Wall clock time and date at job start Tue Mar 31 2020 21:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35780 * 116.99394 * 2 1 4 4 C 1.39377 * 120.05723 * 180.02562 * 3 2 1 5 5 C 1.38436 * 117.97201 * 179.97438 * 4 3 2 6 6 C 1.39482 * 117.95854 * 0.02562 * 5 4 3 7 7 N 1.39642 * 120.08727 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99706 * 174.83581 * 7 6 5 9 9 O 1.21585 * 120.00123 * 5.08474 * 8 7 6 10 10 N 1.34783 * 119.99913 * 185.08741 * 8 7 6 11 11 C 1.46501 * 119.99815 * 359.97438 * 10 8 7 12 12 C 1.50700 * 109.46583 * 90.00286 * 11 10 8 13 13 H 1.07998 * 120.00443 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99915 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99582 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00293 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47379 * 90.00225 * 16 14 12 18 18 H 1.48507 * 109.47209 * 209.99920 * 16 14 12 19 19 H 1.48495 * 109.47415 * 329.99952 * 16 14 12 20 20 C 1.46503 * 120.00071 * 179.97438 * 10 8 7 21 21 C 1.53001 * 109.47112 * 89.99805 * 20 10 8 22 22 C 1.52992 * 109.47299 * 179.97438 * 21 20 10 23 23 N 1.46895 * 109.47302 * 179.97438 * 22 21 20 24 24 C 1.46900 * 111.00336 * 170.00083 * 23 22 21 25 25 C 1.46899 * 111.00462 * 293.95890 * 23 22 21 26 26 N 1.32277 * 119.82360 * 359.97438 * 6 5 4 27 27 N 1.28338 * 122.17105 * 0.02562 * 26 6 5 28 28 H 1.09005 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47570 * 299.99677 * 1 2 3 30 30 H 1.09000 * 109.47451 * 59.99924 * 1 2 3 31 31 H 1.07997 * 121.01201 * 0.25443 * 4 3 2 32 32 H 1.08003 * 121.01904 * 180.02562 * 5 4 3 33 33 H 0.96995 * 119.99617 * 354.83898 * 7 6 5 34 34 H 1.08995 * 109.47063 * 209.99937 * 11 10 8 35 35 H 1.08996 * 109.47315 * 330.00866 * 11 10 8 36 36 H 0.97006 * 119.99807 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47251 * 209.99960 * 20 10 8 38 38 H 1.09006 * 109.47016 * 329.99901 * 20 10 8 39 39 H 1.09005 * 109.46895 * 300.00195 * 21 20 10 40 40 H 1.09001 * 109.47062 * 59.99679 * 21 20 10 41 41 H 1.08997 * 109.47258 * 300.00273 * 22 21 20 42 42 H 1.09006 * 109.46822 * 60.00100 * 22 21 20 43 43 H 1.08999 * 109.47113 * 59.99699 * 24 23 22 44 44 H 1.08999 * 109.47696 * 180.02562 * 24 23 22 45 45 H 1.09006 * 109.46834 * 300.00691 * 24 23 22 46 46 H 1.08998 * 109.47427 * 59.99621 * 25 23 22 47 47 H 1.08998 * 109.47123 * 180.02562 * 25 23 22 48 48 H 1.09008 * 109.46948 * 299.99555 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2099 0.0000 4 6 3.4371 1.2844 -0.0005 5 6 4.0201 2.5399 -0.0011 6 6 3.1781 3.6519 -0.0005 7 7 3.7188 4.9394 -0.0004 8 6 2.9079 6.0108 -0.1049 9 8 1.7012 5.8621 -0.1061 10 7 3.4346 7.2471 -0.2082 11 6 4.8886 7.4264 -0.2062 12 6 5.4044 7.3623 -1.6208 13 1 4.7179 7.2035 -2.4393 14 6 6.7527 7.5064 -1.8701 15 7 7.5888 7.6992 -0.8733 16 14 7.3920 7.4277 -3.6235 17 1 7.3906 8.7909 -4.2126 18 1 8.7766 6.8906 -3.6219 19 1 6.5174 6.5391 -4.4299 20 6 2.5531 8.4117 -0.3223 21 6 2.2286 8.9446 1.0747 22 6 1.3086 10.1612 0.9555 23 7 0.9965 10.6724 2.2968 24 6 0.3149 11.9714 2.2198 25 6 0.1969 9.7026 3.0571 26 7 1.8661 3.4837 0.0001 27 7 1.3265 2.3192 0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0421 0.3898 -0.0051 32 1 5.0940 2.6549 -0.0019 33 1 4.6780 5.0626 0.0748 34 1 5.1346 8.3960 0.2266 35 1 5.3513 6.6364 0.3853 36 1 8.5375 7.8003 -1.0487 37 1 3.0515 9.1893 -0.9011 38 1 1.6300 8.1209 -0.8238 39 1 1.7302 8.1669 1.6535 40 1 3.1517 9.2353 1.5762 41 1 1.8074 10.9386 0.3769 42 1 0.3854 9.8708 0.4539 43 1 -0.6154 11.8611 1.6626 44 1 0.0959 12.3272 3.2265 45 1 0.9589 12.6901 1.7128 46 1 0.7549 8.7719 3.1589 47 1 -0.0203 10.1066 4.0459 48 1 -0.7379 9.5101 2.5303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346677142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:25 Heat of formation + Delta-G solvation = -2.636177 kcal Electronic energy + Delta-G solvation = -29414.703157 eV Core-core repulsion = 25313.116382 eV Total energy + Delta-G solvation = -4101.586775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.41356 -41.12411 -39.38832 -38.66276 -36.93899 -36.19569 -34.72186 -34.05416 -32.98408 -31.18697 -29.24310 -28.50001 -28.45969 -27.27940 -25.67341 -24.90525 -24.64265 -23.59004 -21.80770 -21.18101 -19.65146 -19.31080 -18.84764 -18.41851 -17.97073 -17.32134 -16.87004 -16.57274 -16.55229 -16.30996 -15.85584 -15.65349 -15.50028 -15.15178 -15.12528 -15.05279 -14.61320 -14.50568 -14.31455 -13.60393 -13.43381 -13.27411 -12.94568 -12.92629 -12.88943 -12.78821 -12.75826 -12.64408 -12.53710 -12.40757 -12.34523 -11.97724 -11.87945 -11.69438 -11.49476 -11.16235 -10.96327 -10.60852 -10.35898 -9.64372 -9.32645 -9.20228 -8.19330 -6.34482 -0.20200 0.03418 1.42249 1.45528 1.48591 1.55269 2.00940 2.11736 2.40649 2.68609 2.76383 3.07251 3.10606 3.22478 3.51073 3.78580 3.94867 3.96679 4.12649 4.23125 4.36485 4.40260 4.40528 4.43845 4.44824 4.49775 4.63707 4.66698 4.70924 4.74458 4.77344 4.81652 4.87099 4.91600 4.98874 5.01569 5.13288 5.17206 5.30776 5.45006 5.61353 5.75534 5.99969 6.03581 6.05151 6.07103 6.12935 6.65963 6.92136 7.36802 7.54841 7.82576 8.85073 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006364 B = 0.004061 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4398.605005 B = 6892.478845 C =10751.214780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.305 6.305 3 C 0.215 3.785 4 C -0.089 4.089 5 C -0.108 4.108 6 C 0.280 3.720 7 N -0.651 5.651 8 C 0.694 3.306 9 O -0.587 6.587 10 N -0.609 5.609 11 C 0.254 3.746 12 C -0.548 4.548 13 H 0.048 0.952 14 C 0.031 3.969 15 N -0.913 5.913 16 Si 0.952 3.048 17 H -0.278 1.278 18 H -0.278 1.278 19 H -0.276 1.276 20 C 0.140 3.860 21 C -0.114 4.114 22 C 0.065 3.935 23 N -0.563 5.563 24 C 0.025 3.975 25 C 0.024 3.976 26 N -0.246 5.246 27 N -0.305 5.305 28 H 0.134 0.866 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.202 0.798 32 H 0.195 0.805 33 H 0.429 0.571 34 H 0.029 0.971 35 H 0.028 0.972 36 H 0.269 0.731 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.034 0.966 43 H 0.028 0.972 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.082 0.918 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 -6.637 4.718 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.210 6.210 3 C 0.026 3.974 4 C -0.118 4.118 5 C -0.139 4.139 6 C 0.038 3.962 7 N -0.304 5.304 8 C 0.395 3.605 9 O -0.464 6.464 10 N -0.343 5.343 11 C 0.133 3.867 12 C -0.587 4.587 13 H 0.066 0.934 14 C -0.171 4.171 15 N -0.552 5.552 16 Si 0.778 3.222 17 H -0.204 1.204 18 H -0.203 1.203 19 H -0.201 1.201 20 C 0.016 3.984 21 C -0.153 4.153 22 C -0.063 4.063 23 N -0.287 5.287 24 C -0.123 4.123 25 C -0.124 4.124 26 N -0.095 5.095 27 N -0.161 5.161 28 H 0.152 0.848 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.219 0.781 32 H 0.212 0.788 33 H 0.271 0.729 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.046 0.954 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.587 -6.122 4.998 12.425 hybrid contribution 1.304 -0.347 -1.289 1.866 sum -8.283 -6.469 3.710 11.146 Atomic orbital electron populations 1.23145 0.75889 1.05162 1.02063 1.86210 1.24135 1.22377 1.88230 1.21819 0.92203 0.87127 0.96281 1.21769 0.91390 1.00022 0.98591 1.22199 1.03267 0.89313 0.99163 1.20216 0.91973 0.86520 0.97488 1.42721 1.11586 1.01820 1.74273 1.16070 0.84800 0.81275 0.78331 1.90941 1.13102 1.84818 1.57529 1.47422 1.08722 1.03864 1.74338 1.19060 0.74067 0.97426 0.96098 1.21637 0.92689 1.50987 0.93392 0.93361 1.25522 0.96801 0.94257 1.00479 1.69991 1.03906 1.48861 1.32408 0.85646 0.77640 0.78312 0.80562 1.20362 1.20322 1.20140 1.21200 0.93586 0.86583 0.97002 1.21772 0.99779 0.96928 0.96807 1.21969 0.97872 0.96672 0.89790 1.61963 1.46112 1.04601 1.16068 1.22432 0.97028 0.90143 1.02686 1.22412 0.95293 0.96104 0.98629 1.73302 1.09614 1.13009 1.13549 1.72961 1.32471 0.94307 1.16320 0.84792 0.92824 0.93015 0.78070 0.78753 0.72891 0.95314 0.95387 0.92167 0.89831 0.91693 0.93416 0.91932 0.89590 0.94746 0.95358 0.90237 0.90728 0.92564 0.89970 0.95670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.40 113.37 1.18 1.80 16 2 O -0.31 -7.27 10.49 -91.08 -0.96 -8.23 16 3 C 0.21 6.09 7.57 84.91 0.64 6.73 16 4 C -0.09 -1.94 10.15 22.59 0.23 -1.71 16 5 C -0.11 -2.69 10.06 22.62 0.23 -2.47 16 6 C 0.28 10.00 7.51 132.96 1.00 11.00 16 7 N -0.65 -25.00 5.28 -321.71 -1.70 -26.70 16 8 C 0.69 30.58 8.24 179.05 1.48 32.06 16 9 O -0.59 -28.93 14.22 -3.98 -0.06 -28.98 16 10 N -0.61 -25.70 2.46 -844.19 -2.07 -27.77 16 11 C 0.25 11.51 4.97 85.63 0.43 11.94 16 12 C -0.55 -27.16 9.39 25.60 0.24 -26.92 16 13 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 14 C 0.03 1.53 5.46 84.65 0.46 1.99 16 15 N -0.91 -47.09 13.29 21.45 0.28 -46.81 16 16 Si 0.95 40.12 29.54 68.60 2.03 42.14 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 C 0.14 5.21 5.41 86.38 0.47 5.68 16 21 C -0.11 -3.76 5.46 30.59 0.17 -3.60 16 22 C 0.07 1.80 4.96 86.30 0.43 2.23 16 23 N -0.56 -14.52 5.02 -948.86 -4.76 -19.28 16 24 C 0.02 0.49 9.57 127.69 1.22 1.71 16 25 C 0.02 0.58 9.32 127.69 1.19 1.77 16 26 N -0.25 -10.16 9.07 -54.83 -0.50 -10.66 16 27 N -0.31 -11.08 10.39 -170.21 -1.77 -12.85 16 28 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.05 1.11 8.11 -2.38 -0.02 1.09 16 30 H 0.05 1.09 8.11 -2.39 -0.02 1.07 16 31 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.43 15.28 6.41 -92.71 -0.59 14.69 16 34 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 35 H 0.03 1.27 6.29 -2.39 -0.02 1.26 16 36 H 0.27 13.20 8.31 -92.70 -0.77 12.43 16 37 H 0.08 3.00 8.07 -2.39 -0.02 2.98 16 38 H 0.06 2.50 7.42 -2.38 -0.02 2.49 16 39 H 0.05 1.73 6.55 -2.38 -0.02 1.72 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.09 2.18 8.06 -2.39 -0.02 2.16 16 42 H 0.03 0.95 8.12 -2.38 -0.02 0.93 16 43 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 45 H 0.07 1.36 8.12 -2.38 -0.02 1.35 16 46 H 0.06 1.55 6.47 -2.39 -0.02 1.53 16 47 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 48 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -68.65 400.40 0.23 -68.42 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.37 Total: 28.49 kcal Atomic # 6 Polarization: 32.86 SS G_CDS: 9.35 Total: 42.21 kcal Atomic # 7 Polarization: -133.54 SS G_CDS: -10.51 Total: -144.06 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.01 Total: -37.21 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Total: -68.65 0.23 -68.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346677142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.785 kcal (2) G-P(sol) polarization free energy of solvation -68.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds