Wall clock time and date at job start Tue Mar 31 2020 21:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21592 * 119.99797 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99902 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99966 * 179.97438 * 5 3 2 7 7 H 1.09005 * 110.28893 * 324.32361 * 6 5 3 8 8 C 1.54255 * 110.32685 * 86.44968 * 6 5 3 9 9 C 1.54384 * 105.05839 * 118.89568 * 8 6 5 10 10 N 1.48554 * 104.59467 * 23.85821 * 9 8 6 11 11 C 1.46899 * 111.00101 * 200.95746 * 10 9 8 12 12 C 1.50694 * 109.47523 * 290.12628 * 11 10 9 13 13 O 1.21291 * 119.99519 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00369 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99955 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47067 * 90.00193 * 15 14 12 17 17 H 1.08005 * 120.00375 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99932 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00222 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00154 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46744 * 60.00193 * 20 18 16 22 22 H 1.48497 * 109.47335 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46911 * 300.00581 * 20 18 16 24 24 C 1.46503 * 120.00068 * 0.02562 * 14 12 11 25 25 C 1.52993 * 109.47334 * 89.99657 * 24 14 12 26 26 C 1.47197 * 109.47098 * 179.97438 * 25 24 14 27 27 N 8.99846 * 154.26582 * 31.81945 * 5 1 2 28 28 C 1.48567 * 104.22355 * 320.51374 * 10 9 8 29 29 H 1.09001 * 109.46577 * 60.00430 * 1 2 3 30 30 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47212 * 300.00355 * 1 2 3 32 32 H 0.96995 * 120.00050 * 179.72114 * 2 1 3 33 33 H 0.96999 * 120.00050 * 0.02562 * 5 3 2 34 34 H 1.08994 * 110.33099 * 237.79138 * 8 6 5 35 35 H 1.09002 * 110.32441 * 0.02562 * 8 6 5 36 36 H 1.09001 * 110.41284 * 142.63393 * 9 8 6 37 37 H 1.09003 * 110.41484 * 265.07721 * 9 8 6 38 38 H 1.08999 * 109.46907 * 50.12963 * 11 10 9 39 39 H 1.09005 * 109.47298 * 170.12615 * 11 10 9 40 40 H 1.09007 * 109.46890 * 210.00157 * 15 14 12 41 41 H 1.09002 * 109.47256 * 330.00007 * 15 14 12 42 42 H 0.97007 * 120.00371 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46849 * 210.00159 * 24 14 12 44 44 H 1.08999 * 109.46890 * 329.99515 * 24 14 12 45 45 H 1.08992 * 109.47433 * 300.00297 * 25 24 14 46 46 H 1.09006 * 109.47273 * 60.00495 * 25 24 14 47 47 H 1.09000 * 110.40916 * 280.70814 * 28 10 9 48 48 H 1.08996 * 110.41140 * 158.25585 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2191 2.4359 0.0000 7 1 3.6891 3.1782 -0.5970 8 6 4.4089 2.9458 1.4434 9 6 5.9377 3.0041 1.6504 10 7 6.4965 3.1297 0.2797 11 6 7.9030 2.7074 0.2439 12 6 8.7488 3.7140 0.9804 13 8 8.2307 4.6872 1.4859 14 7 10.0806 3.5323 1.0783 15 6 10.9026 4.5106 1.7948 16 6 10.9968 4.1200 3.2472 17 1 10.4949 3.2316 3.6011 18 6 11.7245 4.8962 4.1240 19 7 12.3362 5.9777 3.6931 20 14 11.8407 4.4124 5.9246 21 1 12.4603 3.0674 6.0368 22 1 12.6751 5.4033 6.6507 23 1 10.4796 4.3813 6.5176 24 6 10.7063 2.3564 0.4682 25 6 11.1146 2.6842 -0.9694 26 6 11.7439 1.5029 -1.5821 27 7 12.2273 0.5932 -2.0597 28 6 5.6491 2.2293 -0.5439 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.9500 -0.8400 0.0041 33 1 3.9717 0.3272 0.0005 34 1 3.9737 3.9388 1.5546 35 1 3.9575 2.2518 2.1525 36 1 6.2070 3.8725 2.2517 37 1 6.2926 2.0884 2.1232 38 1 8.0017 1.7320 0.7202 39 1 8.2363 2.6413 -0.7919 40 1 11.9017 4.5341 1.3594 41 1 10.4472 5.4975 1.7128 42 1 12.8479 6.5240 4.3101 43 1 11.5897 2.0761 1.0420 44 1 9.9975 1.5284 0.4647 45 1 10.2314 2.9645 -1.5431 46 1 11.8236 3.5122 -0.9659 47 1 5.9589 1.1923 -0.4144 48 1 5.7011 2.5143 -1.5946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342377510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:40 Heat of formation + Delta-G solvation = -47.698616 kcal Electronic energy + Delta-G solvation = -29114.545414 eV Core-core repulsion = 25011.004585 eV Total energy + Delta-G solvation = -4103.540829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.34245 -40.74753 -39.28623 -37.91548 -36.60802 -35.57710 -35.42319 -34.81469 -32.31573 -32.04126 -29.78162 -29.38719 -27.62018 -26.58144 -25.26201 -24.31276 -22.58356 -22.16470 -21.45943 -19.83720 -19.61272 -18.79210 -18.30687 -17.90969 -17.70470 -16.96031 -16.92328 -16.41075 -16.26123 -15.95372 -15.83812 -15.53376 -15.40460 -15.03682 -14.69662 -14.52804 -14.25616 -14.22701 -14.03232 -13.62741 -13.49827 -13.44283 -13.21393 -13.18329 -12.99957 -12.92845 -12.76043 -12.67244 -12.51011 -12.33986 -12.32249 -12.13804 -11.83084 -11.70567 -11.65147 -11.37546 -10.56446 -10.47469 -10.36692 -9.77808 -9.41566 -9.36175 -8.15566 -6.27698 1.40272 1.43400 1.49799 1.70773 1.75186 1.88506 1.99381 2.15505 2.28741 2.45636 3.01366 3.15340 3.22801 3.45430 3.54853 3.73341 3.94654 4.07719 4.12985 4.17255 4.30523 4.34813 4.42819 4.46566 4.48361 4.64934 4.68634 4.70900 4.84916 4.89248 4.96568 5.04259 5.09625 5.11083 5.15125 5.18294 5.38197 5.47573 5.52370 5.64875 5.84535 5.91006 5.99644 6.04534 6.16343 6.64816 6.80428 6.88467 7.13559 7.38258 7.61671 7.63675 8.90648 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.002632 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.270310 B =10634.370445 C =12461.186455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.738 5.738 3 C 0.694 3.306 4 O -0.639 6.639 5 N -0.723 5.723 6 C 0.167 3.833 7 H 0.079 0.921 8 C -0.127 4.127 9 C 0.040 3.960 10 N -0.511 5.511 11 C 0.034 3.966 12 C 0.500 3.500 13 O -0.573 6.573 14 N -0.601 5.601 15 C 0.262 3.738 16 C -0.536 4.536 17 H 0.053 0.947 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.262 1.262 22 H -0.284 1.284 23 H -0.280 1.280 24 C 0.114 3.886 25 C -0.039 4.039 26 C 0.247 3.753 27 N -0.490 5.490 28 C 0.038 3.962 29 H 0.046 0.954 30 H 0.113 0.887 31 H 0.042 0.958 32 H 0.415 0.585 33 H 0.413 0.587 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.139 0.861 40 H 0.033 0.967 41 H 0.001 0.999 42 H 0.264 0.736 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.139 0.861 46 H 0.117 0.883 47 H 0.082 0.918 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.248 -17.563 -11.096 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.395 5.395 3 C 0.394 3.606 4 O -0.521 6.521 5 N -0.380 5.380 6 C 0.060 3.940 7 H 0.097 0.903 8 C -0.166 4.166 9 C -0.088 4.088 10 N -0.235 5.235 11 C -0.097 4.097 12 C 0.289 3.711 13 O -0.452 6.452 14 N -0.332 5.332 15 C 0.140 3.860 16 C -0.575 4.575 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.566 5.566 20 Si 0.781 3.219 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.206 1.206 24 C -0.010 4.010 25 C -0.080 4.080 26 C -0.070 4.070 27 N -0.168 5.168 28 C -0.090 4.090 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.061 0.939 32 H 0.252 0.748 33 H 0.250 0.750 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.157 0.843 40 H 0.051 0.949 41 H 0.019 0.981 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.127 0.873 45 H 0.157 0.843 46 H 0.135 0.865 47 H 0.100 0.900 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.243 -16.771 -11.691 26.111 hybrid contribution 0.689 -0.543 1.881 2.076 sum -15.555 -17.314 -9.810 25.258 Atomic orbital electron populations 1.21516 0.77556 1.03995 1.01053 1.44841 1.08208 1.06863 1.79550 1.16262 0.82331 0.84465 0.77544 1.90924 1.68951 1.32452 1.59735 1.45012 1.03935 1.09647 1.79359 1.21310 0.92017 0.85144 0.95505 0.90286 1.22661 0.94863 1.01590 0.97496 1.23038 0.94131 1.00552 0.91114 1.65080 1.01059 1.49093 1.08314 1.22320 0.88424 0.95663 1.03288 1.21146 0.82439 0.87202 0.80329 1.90681 1.72537 1.33062 1.48878 1.48090 1.06791 1.24925 1.53433 1.18746 0.89540 0.87397 0.90296 1.21713 1.30649 1.09940 0.95213 0.92834 1.25730 0.95368 0.94885 1.02980 1.70020 1.33859 1.15910 1.36843 0.85645 0.77815 0.78456 0.79953 1.18689 1.20947 1.20571 1.21516 1.00433 0.87751 0.91327 1.19848 1.02738 0.89928 0.95462 1.29121 0.92052 0.93706 0.92126 1.81238 1.11363 1.13027 1.11220 1.23378 0.89699 0.96719 0.99171 0.93544 0.86881 0.93878 0.74831 0.74956 0.92391 0.90689 0.92449 0.92993 0.89253 0.84299 0.94935 0.98107 0.92668 0.90048 0.87333 0.84335 0.86500 0.90000 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.70 127.77 1.37 2.41 16 2 N -0.74 -8.28 5.72 -500.17 -2.86 -11.14 16 3 C 0.69 13.59 8.56 179.06 1.53 15.12 16 4 O -0.64 -19.52 16.04 -4.01 -0.06 -19.59 16 5 N -0.72 -10.12 5.05 -453.53 -2.29 -12.41 16 6 C 0.17 3.15 3.36 45.89 0.15 3.30 16 7 H 0.08 1.89 7.64 -2.38 -0.02 1.87 16 8 C -0.13 -2.98 6.78 31.49 0.21 -2.77 16 9 C 0.04 1.05 5.80 86.45 0.50 1.55 16 10 N -0.51 -11.97 5.06 -886.04 -4.49 -16.45 16 11 C 0.03 0.71 3.85 85.56 0.33 1.04 16 12 C 0.50 17.30 7.48 87.66 0.66 17.96 16 13 O -0.57 -26.90 14.42 -3.06 -0.04 -26.94 16 14 N -0.60 -20.54 2.46 -826.15 -2.03 -22.57 16 15 C 0.26 12.45 5.16 85.63 0.44 12.89 16 16 C -0.54 -28.56 9.39 25.60 0.24 -28.32 16 17 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 18 C 0.01 0.52 5.46 84.66 0.46 0.98 16 19 N -0.93 -53.80 13.29 21.45 0.28 -53.52 16 20 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 C 0.11 2.53 5.17 86.38 0.45 2.97 16 25 C -0.04 -0.62 6.03 28.79 0.17 -0.45 16 26 C 0.25 4.86 15.43 89.45 1.38 6.24 16 27 N -0.49 -12.64 18.53 20.00 0.37 -12.27 16 28 C 0.04 0.55 6.19 86.45 0.54 1.09 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.42 1.49 8.84 -92.71 -0.82 0.67 16 33 H 0.41 2.65 8.36 -92.71 -0.77 1.87 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.67 7.95 -2.39 -0.02 1.65 16 36 H 0.06 2.06 6.91 -2.39 -0.02 2.04 16 37 H 0.05 1.22 7.82 -2.39 -0.02 1.20 16 38 H 0.09 1.42 7.14 -2.39 -0.02 1.41 16 39 H 0.14 1.81 7.18 -2.38 -0.02 1.79 16 40 H 0.03 1.54 8.07 -2.38 -0.02 1.52 16 41 H 0.00 0.04 7.42 -2.39 -0.02 0.03 16 42 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 43 H 0.08 2.05 8.07 -2.38 -0.02 2.03 16 44 H 0.11 1.65 6.44 -2.39 -0.02 1.64 16 45 H 0.14 1.45 7.22 -2.39 -0.02 1.43 16 46 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.08 0.68 7.59 -2.39 -0.02 0.66 16 48 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -86.00 402.41 -1.25 -87.26 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -0.60 Total: 8.16 kcal Atomic # 6 Polarization: 25.58 SS G_CDS: 8.43 Total: 34.02 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -11.01 Total: -128.36 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.11 Total: -46.53 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -86.00 -1.25 -87.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342377510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.558 kcal (2) G-P(sol) polarization free energy of solvation -86.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds