Wall clock time and date at job start Tue Mar 31 2020 21:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35780 * 116.99394 * 2 1 4 4 C 1.39377 * 120.05723 * 180.02562 * 3 2 1 5 5 C 1.38436 * 117.97201 * 179.97438 * 4 3 2 6 6 C 1.39482 * 117.95854 * 0.02562 * 5 4 3 7 7 N 1.39642 * 120.08727 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99706 * 174.83581 * 7 6 5 9 9 O 1.21585 * 120.00123 * 5.08474 * 8 7 6 10 10 N 1.34783 * 119.99913 * 185.08741 * 8 7 6 11 11 C 1.46501 * 119.99815 * 359.97438 * 10 8 7 12 12 C 1.50700 * 109.46583 * 90.00286 * 11 10 8 13 13 H 1.07998 * 120.00443 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99915 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99582 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00293 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47379 * 90.00225 * 16 14 12 18 18 H 1.48507 * 109.47209 * 209.99920 * 16 14 12 19 19 H 1.48495 * 109.47415 * 329.99952 * 16 14 12 20 20 C 1.46503 * 120.00071 * 179.97438 * 10 8 7 21 21 C 1.53001 * 109.47112 * 89.99805 * 20 10 8 22 22 C 1.52992 * 109.47299 * 179.97438 * 21 20 10 23 23 N 1.46895 * 109.47302 * 179.97438 * 22 21 20 24 24 C 1.46900 * 111.00336 * 170.00083 * 23 22 21 25 25 C 1.46899 * 111.00462 * 293.95890 * 23 22 21 26 26 N 1.32277 * 119.82360 * 359.97438 * 6 5 4 27 27 N 1.28338 * 122.17105 * 0.02562 * 26 6 5 28 28 H 1.09005 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47570 * 299.99677 * 1 2 3 30 30 H 1.09000 * 109.47451 * 59.99924 * 1 2 3 31 31 H 1.07997 * 121.01201 * 0.25443 * 4 3 2 32 32 H 1.08003 * 121.01904 * 180.02562 * 5 4 3 33 33 H 0.96995 * 119.99617 * 354.83898 * 7 6 5 34 34 H 1.08995 * 109.47063 * 209.99937 * 11 10 8 35 35 H 1.08996 * 109.47315 * 330.00866 * 11 10 8 36 36 H 0.97006 * 119.99807 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47251 * 209.99960 * 20 10 8 38 38 H 1.09006 * 109.47016 * 329.99901 * 20 10 8 39 39 H 1.09005 * 109.46895 * 300.00195 * 21 20 10 40 40 H 1.09001 * 109.47062 * 59.99679 * 21 20 10 41 41 H 1.08997 * 109.47258 * 300.00273 * 22 21 20 42 42 H 1.09006 * 109.46822 * 60.00100 * 22 21 20 43 43 H 1.08999 * 109.47113 * 59.99699 * 24 23 22 44 44 H 1.08999 * 109.47696 * 180.02562 * 24 23 22 45 45 H 1.09006 * 109.46834 * 300.00691 * 24 23 22 46 46 H 1.08998 * 109.47427 * 59.99621 * 25 23 22 47 47 H 1.08998 * 109.47123 * 180.02562 * 25 23 22 48 48 H 1.09008 * 109.46948 * 299.99555 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2099 0.0000 4 6 3.4371 1.2844 -0.0005 5 6 4.0201 2.5399 -0.0011 6 6 3.1781 3.6519 -0.0005 7 7 3.7188 4.9394 -0.0004 8 6 2.9079 6.0108 -0.1049 9 8 1.7012 5.8621 -0.1061 10 7 3.4346 7.2471 -0.2082 11 6 4.8886 7.4264 -0.2062 12 6 5.4044 7.3623 -1.6208 13 1 4.7179 7.2035 -2.4393 14 6 6.7527 7.5064 -1.8701 15 7 7.5888 7.6992 -0.8733 16 14 7.3920 7.4277 -3.6235 17 1 7.3906 8.7909 -4.2126 18 1 8.7766 6.8906 -3.6219 19 1 6.5174 6.5391 -4.4299 20 6 2.5531 8.4117 -0.3223 21 6 2.2286 8.9446 1.0747 22 6 1.3086 10.1612 0.9555 23 7 0.9965 10.6724 2.2968 24 6 0.3149 11.9714 2.2198 25 6 0.1969 9.7026 3.0571 26 7 1.8661 3.4837 0.0001 27 7 1.3265 2.3192 0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0421 0.3898 -0.0051 32 1 5.0940 2.6549 -0.0019 33 1 4.6780 5.0626 0.0748 34 1 5.1346 8.3960 0.2266 35 1 5.3513 6.6364 0.3853 36 1 8.5375 7.8003 -1.0487 37 1 3.0515 9.1893 -0.9011 38 1 1.6300 8.1209 -0.8238 39 1 1.7302 8.1669 1.6535 40 1 3.1517 9.2353 1.5762 41 1 1.8074 10.9386 0.3769 42 1 0.3854 9.8708 0.4539 43 1 -0.6154 11.8611 1.6626 44 1 0.0959 12.3272 3.2265 45 1 0.9589 12.6901 1.7128 46 1 0.7549 8.7719 3.1589 47 1 -0.0203 10.1066 4.0459 48 1 -0.7379 9.5101 2.5303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346677142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:26 Heat of formation + Delta-G solvation = 19.283718 kcal Electronic energy + Delta-G solvation = -29413.752639 eV Core-core repulsion = 25313.116382 eV Total energy + Delta-G solvation = -4100.636257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.15443 -39.62950 -38.25721 -37.56824 -35.40297 -34.65194 -33.02088 -32.78594 -31.58444 -29.89942 -27.58878 -27.50250 -27.45258 -25.95283 -24.44056 -23.54188 -23.06303 -22.33938 -20.63993 -19.71553 -18.43369 -18.03113 -17.29142 -16.75641 -16.46055 -16.19030 -15.58791 -15.41809 -15.10415 -14.67743 -14.60106 -14.55675 -14.35476 -14.01522 -13.93814 -13.79336 -13.46660 -12.95567 -12.58465 -12.36777 -12.18473 -12.03588 -11.82875 -11.74002 -11.66207 -11.52360 -11.39111 -11.32592 -11.19771 -10.95105 -10.79189 -10.59772 -10.29452 -10.11294 -9.86236 -9.80247 -9.60118 -9.04238 -8.65562 -8.31398 -8.13034 -7.66479 -6.27454 -4.36236 0.90459 1.24999 2.84497 3.11421 3.17127 3.25057 3.29130 3.57204 3.96856 4.08667 4.24584 4.30157 4.40602 4.69555 4.89411 4.98968 5.05444 5.12891 5.18370 5.19912 5.25832 5.31996 5.41264 5.42808 5.57175 5.59192 5.67337 5.73553 5.74218 5.80939 5.81651 5.91638 5.99351 6.04050 6.20022 6.47467 6.59251 6.71441 6.82214 7.01564 7.06828 7.10447 7.11358 7.22528 7.62356 7.68853 7.94376 8.41688 8.73526 8.98204 9.24846 9.34287 10.78306 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006364 B = 0.004061 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4398.605005 B = 6892.478845 C =10751.214780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.308 6.308 3 C 0.214 3.786 4 C -0.105 4.105 5 C -0.121 4.121 6 C 0.304 3.696 7 N -0.653 5.653 8 C 0.699 3.301 9 O -0.559 6.559 10 N -0.607 5.607 11 C 0.239 3.761 12 C -0.542 4.542 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.141 3.859 21 C -0.131 4.131 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.025 3.975 25 C 0.022 3.978 26 N -0.196 5.196 27 N -0.273 5.273 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.425 0.575 34 H 0.043 0.957 35 H 0.027 0.973 36 H 0.266 0.734 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.747 -5.511 4.914 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.213 6.213 3 C 0.026 3.974 4 C -0.135 4.135 5 C -0.154 4.154 6 C 0.063 3.937 7 N -0.305 5.305 8 C 0.400 3.600 9 O -0.433 6.433 10 N -0.342 5.342 11 C 0.119 3.881 12 C -0.581 4.581 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.198 1.198 20 C 0.017 3.983 21 C -0.170 4.170 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.126 4.126 26 N -0.047 5.047 27 N -0.129 5.129 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.267 0.733 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.359 -4.977 5.187 12.608 hybrid contribution 1.606 -0.563 -1.376 2.188 sum -8.753 -5.540 3.811 11.037 Atomic orbital electron populations 1.22904 0.77212 1.02878 1.02790 1.86181 1.22813 1.23633 1.88699 1.21424 0.90941 0.87195 0.97799 1.21260 0.92170 0.98904 1.01154 1.21824 1.02020 0.90470 1.01061 1.19916 0.91592 0.86085 0.96070 1.42872 1.11805 1.01674 1.74150 1.15888 0.84865 0.80749 0.78521 1.90971 1.11861 1.84363 1.56123 1.47395 1.09162 1.03256 1.74368 1.19361 0.73183 0.98305 0.97270 1.21545 0.92650 1.51020 0.92877 0.91948 1.24945 0.96684 0.94579 0.97481 1.69922 1.03616 1.48277 1.30948 0.86514 0.78119 0.78571 0.84413 1.20422 1.21038 1.19816 1.21102 0.94297 0.87180 0.95762 1.21982 0.99944 0.96427 0.98620 1.22073 0.98399 0.97523 0.88942 1.61970 1.45069 1.03476 1.16679 1.22366 0.96915 0.91519 1.01532 1.22425 0.95748 0.96735 0.97690 1.73470 1.07982 1.11526 1.11718 1.73098 1.31562 0.93928 1.14276 0.88623 0.92167 0.92142 0.82627 0.82267 0.73340 0.93903 0.95482 0.92406 0.90219 0.90960 0.91760 0.90939 0.90624 0.94750 0.95897 0.91669 0.91374 0.90832 0.91836 0.95729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.40 101.05 1.05 1.44 16 2 O -0.31 -3.99 10.49 -19.05 -0.20 -4.19 16 3 C 0.21 3.18 7.57 -16.98 -0.13 3.05 16 4 C -0.11 -1.31 10.15 -39.08 -0.40 -1.71 16 5 C -0.12 -1.64 10.06 -39.04 -0.39 -2.03 16 6 C 0.30 5.42 7.51 -154.37 -1.16 4.26 16 7 N -0.65 -12.31 5.28 -15.65 -0.08 -12.39 16 8 C 0.70 14.86 8.24 -86.92 -0.72 14.14 16 9 O -0.56 -13.15 14.22 5.29 0.08 -13.08 16 10 N -0.61 -12.41 2.46 -180.80 -0.44 -12.85 16 11 C 0.24 5.31 4.97 -5.19 -0.03 5.29 16 12 C -0.54 -13.37 9.39 -34.44 -0.32 -13.69 16 13 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 14 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -23.17 13.29 55.43 0.74 -22.43 16 16 Si 0.90 19.82 29.54 -169.99 -5.02 14.79 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.14 2.54 5.41 -4.04 -0.02 2.51 16 21 C -0.13 -2.09 5.46 -26.73 -0.15 -2.24 16 22 C 0.06 0.81 4.96 -3.83 -0.02 0.79 16 23 N -0.55 -7.23 5.02 -251.26 -1.26 -8.49 16 24 C 0.03 0.27 9.57 60.06 0.57 0.84 16 25 C 0.02 0.27 9.32 60.06 0.56 0.83 16 26 N -0.20 -3.94 9.07 31.32 0.28 -3.66 16 27 N -0.27 -4.88 10.39 30.51 0.32 -4.56 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 31 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.16 1.65 8.06 -52.48 -0.42 1.22 16 33 H 0.43 7.52 6.41 -40.82 -0.26 7.26 16 34 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.03 0.61 6.29 -51.93 -0.33 0.28 16 36 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.07 1.33 7.42 -51.93 -0.39 0.95 16 39 H 0.06 1.11 6.55 -51.93 -0.34 0.77 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 42 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 43 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 45 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 46 H 0.07 0.98 6.47 -51.93 -0.34 0.64 16 47 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 48 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -31.10 400.40 -8.32 -39.43 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.52 Total: 6.33 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -1.24 Total: 15.07 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.45 Total: -64.39 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.12 Total: -17.27 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.10 -8.32 -39.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346677142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.709 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds