Wall clock time and date at job start Tue Mar 31 2020 20:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46892 * 109.47167 * 2 1 4 4 C 1.46900 * 111.00185 * 293.95091 * 3 2 1 5 5 C 1.46906 * 111.00257 * 169.99994 * 3 2 1 6 6 C 1.52992 * 109.47341 * 189.99656 * 5 3 2 7 7 N 1.46506 * 109.47161 * 179.97438 * 6 5 3 8 8 C 1.34773 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.21363 * 120.00428 * 359.73058 * 8 7 6 10 10 C 1.49346 * 120.00023 * 180.02562 * 8 7 6 11 11 O 1.21386 * 119.99415 * 359.72870 * 10 8 7 12 12 N 1.34777 * 120.00052 * 179.73002 * 10 8 7 13 13 C 1.39925 * 119.99564 * 180.02562 * 12 10 8 14 14 C 1.40463 * 125.98615 * 359.71572 * 13 12 10 15 15 C 1.35210 * 107.86850 * 179.88944 * 14 13 12 16 16 C 1.50704 * 126.06075 * 180.15285 * 15 14 13 17 17 N 1.34987 * 107.87920 * 0.36572 * 15 14 13 18 18 C 1.46492 * 125.97441 * 179.73077 * 17 15 14 19 19 C 1.50706 * 109.47532 * 270.01787 * 18 17 15 20 20 H 1.08004 * 119.99218 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00367 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00230 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99869 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47121 * 90.00644 * 23 21 19 25 25 H 1.48506 * 109.46986 * 210.00058 * 23 21 19 26 26 H 1.48495 * 109.47381 * 329.99931 * 23 21 19 27 27 N 1.31273 * 125.97739 * 180.02562 * 13 12 10 28 28 H 1.09004 * 109.47159 * 300.00291 * 1 2 3 29 29 H 1.09004 * 109.47282 * 60.00044 * 1 2 3 30 30 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47159 * 239.99708 * 2 1 3 32 32 H 1.09004 * 109.47282 * 119.99956 * 2 1 3 33 33 H 1.08997 * 109.47433 * 296.05044 * 4 3 2 34 34 H 1.09001 * 109.46861 * 56.04477 * 4 3 2 35 35 H 1.09003 * 109.47584 * 176.04927 * 4 3 2 36 36 H 1.09004 * 109.46760 * 69.99751 * 5 3 2 37 37 H 1.08998 * 109.46860 * 310.00453 * 5 3 2 38 38 H 1.09004 * 109.47116 * 60.00313 * 6 5 3 39 39 H 1.08998 * 109.47794 * 300.00225 * 6 5 3 40 40 H 0.96998 * 119.99507 * 0.02562 * 7 6 5 41 41 H 0.96996 * 119.99887 * 359.97438 * 12 10 8 42 42 H 1.07998 * 126.06084 * 0.02652 * 14 13 12 43 43 H 1.08997 * 109.47230 * 270.25196 * 16 15 14 44 44 H 1.09000 * 109.47408 * 30.25213 * 16 15 14 45 45 H 1.09003 * 109.46794 * 150.24910 * 16 15 14 46 46 H 1.08998 * 109.47231 * 30.01867 * 18 17 15 47 47 H 1.08999 * 109.47200 * 150.01786 * 18 17 15 48 48 H 0.96993 * 119.99864 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6702 2.0669 -1.2533 5 6 3.4685 1.4311 0.2382 6 6 3.8999 2.8791 0.4790 7 7 5.3447 2.9250 0.7171 8 6 5.9514 4.1049 0.9539 9 8 5.3018 5.1299 0.9651 10 6 7.4244 4.1518 1.1961 11 8 8.0742 3.1266 1.1845 12 7 8.0320 5.3324 1.4275 13 6 9.4121 5.3763 1.6539 14 6 10.2808 4.2726 1.6737 15 6 11.5285 4.7311 1.9212 16 6 12.7768 3.8933 2.0265 17 7 11.4571 6.0717 2.0619 18 6 12.5804 6.9683 2.3452 19 6 12.7408 7.1172 3.8363 20 1 12.0728 6.5956 4.5058 21 6 13.7400 7.9190 4.3455 22 7 13.8802 8.0486 5.6468 23 14 14.8956 8.8204 3.1873 24 1 14.3307 10.1553 2.8642 25 1 16.2191 8.9878 3.8398 26 1 15.0558 8.0349 1.9374 27 7 10.1209 6.4556 1.8905 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1769 1.5790 -2.0860 34 1 0.5919 2.0178 -1.4052 35 1 1.9824 3.1098 -1.1989 36 1 3.9925 1.0358 -0.6321 37 1 3.7122 0.8289 1.1134 38 1 3.3759 3.2743 1.3493 39 1 3.6562 3.4813 -0.3962 40 1 5.8647 2.1063 0.7036 41 1 7.5127 6.1516 1.4365 42 1 10.0018 3.2412 1.5167 43 1 12.9158 3.5768 3.0602 44 1 12.6802 3.0154 1.3877 45 1 13.6372 4.4817 1.7077 46 1 13.4940 6.5512 1.9214 47 1 12.3868 7.9448 1.9013 48 1 14.5834 8.6124 6.0050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348796362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:29 Heat of formation + Delta-G solvation = -2.895618 kcal Electronic energy + Delta-G solvation = -28014.315730 eV Core-core repulsion = 23912.717705 eV Total energy + Delta-G solvation = -4101.598025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.54948 -41.61116 -39.85338 -38.89574 -36.84370 -35.92949 -35.21430 -33.26499 -32.84707 -32.29740 -29.81097 -29.17564 -27.94261 -27.56064 -26.09975 -24.35130 -23.21394 -22.32324 -21.84875 -21.39615 -20.89850 -19.25008 -19.23700 -18.24055 -17.58523 -17.40663 -17.09993 -16.83763 -16.71430 -16.34950 -16.02876 -15.83743 -15.47640 -15.37537 -14.98760 -14.86330 -14.69352 -14.54584 -13.93880 -13.90780 -13.79489 -13.64604 -13.28174 -13.14544 -13.03256 -12.90009 -12.75131 -12.66660 -12.54915 -12.34731 -12.30211 -12.07756 -11.82875 -11.75037 -11.61254 -11.54134 -10.90271 -10.84257 -10.38612 -9.68829 -9.35871 -9.22248 -8.40357 -6.51882 0.01264 0.78977 1.04153 1.35568 1.38319 1.47282 1.68186 1.74920 2.21410 2.26808 2.45963 2.92388 2.98981 3.29158 3.75889 3.76940 3.99330 4.05136 4.14077 4.29887 4.36579 4.44652 4.50102 4.55024 4.59651 4.62846 4.65294 4.74887 4.78037 4.81886 4.87507 4.88941 4.98116 5.01529 5.04561 5.08939 5.14739 5.15797 5.22886 5.38982 5.73005 5.78512 5.96082 6.02073 6.05632 6.13135 6.33306 6.51387 6.53398 6.75604 6.88390 7.12067 8.76254 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033437 B = 0.001683 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.184450 B =16636.100717 C =16913.340490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.552 5.552 4 C 0.014 3.986 5 C 0.049 3.951 6 C 0.122 3.878 7 N -0.680 5.680 8 C 0.526 3.474 9 O -0.535 6.535 10 C 0.518 3.482 11 O -0.505 6.505 12 N -0.601 5.601 13 C 0.268 3.732 14 C -0.292 4.292 15 C 0.093 3.907 16 C -0.085 4.085 17 N -0.338 5.338 18 C 0.239 3.761 19 C -0.552 4.552 20 H 0.024 0.976 21 C 0.022 3.978 22 N -0.937 5.937 23 Si 0.951 3.049 24 H -0.268 1.268 25 H -0.274 1.274 26 H -0.232 1.232 27 N -0.351 5.351 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.031 0.969 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.423 0.577 41 H 0.429 0.571 42 H 0.177 0.823 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.048 0.952 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.463 -17.928 -16.388 31.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.277 5.277 4 C -0.134 4.134 5 C -0.080 4.080 6 C -0.001 4.001 7 N -0.334 5.334 8 C 0.305 3.695 9 O -0.412 6.412 10 C 0.299 3.701 11 O -0.378 6.378 12 N -0.250 5.250 13 C 0.014 3.986 14 C -0.323 4.323 15 C -0.037 4.037 16 C -0.143 4.143 17 N -0.120 5.120 18 C 0.120 3.880 19 C -0.590 4.590 20 H 0.042 0.958 21 C -0.177 4.177 22 N -0.575 5.575 23 Si 0.772 3.228 24 H -0.193 1.193 25 H -0.199 1.199 26 H -0.154 1.154 27 N -0.181 5.181 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.261 0.739 41 H 0.267 0.733 42 H 0.194 0.806 43 H 0.098 0.902 44 H 0.131 0.869 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.598 -16.310 -15.718 30.616 hybrid contribution 0.757 -0.234 -0.304 0.849 sum -19.841 -16.544 -16.022 30.398 Atomic orbital electron populations 1.21792 0.94234 1.02263 1.02240 1.22154 0.96665 0.87580 1.01396 1.61886 1.12660 1.17284 1.35868 1.22570 1.02313 0.99283 0.89243 1.22202 0.88464 0.94808 1.02516 1.21502 0.77544 0.98392 1.02619 1.45525 1.10210 1.08803 1.68840 1.19378 0.86501 0.84940 0.78682 1.90809 1.65885 1.34030 1.50489 1.20335 0.89105 0.82916 0.77762 1.90691 1.65847 1.33153 1.48114 1.42116 1.03958 1.11467 1.67486 1.19195 0.84992 0.93285 1.01140 1.21494 0.89991 1.00435 1.20339 1.21823 0.98999 0.84458 0.98378 1.20543 0.90980 0.98659 1.04098 1.48507 1.04893 1.06132 1.52500 1.19839 0.82395 0.90037 0.95765 1.21246 1.16512 1.30656 0.90591 0.95779 1.25824 0.98673 0.96271 0.96975 1.70033 1.34069 1.39569 1.13859 0.85681 0.77842 0.79583 0.79702 1.19270 1.19914 1.15450 1.77245 0.89621 1.21811 1.29465 0.92536 0.92523 0.91176 0.94300 0.90163 0.95013 0.90302 0.91235 0.92829 0.88821 0.90614 0.90728 0.73857 0.73275 0.80585 0.90234 0.86933 0.90363 0.90382 0.93359 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.84 71.98 0.71 -0.39 16 2 C 0.05 0.41 5.68 86.30 0.49 0.90 16 3 N -0.55 -5.81 4.76 -922.47 -4.39 -10.21 16 4 C 0.01 0.13 9.13 127.69 1.17 1.29 16 5 C 0.05 0.45 5.07 86.30 0.44 0.89 16 6 C 0.12 1.64 5.60 86.38 0.48 2.13 16 7 N -0.68 -10.83 5.55 -464.52 -2.58 -13.41 16 8 C 0.53 12.20 7.89 87.24 0.69 12.89 16 9 O -0.54 -14.89 16.48 -3.29 -0.05 -14.94 16 10 C 0.52 14.38 7.85 87.24 0.69 15.06 16 11 O -0.51 -14.83 13.60 -3.36 -0.05 -14.88 16 12 N -0.60 -19.29 5.43 -308.89 -1.68 -20.97 16 13 C 0.27 10.66 8.10 133.40 1.08 11.74 16 14 C -0.29 -11.09 9.51 22.11 0.21 -10.88 16 15 C 0.09 3.66 6.92 41.38 0.29 3.94 16 16 C -0.08 -2.52 10.11 71.24 0.72 -1.80 16 17 N -0.34 -15.42 3.59 -338.46 -1.22 -16.64 16 18 C 0.24 11.23 5.06 85.64 0.43 11.66 16 19 C -0.55 -31.47 9.94 25.60 0.25 -31.21 16 20 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 21 C 0.02 1.25 5.47 84.65 0.46 1.71 16 22 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 23 Si 0.95 40.47 27.47 68.60 1.88 42.36 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.23 -8.59 6.54 99.48 0.65 -7.94 16 27 N -0.35 -16.13 12.60 -54.54 -0.69 -16.82 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.41 6.47 -2.39 -0.02 0.40 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.04 0.30 8.12 -2.39 -0.02 0.28 16 32 H 0.08 0.60 7.93 -2.39 -0.02 0.58 16 33 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.08 0.65 6.30 -2.39 -0.02 0.63 16 35 H 0.07 0.70 6.47 -2.39 -0.02 0.68 16 36 H 0.05 0.43 8.12 -2.39 -0.02 0.41 16 37 H 0.09 0.74 7.93 -2.39 -0.02 0.72 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.06 6.55 -2.39 -0.02 1.04 16 40 H 0.42 5.29 7.94 -92.71 -0.74 4.56 16 41 H 0.43 12.70 8.29 -92.71 -0.77 11.93 16 42 H 0.18 6.09 5.91 -2.91 -0.02 6.07 16 43 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.08 2.22 7.07 -2.39 -0.02 2.20 16 46 H 0.08 3.22 6.10 -2.39 -0.01 3.21 16 47 H 0.05 2.24 7.57 -2.39 -0.02 2.22 16 48 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -74.12 396.36 -0.92 -75.04 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.56 Total: 29.09 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 8.11 Total: 17.95 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -10.25 Total: -134.61 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.10 Total: -29.82 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.88 Total: 42.36 kcal Total: -74.12 -0.92 -75.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348796362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.141 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds