Wall clock time and date at job start Tue Mar 31 2020 21:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21592 * 119.99797 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99902 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99966 * 179.97438 * 5 3 2 7 7 H 1.09005 * 110.28893 * 324.32361 * 6 5 3 8 8 C 1.54255 * 110.32685 * 86.44968 * 6 5 3 9 9 C 1.54384 * 105.05839 * 118.89568 * 8 6 5 10 10 N 1.48554 * 104.59467 * 23.85821 * 9 8 6 11 11 C 1.46899 * 111.00101 * 200.95746 * 10 9 8 12 12 C 1.50694 * 109.47523 * 290.12628 * 11 10 9 13 13 O 1.21291 * 119.99519 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00369 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99955 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47067 * 90.00193 * 15 14 12 17 17 H 1.08005 * 120.00375 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99932 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00222 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00154 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46744 * 60.00193 * 20 18 16 22 22 H 1.48497 * 109.47335 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46911 * 300.00581 * 20 18 16 24 24 C 1.46503 * 120.00068 * 0.02562 * 14 12 11 25 25 C 1.52993 * 109.47334 * 89.99657 * 24 14 12 26 26 C 1.47197 * 109.47098 * 179.97438 * 25 24 14 27 27 N 8.99846 * 154.26582 * 31.81945 * 5 1 2 28 28 C 1.48567 * 104.22355 * 320.51374 * 10 9 8 29 29 H 1.09001 * 109.46577 * 60.00430 * 1 2 3 30 30 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47212 * 300.00355 * 1 2 3 32 32 H 0.96995 * 120.00050 * 179.72114 * 2 1 3 33 33 H 0.96999 * 120.00050 * 0.02562 * 5 3 2 34 34 H 1.08994 * 110.33099 * 237.79138 * 8 6 5 35 35 H 1.09002 * 110.32441 * 0.02562 * 8 6 5 36 36 H 1.09001 * 110.41284 * 142.63393 * 9 8 6 37 37 H 1.09003 * 110.41484 * 265.07721 * 9 8 6 38 38 H 1.08999 * 109.46907 * 50.12963 * 11 10 9 39 39 H 1.09005 * 109.47298 * 170.12615 * 11 10 9 40 40 H 1.09007 * 109.46890 * 210.00157 * 15 14 12 41 41 H 1.09002 * 109.47256 * 330.00007 * 15 14 12 42 42 H 0.97007 * 120.00371 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46849 * 210.00159 * 24 14 12 44 44 H 1.08999 * 109.46890 * 329.99515 * 24 14 12 45 45 H 1.08992 * 109.47433 * 300.00297 * 25 24 14 46 46 H 1.09006 * 109.47273 * 60.00495 * 25 24 14 47 47 H 1.09000 * 110.40916 * 280.70814 * 28 10 9 48 48 H 1.08996 * 110.41140 * 158.25585 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2191 2.4359 0.0000 7 1 3.6891 3.1782 -0.5970 8 6 4.4089 2.9458 1.4434 9 6 5.9377 3.0041 1.6504 10 7 6.4965 3.1297 0.2797 11 6 7.9030 2.7074 0.2439 12 6 8.7488 3.7140 0.9804 13 8 8.2307 4.6872 1.4859 14 7 10.0806 3.5323 1.0783 15 6 10.9026 4.5106 1.7948 16 6 10.9968 4.1200 3.2472 17 1 10.4949 3.2316 3.6011 18 6 11.7245 4.8962 4.1240 19 7 12.3362 5.9777 3.6931 20 14 11.8407 4.4124 5.9246 21 1 12.4603 3.0674 6.0368 22 1 12.6751 5.4033 6.6507 23 1 10.4796 4.3813 6.5176 24 6 10.7063 2.3564 0.4682 25 6 11.1146 2.6842 -0.9694 26 6 11.7439 1.5029 -1.5821 27 7 12.2273 0.5932 -2.0597 28 6 5.6491 2.2293 -0.5439 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.9500 -0.8400 0.0041 33 1 3.9717 0.3272 0.0005 34 1 3.9737 3.9388 1.5546 35 1 3.9575 2.2518 2.1525 36 1 6.2070 3.8725 2.2517 37 1 6.2926 2.0884 2.1232 38 1 8.0017 1.7320 0.7202 39 1 8.2363 2.6413 -0.7919 40 1 11.9017 4.5341 1.3594 41 1 10.4472 5.4975 1.7128 42 1 12.8479 6.5240 4.3101 43 1 11.5897 2.0761 1.0420 44 1 9.9975 1.5284 0.4647 45 1 10.2314 2.9645 -1.5431 46 1 11.8236 3.5122 -0.9659 47 1 5.9589 1.1923 -0.4144 48 1 5.7011 2.5143 -1.5946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342377510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:41 Heat of formation + Delta-G solvation = -18.397006 kcal Electronic energy + Delta-G solvation = -29113.274800 eV Core-core repulsion = 25011.004585 eV Total energy + Delta-G solvation = -4102.270216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.47484 -39.57313 -38.25967 -36.86280 -35.27574 -34.86063 -34.49443 -32.92011 -31.27117 -30.85328 -28.82435 -27.98688 -26.65942 -25.56821 -24.01893 -22.75057 -21.68485 -21.30630 -20.56565 -18.90400 -18.53805 -17.67403 -16.91341 -16.67917 -16.43394 -16.02845 -15.73770 -15.45159 -15.08451 -14.85785 -14.73272 -14.59591 -14.17182 -14.02987 -13.65867 -13.48093 -13.40550 -13.10187 -12.66511 -12.60558 -12.52052 -12.45828 -12.20289 -12.02831 -11.88523 -11.83827 -11.42795 -11.33299 -11.24660 -11.02324 -10.90029 -10.76588 -10.61755 -10.44402 -10.19820 -9.73693 -9.58862 -9.14876 -9.04103 -8.48133 -8.42294 -7.84499 -6.09719 -4.14544 2.39551 2.70011 2.77969 2.95385 3.28066 3.29772 3.33927 3.37176 3.48494 3.84953 4.07247 4.27838 4.37425 4.40653 4.68583 4.82744 4.92325 4.94015 5.07390 5.09295 5.17156 5.19147 5.25125 5.25604 5.32764 5.35917 5.43262 5.48780 5.51839 5.70674 5.80076 5.87405 6.03696 6.06226 6.09291 6.25237 6.26805 6.56875 6.74807 6.82534 7.00284 7.36594 7.42753 7.54007 7.69351 7.86041 8.16322 8.26102 8.33533 8.83779 9.00401 9.50950 10.98256 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.002632 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.270310 B =10634.370445 C =12461.186455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.754 5.754 3 C 0.702 3.298 4 O -0.586 6.586 5 N -0.740 5.740 6 C 0.160 3.840 7 H 0.101 0.899 8 C -0.132 4.132 9 C 0.033 3.967 10 N -0.485 5.485 11 C 0.022 3.978 12 C 0.509 3.491 13 O -0.512 6.512 14 N -0.600 5.600 15 C 0.247 3.753 16 C -0.529 4.529 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.896 3.104 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.118 3.882 25 C -0.051 4.051 26 C 0.217 3.783 27 N -0.447 5.447 28 C 0.027 3.973 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.396 0.604 33 H 0.394 0.606 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.118 0.882 47 H 0.048 0.952 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.870 -13.922 -9.892 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.402 3.598 4 O -0.463 6.463 5 N -0.395 5.395 6 C 0.055 3.945 7 H 0.119 0.881 8 C -0.172 4.172 9 C -0.094 4.094 10 N -0.209 5.209 11 C -0.109 4.109 12 C 0.294 3.706 13 O -0.386 6.386 14 N -0.333 5.333 15 C 0.128 3.872 16 C -0.568 4.568 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.008 4.008 25 C -0.093 4.093 26 C -0.101 4.101 27 N -0.124 5.124 28 C -0.102 4.102 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.229 0.771 33 H 0.228 0.772 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.136 0.864 47 H 0.066 0.934 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.892 -13.006 -10.452 23.042 hybrid contribution 0.620 -1.691 1.507 2.348 sum -15.272 -14.697 -8.945 23.006 Atomic orbital electron populations 1.21387 0.78151 1.01879 1.02351 1.44942 1.07807 1.07152 1.81038 1.15972 0.81816 0.84274 0.77766 1.90953 1.67785 1.30240 1.57345 1.45294 1.04615 1.09463 1.80134 1.21545 0.91041 0.84718 0.97226 0.88075 1.22765 0.95928 1.02561 0.95929 1.23256 0.93267 1.02170 0.90726 1.65185 1.00303 1.46854 1.08558 1.22324 0.89783 0.97026 1.01804 1.20073 0.82461 0.86968 0.81055 1.90694 1.71459 1.30199 1.46286 1.48219 1.06755 1.24533 1.53755 1.19328 0.89333 0.87837 0.90724 1.21355 1.31520 1.10333 0.93548 0.92570 1.24912 0.95373 0.94800 0.98864 1.69905 1.32852 1.14827 1.35554 0.86595 0.78135 0.78114 0.84786 1.20323 1.21190 1.20183 1.21284 1.00155 0.88927 0.90457 1.19923 1.01558 0.90799 0.97003 1.29111 0.93268 0.94403 0.93279 1.81189 1.09883 1.11643 1.09680 1.23372 0.91868 0.95586 0.99351 0.92362 0.90757 0.92357 0.77071 0.77228 0.90039 0.91115 0.87865 0.94159 0.92124 0.88338 0.94789 0.93494 0.92597 0.88785 0.90958 0.87529 0.86404 0.93408 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.63 10.70 59.85 0.64 1.27 16 2 N -0.75 -5.10 5.72 -72.06 -0.41 -5.51 16 3 C 0.70 7.35 8.56 -86.92 -0.74 6.61 16 4 O -0.59 -8.86 16.04 5.28 0.08 -8.78 16 5 N -0.74 -6.11 5.05 -57.32 -0.29 -6.40 16 6 C 0.16 1.64 3.36 -66.55 -0.22 1.41 16 7 H 0.10 1.22 7.64 -51.93 -0.40 0.82 16 8 C -0.13 -1.56 6.78 -25.35 -0.17 -1.73 16 9 C 0.03 0.45 5.80 -2.18 -0.01 0.44 16 10 N -0.48 -6.21 5.06 -231.41 -1.17 -7.38 16 11 C 0.02 0.27 3.85 -4.98 -0.02 0.26 16 12 C 0.51 9.02 7.48 -10.99 -0.08 8.93 16 13 O -0.51 -11.57 14.42 5.55 0.08 -11.49 16 14 N -0.60 -10.53 2.46 -175.06 -0.43 -10.96 16 15 C 0.25 5.71 5.16 -5.19 -0.03 5.69 16 16 C -0.53 -13.85 9.39 -34.44 -0.32 -14.17 16 17 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 20 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 C 0.12 1.48 5.17 -4.04 -0.02 1.46 16 25 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 26 C 0.22 2.48 15.43 -20.78 -0.32 2.16 16 27 N -0.45 -6.29 18.53 42.13 0.78 -5.51 16 28 C 0.03 0.25 6.19 -2.18 -0.01 0.23 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.40 1.41 8.84 -40.82 -0.36 1.05 16 33 H 0.39 2.08 8.36 -40.82 -0.34 1.74 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 36 H 0.10 1.74 6.91 -51.93 -0.36 1.38 16 37 H 0.04 0.51 7.82 -51.93 -0.41 0.10 16 38 H 0.06 0.65 7.14 -51.93 -0.37 0.28 16 39 H 0.10 0.94 7.18 -51.93 -0.37 0.57 16 40 H 0.03 0.78 8.07 -51.92 -0.42 0.36 16 41 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 44 H 0.07 0.73 6.44 -51.93 -0.33 0.40 16 45 H 0.11 0.83 7.22 -51.93 -0.38 0.46 16 46 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.05 0.35 7.59 -51.93 -0.39 -0.05 16 48 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -36.19 402.41 -8.60 -44.79 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.43 Total: 0.23 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: -1.59 Total: 13.50 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.79 Total: -60.29 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.16 Total: -20.26 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.19 -8.60 -44.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342377510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.390 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds