 29 H 1.09009 * 109.47454 * 300.27637 * 1 2 3 30 30 H 1.08998 * 109.47492 * 60.27932 * 1 2 3 31 31 H 1.08998 * 109.47377 * 180.28122 * 1 2 3 32 32 H 0.97001 * 119.99790 * 179.71713 * 2 1 3 33 33 H 0.97000 * 120.00523 * 0.02562 * 5 3 2 34 34 H 1.09001 * 110.72819 * 337.48475 * 8 6 5 35 35 H 1.09008 * 110.72396 * 100.77063 * 8 6 5 36 36 H 1.08997 * 110.59474 * 278.87316 * 9 8 6 37 37 H 1.09001 * 110.68431 * 155.78520 * 9 8 6 38 38 H 1.09007 * 109.46627 * 47.39401 * 11 10 9 39 39 H 1.08997 * 109.47389 * 167.39100 * 11 10 9 40 40 H 1.09005 * 109.47090 * 210.00130 * 15 14 12 41 41 H 1.09000 * 109.47497 * 329.99830 * 15 14 12 42 42 H 0.97000 * 120.00086 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.47053 * 210.00396 * 24 14 12 44 44 H 1.09003 * 109.47037 * 329.99667 * 24 14 12 45 45 H 1.08999 * 109.47665 * 300.00277 * 25 24 14 46 46 H 1.09009 * 109.47078 * 60.00467 * 25 24 14 47 47 H 1.09005 * 109.91758 * 265.97797 * 28 10 9 48 48 H 1.09005 * 110.07957 * 144.77640 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0051 5 7 3.4865 1.1672 0.0057 6 6 4.2191 2.4360 0.0051 7 1 3.6740 3.1871 0.5768 8 6 4.4450 2.9245 -1.4441 9 6 5.8839 3.5014 -1.3932 10 7 6.5939 2.5673 -0.4825 11 6 7.8046 3.1893 0.0702 12 6 8.8561 3.2847 -1.0051 13 8 8.6204 2.8744 -2.1218 14 7 10.0583 3.8260 -0.7258 15 6 11.0807 3.9181 -1.7710 16 6 10.9398 5.2312 -2.4971 17 1 10.1659 5.9271 -2.2091 18 6 11.7984 5.5434 -3.5298 19 7 12.7405 4.6957 -3.8808 20 14 11.6243 7.1713 -4.4293 21 1 10.4957 7.9407 -3.8465 22 1 12.8801 7.9512 -4.2891 23 1 11.3581 6.9159 -5.8677 24 6 10.3429 4.3221 0.6229 25 6 10.9408 3.1938 1.4657 26 6 11.2272 3.6925 2.8208 27 7 11.4484 4.0718 3.8679 28 6 5.6299 2.2389 0.5900 29 1 -0.3634 0.5181 0.8875 30 1 -0.3634 0.5095 -0.8924 31 1 -0.3634 -1.0276 0.0050 32 1 1.9500 -0.8401 0.0041 33 1 3.9716 0.3272 0.0094 34 1 4.3881 2.0918 -2.1452 35 1 3.7257 3.7006 -1.7061 36 1 5.8780 4.5105 -0.9812 37 1 6.3377 3.4920 -2.3842 38 1 7.5656 4.1886 0.4344 39 1 8.1811 2.5829 0.8939 40 1 12.0702 3.8579 -1.3177 41 1 10.9539 3.0972 -2.4768 42 1 13.3448 4.9156 -4.6071 43 1 11.0526 5.1472 0.5643 44 1 9.4187 4.6699 1.0846 45 1 10.2310 2.3687 1.5243 46 1 11.8650 2.8460 1.0041 47 1 5.7767 2.9070 1.4387 48 1 5.7596 1.2037 0.9058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342377501.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:35 Heat of formation + Delta-G solvation = -48.015753 kcal Electronic energy + Delta-G solvation = -29088.070237 eV Core-core repulsion = 24984.515656 eV Total energy + Delta-G solvation = -4103.554581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.31300 -40.73095 -39.28363 -37.91599 -36.59952 -35.56545 -35.40021 -34.81574 -32.31138 -32.03543 -29.78294 -29.38223 -27.59787 -26.58432 -25.26259 -24.29656 -22.46968 -22.09668 -21.59438 -19.95183 -19.60320 -18.78293 -18.30549 -17.87795 -17.59091 -17.27490 -16.62269 -16.44607 -16.18842 -15.94289 -15.82688 -15.53390 -15.29155 -15.11023 -14.81124 -14.56605 -14.27354 -14.11801 -13.90086 -13.61631 -13.51647 -13.40312 -13.27501 -13.16057 -12.99417 -12.93095 -12.73887 -12.69013 -12.57432 -12.49765 -12.19328 -12.14134 -11.84274 -11.76080 -11.60925 -11.36764 -10.57502 -10.49280 -10.32948 -9.75375 -9.39726 -9.30520 -8.16183 -6.27856 1.38891 1.41891 1.51666 1.73620 1.78496 1.88259 1.99769 2.16379 2.28357 2.45000 3.00450 3.14998 3.24427 3.39467 3.58681 3.74122 3.90982 4.08719 4.16291 4.19253 4.31418 4.37246 4.40320 4.47443 4.48953 4.65362 4.69093 4.72915 4.83020 4.89095 4.92317 5.00674 5.08857 5.10514 5.14524 5.16495 5.38614 5.52513 5.60052 5.65279 5.86250 5.89883 5.98574 6.08225 6.16498 6.64592 6.80873 6.89066 7.13997 7.38258 7.62112 7.64310 8.90337 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.002592 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.014049 B =10798.372971 C =12683.503756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.695 3.305 4 O -0.640 6.640 5 N -0.723 5.723 6 C 0.161 3.839 7 H 0.086 0.914 8 C -0.126 4.126 9 C 0.040 3.960 10 N -0.511 5.511 11 C 0.033 3.967 12 C 0.502 3.498 13 O -0.571 6.571 14 N -0.601 5.601 15 C 0.261 3.739 16 C -0.535 4.535 17 H 0.052 0.948 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.955 3.045 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.286 1.286 24 C 0.114 3.886 25 C -0.037 4.037 26 C 0.247 3.753 27 N -0.491 5.491 28 C 0.037 3.963 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.112 0.888 32 H 0.415 0.585 33 H 0.413 0.587 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.139 0.861 40 H 0.033 0.967 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.140 0.860 46 H 0.119 0.881 47 H 0.079 0.921 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.027 -11.316 13.035 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.396 5.396 3 C 0.395 3.605 4 O -0.522 6.522 5 N -0.379 5.379 6 C 0.054 3.946 7 H 0.104 0.896 8 C -0.165 4.165 9 C -0.088 4.088 10 N -0.236 5.236 11 C -0.098 4.098 12 C 0.291 3.709 13 O -0.450 6.450 14 N -0.333 5.333 15 C 0.140 3.860 16 C -0.574 4.574 17 H 0.070 0.930 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.781 3.219 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.212 1.212 24 C -0.011 4.011 25 C -0.079 4.079 26 C -0.071 4.071 27 N -0.169 5.169 28 C -0.091 4.091 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.251 0.749 33 H 0.250 0.750 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.157 0.843 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.124 0.876 45 H 0.158 0.842 46 H 0.136 0.864 47 H 0.097 0.903 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.062 -10.525 13.626 24.954 hybrid contribution 0.533 0.879 -1.171 1.558 sum -17.529 -9.646 12.456 23.568 Atomic orbital electron populations 1.21510 0.77530 1.03973 1.01058 1.44861 1.08246 1.06936 1.79541 1.16255 0.82313 0.84474 0.77501 1.90899 1.68948 1.32318 1.59990 1.45061 1.03914 1.09798 1.79120 1.21527 0.91895 0.85532 0.95622 0.89563 1.22868 0.95161 1.00907 0.97613 1.23183 0.93330 0.94142 0.98138 1.64444 1.04162 1.39806 1.15173 1.22342 0.90274 1.01368 0.95808 1.21110 0.83168 0.77019 0.89635 1.90669 1.79566 1.49135 1.25583 1.48089 1.14234 1.59685 1.11293 1.18755 0.86244 0.95133 0.85852 1.21773 1.14887 1.03668 1.17027 0.92994 1.25705 0.95109 1.00353 0.97734 1.70025 1.19329 1.37209 1.30025 0.85552 0.78197 0.79958 0.78208 1.19285 1.19943 1.21223 1.21505 1.02920 0.95709 0.80971 1.19850 1.05844 0.99875 0.82285 1.29152 0.91528 0.92038 0.94335 1.81236 1.10965 1.10464 1.14276 1.23179 0.88489 1.04156 0.93236 0.93454 0.93870 0.86979 0.74900 0.74986 0.91195 0.91282 0.93242 0.92047 0.89786 0.84315 0.94900 0.97897 0.92661 0.90103 0.87611 0.84248 0.86350 0.90305 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 10.70 127.77 1.37 2.46 16 2 N -0.74 -8.96 5.72 -500.19 -2.86 -11.82 16 3 C 0.69 13.92 8.56 179.05 1.53 15.45 16 4 O -0.64 -19.13 16.02 -3.98 -0.06 -19.20 16 5 N -0.72 -11.04 5.07 -453.62 -2.30 -13.34 16 6 C 0.16 2.92 3.31 45.87 0.15 3.07 16 7 H 0.09 1.78 7.60 -2.39 -0.02 1.76 16 8 C -0.13 -2.90 6.79 31.86 0.22 -2.68 16 9 C 0.04 1.06 5.94 86.71 0.51 1.58 16 10 N -0.51 -11.63 4.91 -887.22 -4.35 -15.99 16 11 C 0.03 0.70 3.75 85.56 0.32 1.03 16 12 C 0.50 17.30 7.50 87.66 0.66 17.96 16 13 O -0.57 -26.38 14.65 -3.06 -0.04 -26.42 16 14 N -0.60 -20.64 2.46 -826.16 -2.03 -22.67 16 15 C 0.26 12.40 5.16 85.63 0.44 12.84 16 16 C -0.53 -28.59 9.39 25.60 0.24 -28.35 16 17 H 0.05 2.77 7.81 -2.92 -0.02 2.75 16 18 C 0.01 0.55 5.46 84.66 0.46 1.01 16 19 N -0.93 -53.57 13.29 21.45 0.28 -53.29 16 20 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 24 C 0.11 2.58 5.17 86.38 0.45 3.03 16 25 C -0.04 -0.61 6.03 28.79 0.17 -0.44 16 26 C 0.25 4.97 15.43 89.45 1.38 6.35 16 27 N -0.49 -12.97 18.53 20.00 0.37 -12.60 16 28 C 0.04 0.54 6.43 86.45 0.56 1.10 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.41 2.10 8.84 -92.71 -0.82 1.28 16 33 H 0.41 3.88 8.34 -92.71 -0.77 3.10 16 34 H 0.07 1.72 8.06 -2.39 -0.02 1.70 16 35 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.05 1.23 7.81 -2.39 -0.02 1.21 16 37 H 0.06 2.13 7.10 -2.39 -0.02 2.12 16 38 H 0.08 1.50 7.09 -2.38 -0.02 1.48 16 39 H 0.14 1.82 7.12 -2.39 -0.02 1.81 16 40 H 0.03 1.55 8.07 -2.38 -0.02 1.53 16 41 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 42 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 44 H 0.11 1.75 6.44 -2.39 -0.02 1.73 16 45 H 0.14 1.44 7.22 -2.39 -0.02 1.42 16 46 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.08 0.87 7.77 -2.38 -0.02 0.85 16 48 H 0.11 1.15 7.63 -2.38 -0.02 1.13 16 Total: -1.00 -84.15 402.55 -1.10 -85.25 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -0.60 Total: 9.92 kcal Atomic # 6 Polarization: 25.94 SS G_CDS: 8.46 Total: 34.41 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -10.89 Total: -129.71 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -0.11 Total: -45.62 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -84.15 -1.10 -85.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342377501.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.234 kcal (2) G-P(sol) polarization free energy of solvation -84.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds