Wall clock time and date at job start Tue Mar 31 2020 20:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46892 * 109.47167 * 2 1 4 4 C 1.46900 * 111.00185 * 293.95091 * 3 2 1 5 5 C 1.46906 * 111.00257 * 169.99994 * 3 2 1 6 6 C 1.52992 * 109.47341 * 189.99656 * 5 3 2 7 7 N 1.46506 * 109.47161 * 179.97438 * 6 5 3 8 8 C 1.34773 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.21363 * 120.00428 * 359.73058 * 8 7 6 10 10 C 1.49346 * 120.00023 * 180.02562 * 8 7 6 11 11 O 1.21386 * 119.99415 * 359.72870 * 10 8 7 12 12 N 1.34777 * 120.00052 * 179.73002 * 10 8 7 13 13 C 1.39925 * 119.99564 * 180.02562 * 12 10 8 14 14 C 1.40463 * 125.98615 * 359.71572 * 13 12 10 15 15 C 1.35210 * 107.86850 * 179.88944 * 14 13 12 16 16 C 1.50704 * 126.06075 * 180.15285 * 15 14 13 17 17 N 1.34987 * 107.87920 * 0.36572 * 15 14 13 18 18 C 1.46492 * 125.97441 * 179.73077 * 17 15 14 19 19 C 1.50706 * 109.47532 * 270.01787 * 18 17 15 20 20 H 1.08004 * 119.99218 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00367 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00230 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99869 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47121 * 90.00644 * 23 21 19 25 25 H 1.48506 * 109.46986 * 210.00058 * 23 21 19 26 26 H 1.48495 * 109.47381 * 329.99931 * 23 21 19 27 27 N 1.31273 * 125.97739 * 180.02562 * 13 12 10 28 28 H 1.09004 * 109.47159 * 300.00291 * 1 2 3 29 29 H 1.09004 * 109.47282 * 60.00044 * 1 2 3 30 30 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47159 * 239.99708 * 2 1 3 32 32 H 1.09004 * 109.47282 * 119.99956 * 2 1 3 33 33 H 1.08997 * 109.47433 * 296.05044 * 4 3 2 34 34 H 1.09001 * 109.46861 * 56.04477 * 4 3 2 35 35 H 1.09003 * 109.47584 * 176.04927 * 4 3 2 36 36 H 1.09004 * 109.46760 * 69.99751 * 5 3 2 37 37 H 1.08998 * 109.46860 * 310.00453 * 5 3 2 38 38 H 1.09004 * 109.47116 * 60.00313 * 6 5 3 39 39 H 1.08998 * 109.47794 * 300.00225 * 6 5 3 40 40 H 0.96998 * 119.99507 * 0.02562 * 7 6 5 41 41 H 0.96996 * 119.99887 * 359.97438 * 12 10 8 42 42 H 1.07998 * 126.06084 * 0.02652 * 14 13 12 43 43 H 1.08997 * 109.47230 * 270.25196 * 16 15 14 44 44 H 1.09000 * 109.47408 * 30.25213 * 16 15 14 45 45 H 1.09003 * 109.46794 * 150.24910 * 16 15 14 46 46 H 1.08998 * 109.47231 * 30.01867 * 18 17 15 47 47 H 1.08999 * 109.47200 * 150.01786 * 18 17 15 48 48 H 0.96993 * 119.99864 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6702 2.0669 -1.2533 5 6 3.4685 1.4311 0.2382 6 6 3.8999 2.8791 0.4790 7 7 5.3447 2.9250 0.7171 8 6 5.9514 4.1049 0.9539 9 8 5.3018 5.1299 0.9651 10 6 7.4244 4.1518 1.1961 11 8 8.0742 3.1266 1.1845 12 7 8.0320 5.3324 1.4275 13 6 9.4121 5.3763 1.6539 14 6 10.2808 4.2726 1.6737 15 6 11.5285 4.7311 1.9212 16 6 12.7768 3.8933 2.0265 17 7 11.4571 6.0717 2.0619 18 6 12.5804 6.9683 2.3452 19 6 12.7408 7.1172 3.8363 20 1 12.0728 6.5956 4.5058 21 6 13.7400 7.9190 4.3455 22 7 13.8802 8.0486 5.6468 23 14 14.8956 8.8204 3.1873 24 1 14.3307 10.1553 2.8642 25 1 16.2191 8.9878 3.8398 26 1 15.0558 8.0349 1.9374 27 7 10.1209 6.4556 1.8905 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1769 1.5790 -2.0860 34 1 0.5919 2.0178 -1.4052 35 1 1.9824 3.1098 -1.1989 36 1 3.9925 1.0358 -0.6321 37 1 3.7122 0.8289 1.1134 38 1 3.3759 3.2743 1.3493 39 1 3.6562 3.4813 -0.3962 40 1 5.8647 2.1063 0.7036 41 1 7.5127 6.1516 1.4365 42 1 10.0018 3.2412 1.5167 43 1 12.9158 3.5768 3.0602 44 1 12.6802 3.0154 1.3877 45 1 13.6372 4.4817 1.7077 46 1 13.4940 6.5512 1.9214 47 1 12.3868 7.9448 1.9013 48 1 14.5834 8.6124 6.0050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348796362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:30 Heat of formation + Delta-G solvation = 22.726879 kcal Electronic energy + Delta-G solvation = -28013.204655 eV Core-core repulsion = 23912.717705 eV Total energy + Delta-G solvation = -4100.486950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.17255 -40.35526 -38.85665 -38.24419 -35.71832 -34.79014 -33.33717 -31.79928 -31.63327 -31.19847 -29.16908 -27.55744 -26.87899 -26.51649 -24.99504 -22.82416 -22.30904 -21.47795 -21.05714 -19.95071 -19.64665 -18.01092 -17.19612 -17.15427 -16.59010 -16.40109 -15.98994 -15.95788 -15.32207 -15.27486 -15.02414 -14.70596 -14.55521 -14.17323 -14.00249 -13.76595 -13.41071 -13.28101 -12.70039 -12.65239 -12.49268 -12.45268 -12.38489 -12.35484 -12.10085 -11.90492 -11.69473 -11.60434 -11.55819 -11.38814 -11.24547 -10.81857 -10.65790 -10.06550 -10.03684 -9.65581 -9.62203 -9.57299 -8.93487 -8.80569 -8.11666 -7.62465 -6.28518 -4.32215 1.15257 1.94933 2.55432 2.95399 2.98831 3.14235 3.19554 3.22687 3.45437 3.59223 3.81213 4.19260 4.25791 4.32629 4.48337 4.54391 4.68298 4.89903 4.98973 4.99523 4.99873 5.02440 5.22765 5.25304 5.37440 5.43426 5.46239 5.52527 5.52822 5.73279 5.74428 5.83554 5.97858 6.02310 6.23211 6.30344 6.39401 6.44801 6.46601 6.51634 6.60658 6.84202 7.20430 7.24892 7.31708 7.58582 7.76155 7.89152 8.27322 8.44431 8.76282 9.26162 10.83914 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033437 B = 0.001683 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.184450 B =16636.100717 C =16913.340490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.014 3.986 5 C 0.042 3.958 6 C 0.120 3.880 7 N -0.701 5.701 8 C 0.518 3.482 9 O -0.513 6.513 10 C 0.514 3.486 11 O -0.498 6.498 12 N -0.599 5.599 13 C 0.262 3.738 14 C -0.286 4.286 15 C 0.097 3.903 16 C -0.086 4.086 17 N -0.312 5.312 18 C 0.230 3.770 19 C -0.543 4.543 20 H 0.081 0.919 21 C 0.080 3.920 22 N -0.885 5.885 23 Si 0.874 3.126 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.264 1.264 27 N -0.308 5.308 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.028 0.972 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.414 0.586 41 H 0.424 0.576 42 H 0.163 0.837 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.052 0.948 47 H 0.047 0.953 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.619 -16.500 -14.089 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.264 5.264 4 C -0.134 4.134 5 C -0.086 4.086 6 C -0.003 4.003 7 N -0.355 5.355 8 C 0.298 3.702 9 O -0.388 6.388 10 C 0.293 3.707 11 O -0.371 6.371 12 N -0.247 5.247 13 C 0.009 3.991 14 C -0.317 4.317 15 C -0.034 4.034 16 C -0.144 4.144 17 N -0.094 5.094 18 C 0.111 3.889 19 C -0.581 4.581 20 H 0.099 0.901 21 C -0.124 4.124 22 N -0.522 5.522 23 Si 0.700 3.300 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.189 1.189 27 N -0.138 5.138 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.250 0.750 41 H 0.261 0.739 42 H 0.180 0.820 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.714 -14.811 -13.396 28.773 hybrid contribution 0.991 -0.536 -1.078 1.559 sum -19.723 -15.347 -14.474 28.879 Atomic orbital electron populations 1.21811 0.94539 1.01743 1.02680 1.22112 0.96408 0.88166 1.01039 1.61888 1.12563 1.16503 1.35424 1.22564 1.01914 0.99569 0.89343 1.22264 0.88382 0.96246 1.01737 1.21426 0.78934 0.96923 1.03059 1.45572 1.09508 1.09566 1.70878 1.19826 0.87847 0.84275 0.78268 1.90804 1.65978 1.33081 1.48898 1.19903 0.88148 0.83726 0.78895 1.90713 1.65290 1.33021 1.48071 1.41994 1.05269 1.10383 1.67049 1.18877 0.83571 0.93660 1.02999 1.21246 0.90172 1.00015 1.20218 1.21074 0.97206 0.85142 0.99962 1.20371 0.92676 0.97903 1.03430 1.48595 1.05027 1.05210 1.50599 1.20053 0.80800 0.89198 0.98804 1.21158 1.17296 1.30869 0.88756 0.90068 1.24799 0.96841 0.95651 0.95158 1.69870 1.32800 1.38294 1.11233 0.86890 0.80856 0.81045 0.81204 1.19598 1.20499 1.18904 1.77340 0.89078 1.20142 1.27271 0.91644 0.92577 0.92144 0.94712 0.90515 0.95362 0.90770 0.90798 0.93743 0.89640 0.89738 0.90712 0.74999 0.73898 0.82001 0.89932 0.90560 0.90995 0.93053 0.93504 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.84 37.15 0.37 -0.29 16 2 C 0.05 0.25 5.68 -3.83 -0.02 0.23 16 3 N -0.54 -3.26 4.76 -242.92 -1.16 -4.42 16 4 C 0.01 0.08 9.13 60.06 0.55 0.62 16 5 C 0.04 0.24 5.07 -3.82 -0.02 0.22 16 6 C 0.12 0.90 5.60 -4.04 -0.02 0.87 16 7 N -0.70 -6.18 5.55 -60.76 -0.34 -6.52 16 8 C 0.52 6.29 7.89 -11.64 -0.09 6.20 16 9 O -0.51 -7.30 16.48 5.49 0.09 -7.21 16 10 C 0.51 7.37 7.85 -11.63 -0.09 7.28 16 11 O -0.50 -7.69 13.60 5.47 0.07 -7.62 16 12 N -0.60 -9.65 5.43 -11.58 -0.06 -9.72 16 13 C 0.26 5.20 8.10 -154.56 -1.25 3.95 16 14 C -0.29 -5.54 9.51 -39.82 -0.38 -5.91 16 15 C 0.10 1.94 6.92 -82.28 -0.57 1.37 16 16 C -0.09 -1.35 10.11 36.01 0.36 -0.99 16 17 N -0.31 -7.10 3.59 -58.33 -0.21 -7.31 16 18 C 0.23 5.45 5.06 -5.19 -0.03 5.43 16 19 C -0.54 -15.04 9.94 -34.44 -0.34 -15.39 16 20 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 21 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 22 N -0.89 -26.12 13.96 55.43 0.77 -25.34 16 23 Si 0.87 19.95 27.47 -169.99 -4.67 15.29 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 27 N -0.31 -6.95 12.60 31.41 0.40 -6.56 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.24 6.47 -51.93 -0.34 -0.10 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.03 0.17 8.12 -51.93 -0.42 -0.26 16 32 H 0.08 0.36 7.93 -51.93 -0.41 -0.06 16 33 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.07 0.35 6.30 -51.93 -0.33 0.02 16 35 H 0.07 0.41 6.47 -51.93 -0.34 0.07 16 36 H 0.04 0.23 8.12 -51.93 -0.42 -0.19 16 37 H 0.09 0.44 7.93 -51.93 -0.41 0.02 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.58 6.55 -51.93 -0.34 0.24 16 40 H 0.41 3.05 7.94 -40.82 -0.32 2.72 16 41 H 0.42 6.21 8.29 -40.82 -0.34 5.87 16 42 H 0.16 2.93 5.91 -52.49 -0.31 2.62 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.11 7.07 -51.93 -0.37 0.74 16 46 H 0.05 1.12 6.10 -51.93 -0.32 0.81 16 47 H 0.05 1.10 7.57 -51.93 -0.39 0.71 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -33.16 396.36 -7.95 -41.11 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.18 Total: 6.62 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.64 Total: 5.69 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.60 Total: -59.86 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.16 Total: -14.82 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.67 Total: 15.29 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.16 -7.95 -41.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348796362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.837 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds